RNA–Protein interactions for RNA: ENST00000561076.1

RTF1-207, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 314 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-207ENST00000561076 HYLS1Q96M11 299 aa1.29□□□□□ -2.2
RTF1-207ENST00000561076 SLC50A1Q9BRV3 221 aa1.29□□□□□ -2.2
RTF1-207ENST00000561076 SNRNP25Q9BV90 132 aaKnown RBP1.29□□□□□ -2.2
RTF1-207ENST00000561076 FKBP11Q9NYL4 201 aa1.29□□□□□ -2.2
RTF1-207ENST00000561076 TAS2R8Q9NYW2 309 aa1.29□□□□□ -2.2
RTF1-207ENST00000561076 BOKQ9UMX3 212 aaPredicted RBP1.29□□□□□ -2.2
RTF1-207ENST00000561076 RPL26L1Q9UNX3 145 aaKnown RBP1.29□□□□□ -2.2
RTF1-207ENST00000561076 MPC1Q9Y5U8 109 aa1.29□□□□□ -2.2
RTF1-207ENST00000561076 SVILO95425 2214 aa1.29□□□□□ -2.2
RTF1-207ENST00000561076 HFM1A2PYH4 1435 aa1.29□□□□□ -2.2
RTF1-207ENST00000561076 CASKIN1Q8WXD9 1431 aa1.29□□□□□ -2.2
RTF1-207ENST00000561076 ERBINQ96RT1 1412 aa1.29□□□□□ -2.2
RTF1-207ENST00000561076 ADGRB3O60242 1522 aa1.29□□□□□ -2.2
RTF1-207ENST00000561076 NEXMIFQ5QGS0 1516 aa1.29□□□□□ -2.2
RTF1-207ENST00000561076 TMEM131LA2VDJ0 1609 aa1.29□□□□□ -2.2
RTF1-207ENST00000561076 CDC42BPBQ9Y5S2 1711 aa1.29□□□□□ -2.2
RTF1-207ENST00000561076 BRWD3Q6RI45 1802 aa1.29□□□□□ -2.2
RTF1-207ENST00000561076 EP400Q96L91 3159 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 TRAV12-2A0A075B6T6 113 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 TRAV1-1A0A0B4J248 108 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 LY6LH3BQJ8 138 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 RPL36A-HNRNPH2H7BZ11 118 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 J3QLW9 94 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 OR1I1O60431 355 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 EDF1O60869 148 aaKnown RBP1.28□□□□□ -2.2
RTF1-207ENST00000561076 PGLYRP1O75594 196 aaPredicted RBP1.28□□□□□ -2.2
RTF1-207ENST00000561076 KLF7O75840 302 aaPredicted RBP1.28□□□□□ -2.2
RTF1-207ENST00000561076 UBL3O95164 117 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 CRPP02741 224 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 CD14P08571 375 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 SLC25A4P12235 298 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 CSRP1P21291 193 aaKnown RBP1.28□□□□□ -2.2
RTF1-207ENST00000561076 S100A10P60903 97 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 ZNF345Q14585 488 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 KRTAP25-1Q3LHN0 102 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 Q56UQ5 140 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 SPINK14Q6IE38 97 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 CASC2Q6XLA1 102 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 Q6ZQT0 140 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 TMEM136Q6ZRR5 245 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 GKN2Q86XP6 184 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 SNX29P2Q8IUI4 249 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 SPTSSAQ969W0 71 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 MRPL57Q9BQC6 102 aaKnown RBP1.28□□□□□ -2.2
RTF1-207ENST00000561076 NAA38Q9BRA0 125 aaKnown RBP1.28□□□□□ -2.2
RTF1-207ENST00000561076 SEC11CQ9BY50 192 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 CXCL16Q9H2A7 254 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 C16orf95Q9H693 158 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 MYOM3Q5VTT5 1437 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 PXDNQ92626 1479 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 DUOX2Q9NRD8 1548 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 PIK3C2BO00750 1634 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 LTBP1Q14766 1721 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 SHANK3Q9BYB0 1731 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 ECM29Q5VYK3 1845 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 SPEF2Q9C093 1822 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 NLRC5Q86WI3 1866 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 PLXNB3Q9ULL4 1909 aa1.28□□□□□ -2.2
RTF1-207ENST00000561076 ZNF638Q14966 1978 aaKnown RBP1.28□□□□□ -2.2
RTF1-207ENST00000561076 TDRD6O60522 2096 aaKnown RBP1.28□□□□□ -2.2
RTF1-207ENST00000561076 ZNF318Q5VUA4 2279 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 DOCK9Q9BZ29 2069 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 SCN1AP35498 2009 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 ATAD5Q96QE3 1844 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 PIK3C2AO00443 1686 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 MYOM1P52179 1685 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 USP32Q8NFA0 1604 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 PTPN23Q9H3S7 1636 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 LMTK2Q8IWU2 1503 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 CEP162Q5TB80 1403 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 VPS8Q8N3P4 1428 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 IGKV1D-42A0A075B6H8 117 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 TRAV14DV4A0A0A6YYC5 116 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 A0A1B0GVG6 124 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 FAM24AA6NFZ4 105 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 OR51F1A6NGY5 319 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 PANO1I0J062 215 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 ERC2-IT1O76042 136 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 TNFP01375 233 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 IL5P05113 134 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 CTSGP08311 255 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 IFITM1P13164 125 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 BTG2P78543 158 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 HSD52Q0P140 79 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 NNATQ16517 81 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 ASB16-AS1Q495Z4 193 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 KPRPQ5T749 579 aaPredicted RBP1.27□□□□□ -2.21
RTF1-207ENST00000561076 C9orf153Q5TBE3 101 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 PATE2Q6UY27 113 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 Q6ZUT4 128 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 ATP6V0E2Q8NHE4 81 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 OTOSQ8NHW6 89 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 C4orf3Q8WVX3 66 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 Q96M85 177 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 KRTAP9-4Q9BYQ2 154 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 CYTL1Q9NRR1 136 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 IER3IP1Q9Y5U9 82 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 SMAD5-AS1Q9Y6J3 95 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 SERP1Q9Y6X1 66 aa1.27□□□□□ -2.21
RTF1-207ENST00000561076 NUP210Q8TEM1 1887 aaPredicted RBP1.26□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms