RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PRSS3P2Q8NHM4 247 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 IL17DQ8TAD2 202 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 FAM234AQ9H0X4 552 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 OTORQ9NRC9 128 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 HILPDAQ9Y5L2 63 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 MED12Q93074 2177 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 DNAJC13O75165 2243 aa4.15□□□□□ -1.74
USP28-213ENST00000544967 TRBV20-1A0A075B6N2 111 aa4.15□□□□□ -1.74
USP28-213ENST00000544967 UPK2O00526 184 aa4.15□□□□□ -1.74
USP28-213ENST00000544967 RNASE2P10153 161 aaKnown RBP4.15□□□□□ -1.74
USP28-213ENST00000544967 C12orf74Q32Q52 190 aa4.15□□□□□ -1.74
USP28-213ENST00000544967 MOB3BQ86TA1 216 aa4.15□□□□□ -1.74
USP28-213ENST00000544967 LYPD1Q8N2G4 141 aa4.15□□□□□ -1.74
USP28-213ENST00000544967 TMEM75Q8N9X5 138 aa4.15□□□□□ -1.74
USP28-213ENST00000544967 DLX4Q92988 240 aaPredicted RBP4.15□□□□□ -1.74
USP28-213ENST00000544967 SLC25A39Q9BZJ4 359 aaPredicted RBP4.15□□□□□ -1.74
USP28-213ENST00000544967 TMEM126AQ9H061 195 aa4.15□□□□□ -1.74
USP28-213ENST00000544967 C5orf49A4QMS7 147 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 RHODO00212 210 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 COX7A2P2O60397 106 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 PROP1O75360 226 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 GHRHP01286 108 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 TCRAP04437 139 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 Q86TA4 180 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 WDR86Q86TI4 376 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 TEN1Q86WV5 123 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 ANAPC13Q9BS18 74 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 LINC00574Q9H8X3 128 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 HELZ2Q9BYK8 2649 aaKnown RBP4.15□□□□□ -1.75
USP28-213ENST00000544967 IGLV3-9A0A075B6K5 115 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 IGKV1OR2-108A0A075B7D4 117 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 IGHV1-18A0A0C4DH31 117 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 MOSP00540 346 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 TWIST1Q15672 202 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 ETDBQ3ZM63 59 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 SERTAD4-AS1Q5TG53 156 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 LINC00336Q6ZUF6 198 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 KRTAP1-3Q8IUG1 177 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 ORMDL3Q8N138 153 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 ZCCHC24Q8N2G6 241 aaKnown RBP4.15□□□□□ -1.75
USP28-213ENST00000544967 RAB37Q96AX2 223 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 RNF183Q96D59 192 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 PGLYRP4Q96LB8 373 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 RETNQ9HD89 108 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 HHLA3Q9XRX5 114 aa4.15□□□□□ -1.75
USP28-213ENST00000544967 TRBV7-3A0A075B6L6 115 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 TRBV25-1A0A075B6N4 114 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 PSPNO60542 156 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 CACNG7P62955 275 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 ZNF672Q499Z4 452 aaPredicted RBP4.14□□□□□ -1.75
USP28-213ENST00000544967 SPINK9Q5DT21 86 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 FAM104BQ5XKR9 115 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 ACP7Q6ZNF0 438 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 SYT8Q8NBV8 401 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 OR4C13Q8NGP0 309 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 AJUBAQ96IF1 538 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 TRGV9Q99603 122 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 A0A1W2PPR1 153 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 WI2-2373I1.2A0A1W2PRP0 233 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 PGPA6NDG6 321 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 PATE4P0C8F1 98 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 GCSHP23434 173 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 FOXG1P55316 489 aaPredicted RBP4.14□□□□□ -1.75
USP28-213ENST00000544967 TEX29Q8N6K0 151 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 TIMD4Q96H15 378 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 GAGE12JA6NER3 117 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 GAGE7O76087 117 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 IGKCP01834 107 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 SLC25A5P05141 298 aaKnown RBP4.14□□□□□ -1.75
USP28-213ENST00000544967 GAGE12FP0CL80 117 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 GAGE12GP0CL81 117 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 GAGE12IP0CL82 117 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 FCER1GP30273 86 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 UBE2D3P61077 147 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 UBE2D2P62837 147 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 FAM27E3Q08E93 113 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 GAGE4Q13068 117 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 CIARTQ8N365 385 aaPredicted RBP4.14□□□□□ -1.75
USP28-213ENST00000544967 C18orf15Q96N68 181 aa4.14□□□□□ -1.75
USP28-213ENST00000544967 NXT2Q9NPJ8 142 aaKnown RBP4.14□□□□□ -1.75
USP28-213ENST00000544967 DPM2O94777 84 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 ZNF688P0C7X2 276 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 CGB3P0DN86 165 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 CGB7P0DN87 165 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 GATA3P23771 443 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 COL8A1P27658 744 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 LOXL3P58215 753 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 PCP2Q8IVA1 136 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 OSR1Q8TAX0 266 aaPredicted RBP4.13□□□□□ -1.75
USP28-213ENST00000544967 PRRG4Q9BZD6 226 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 FREM1Q5H8C1 2179 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 UTP20O75691 2785 aaKnown RBP4.13□□□□□ -1.75
USP28-213ENST00000544967 A0A096LNT2 108 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 TRAV12-1A0A0B4J245 112 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 GP9P14770 177 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 XGP55808 180 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 ERHP84090 104 aaKnown RBP4.13□□□□□ -1.75
USP28-213ENST00000544967 TBC1D28Q2M2D7 210 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 LINC00322Q6ZN03 302 aaPredicted RBP4.13□□□□□ -1.75
USP28-213ENST00000544967 OR11H6Q8NGC7 330 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 105.6 ms