RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 SSX7Q7RTT5 188 aa13.66□□□□□ -0.22
VPS33A-205ENST00000541169 C11orf68Q9H3H3 251 aaKnown RBP13.66□□□□□ -0.22
VPS33A-205ENST00000541169 TRAV1-1A0A0B4J248 108 aa13.65□□□□□ -0.22
VPS33A-205ENST00000541169 FHITP49789 147 aa13.65□□□□□ -0.22
VPS33A-205ENST00000541169 NBEAL2Q6ZNJ1 2754 aa13.65□□□□□ -0.22
VPS33A-205ENST00000541169 TMEM189A5PLL7 270 aa13.64□□□□□ -0.23
VPS33A-205ENST00000541169 M0R2Z0 102 aa13.64□□□□□ -0.23
VPS33A-205ENST00000541169 EIF3GO75821 320 aaKnown RBP eCLIP13.64□□□□□ -0.23
VPS33A-205ENST00000541169 HBE1P02100 147 aa13.64□□□□□ -0.23
VPS33A-205ENST00000541169 CT45A10P0DMU9 189 aa13.64□□□□□ -0.23
VPS33A-205ENST00000541169 ZNF138P52744 262 aa13.64□□□□□ -0.23
VPS33A-205ENST00000541169 TMEM208Q9BTX3 173 aa13.64□□□□□ -0.23
VPS33A-205ENST00000541169 AGPAT4-IT1Q9H0P7 198 aa13.64□□□□□ -0.23
VPS33A-205ENST00000541169 EDA2RQ9HAV5 297 aa13.64□□□□□ -0.23
VPS33A-205ENST00000541169 CRISP2P16562 243 aa13.63□□□□□ -0.23
VPS33A-205ENST00000541169 FXYD7P58549 80 aa13.63□□□□□ -0.23
VPS33A-205ENST00000541169 SUMO1P63165 101 aaKnown RBP13.63□□□□□ -0.23
VPS33A-205ENST00000541169 PLA2G2EQ9NZK7 142 aa13.63□□□□□ -0.23
VPS33A-205ENST00000541169 ZNF492Q9P255 531 aa13.63□□□□□ -0.23
VPS33A-205ENST00000541169 IGKV2-40A0A087WW87 121 aaPredicted RBP13.62□□□□□ -0.23
VPS33A-205ENST00000541169 F6UZH7 168 aa13.62□□□□□ -0.23
VPS33A-205ENST00000541169 CRXO43186 299 aaPredicted RBP13.62□□□□□ -0.23
VPS33A-205ENST00000541169 IGKV2D-40P01614 121 aaPredicted RBP13.62□□□□□ -0.23
VPS33A-205ENST00000541169 FGF8P55075 233 aaPredicted RBP13.62□□□□□ -0.23
VPS33A-205ENST00000541169 HIST1H2BAQ96A08 127 aa13.62□□□□□ -0.23
VPS33A-205ENST00000541169 FAM19A4Q96LR4 140 aa13.62□□□□□ -0.23
VPS33A-205ENST00000541169 ATG101Q9BSB4 218 aa13.62□□□□□ -0.23
VPS33A-205ENST00000541169 EPDR1Q9UM22 224 aa13.62□□□□□ -0.23
VPS33A-205ENST00000541169 FAM74A7A6NL05 159 aa13.61□□□□□ -0.23
VPS33A-205ENST00000541169 H7BYZ3 331 aa13.61□□□□□ -0.23
VPS33A-205ENST00000541169 TCRAP04437 139 aa13.61□□□□□ -0.23
VPS33A-205ENST00000541169 ERCC8Q13216 396 aa13.61□□□□□ -0.23
VPS33A-205ENST00000541169 VGLL1Q99990 258 aa13.61□□□□□ -0.23
VPS33A-205ENST00000541169 X6R8D5 127 aa13.61□□□□□ -0.23
VPS33A-205ENST00000541169 KLLNB2CW77 178 aa13.6□□□□□ -0.23
VPS33A-205ENST00000541169 GGTLC3B5MD39 225 aa13.6□□□□□ -0.23
VPS33A-205ENST00000541169 IFNA7P01567 189 aa13.6□□□□□ -0.23
VPS33A-205ENST00000541169 GPX1P07203 203 aa13.6□□□□□ -0.23
VPS33A-205ENST00000541169 RRN3P1Q2M238 152 aa13.6□□□□□ -0.23
VPS33A-205ENST00000541169 GOLT1AQ6ZVE7 132 aa13.6□□□□□ -0.23
VPS33A-205ENST00000541169 C1orf158Q8N1D5 194 aa13.6□□□□□ -0.23
VPS33A-205ENST00000541169 CYB561D1Q8N8Q1 229 aa13.6□□□□□ -0.23
VPS33A-205ENST00000541169 Q8NAQ8 132 aa13.6□□□□□ -0.23
VPS33A-205ENST00000541169 TXNDC17Q9BRA2 123 aa13.6□□□□□ -0.23
VPS33A-205ENST00000541169 NIPSNAP3BQ9BS92 247 aa13.6□□□□□ -0.23
VPS33A-205ENST00000541169 NDFIP1Q9BT67 221 aa13.6□□□□□ -0.23
VPS33A-205ENST00000541169 TMPRSS5Q9H3S3 457 aa13.6□□□□□ -0.23
VPS33A-205ENST00000541169 MANBALQ9NQG1 85 aa13.6□□□□□ -0.23
VPS33A-205ENST00000541169 STAB2Q8WWQ8 2551 aa13.6□□□□□ -0.23
VPS33A-205ENST00000541169 A0A0J9YWU9 116 aa13.59□□□□□ -0.23
VPS33A-205ENST00000541169 TEX48A0A1B0GUV7 120 aa13.59□□□□□ -0.23
VPS33A-205ENST00000541169 TAGLN2P37802 199 aaKnown RBP13.59□□□□□ -0.23
VPS33A-205ENST00000541169 NKX2-5P52952 324 aaPredicted RBP13.59□□□□□ -0.23
VPS33A-205ENST00000541169 TAS2R60P59551 318 aa13.59□□□□□ -0.23
VPS33A-205ENST00000541169 BLOC1S1P78537 153 aa13.59□□□□□ -0.23
VPS33A-205ENST00000541169 PMS2P11Q13670 270 aa13.59□□□□□ -0.23
VPS33A-205ENST00000541169 TENM3Q9P273 2699 aa13.58□□□□□ -0.23
VPS33A-205ENST00000541169 TRAV12-2A0A075B6T6 113 aa13.58□□□□□ -0.24
VPS33A-205ENST00000541169 IGHV3OR16-12A0A075B7B8 117 aa13.58□□□□□ -0.24
VPS33A-205ENST00000541169 C7orf71A4D174 169 aa13.58□□□□□ -0.24
VPS33A-205ENST00000541169 UBE2G2P60604 165 aa13.58□□□□□ -0.24
VPS33A-205ENST00000541169 GFI1BQ5VTD9 330 aa13.58□□□□□ -0.24
VPS33A-205ENST00000541169 ZNF493Q6ZR52 646 aa13.58□□□□□ -0.24
VPS33A-205ENST00000541169 TMEM75Q8N9X5 138 aa13.58□□□□□ -0.24
VPS33A-205ENST00000541169 LINC01587Q99440 93 aa13.58□□□□□ -0.24
VPS33A-205ENST00000541169 PYGO2Q9BRQ0 406 aa13.58□□□□□ -0.24
VPS33A-205ENST00000541169 RPH3ALQ9UNE2 315 aa13.58□□□□□ -0.24
VPS33A-205ENST00000541169 YTHDF2Q9Y5A9 579 aaKnown RBP13.58□□□□□ -0.24
VPS33A-205ENST00000541169 IGHV4-28A0A0C4DH34 117 aa13.57□□□□□ -0.24
VPS33A-205ENST00000541169 C3orf84H3BNL1 204 aa13.57□□□□□ -0.24
VPS33A-205ENST00000541169 IFNA1P01562 189 aa13.57□□□□□ -0.24
VPS33A-205ENST00000541169 SAPCD1Q5SSQ6 148 aa13.57□□□□□ -0.24
VPS33A-205ENST00000541169 CST9LP1Q5W188 147 aa13.57□□□□□ -0.24
VPS33A-205ENST00000541169 MUC7Q8TAX7 377 aa13.57□□□□□ -0.24
VPS33A-205ENST00000541169 CCDC28AQ8IWP9 274 aa13.56□□□□□ -0.24
VPS33A-205ENST00000541169 ZFAND2AQ8N6M9 145 aa13.56□□□□□ -0.24
VPS33A-205ENST00000541169 LINC00467Q9BRT7 94 aa13.56□□□□□ -0.24
VPS33A-205ENST00000541169 PEX7O00628 323 aa13.55□□□□□ -0.24
VPS33A-205ENST00000541169 PAGE4O60829 102 aa13.55□□□□□ -0.24
VPS33A-205ENST00000541169 S100A9P06702 114 aaKnown RBP13.55□□□□□ -0.24
VPS33A-205ENST00000541169 GNG5P63218 68 aa13.55□□□□□ -0.24
VPS33A-205ENST00000541169 ALKAL2Q6UX46 152 aa13.55□□□□□ -0.24
VPS33A-205ENST00000541169 LOC102723971A0A1B0GUV8 181 aa13.54□□□□□ -0.24
VPS33A-205ENST00000541169 RNASE4P34096 147 aaKnown RBP13.54□□□□□ -0.24
VPS33A-205ENST00000541169 FLI1Q01543 452 aaPredicted RBP13.54□□□□□ -0.24
VPS33A-205ENST00000541169 C11orf45Q8TAV5 145 aa13.54□□□□□ -0.24
VPS33A-205ENST00000541169 C16orf74Q96GX8 76 aa13.54□□□□□ -0.24
VPS33A-205ENST00000541169 FMC1Q96HJ9 113 aa13.54□□□□□ -0.24
VPS33A-205ENST00000541169 TREM1Q9NP99 234 aa13.54□□□□□ -0.24
VPS33A-205ENST00000541169 TRAV12-3A0A0B4J271 114 aa13.53□□□□□ -0.24
VPS33A-205ENST00000541169 ZNF324O75467 553 aaPredicted RBP13.53□□□□□ -0.24
VPS33A-205ENST00000541169 SPART-AS1P0CW21 52 aa13.53□□□□□ -0.24
VPS33A-205ENST00000541169 RBMY1A1P0DJD3 496 aaKnown RBP13.53□□□□□ -0.24
VPS33A-205ENST00000541169 RBMY1CP0DJD4 496 aa13.53□□□□□ -0.24
VPS33A-205ENST00000541169 PRB4P10163 310 aaPredicted RBP13.53□□□□□ -0.24
VPS33A-205ENST00000541169 RBMY1FQ15415 496 aaKnown RBP13.53□□□□□ -0.24
VPS33A-205ENST00000541169 Q8TAT8 98 aa13.53□□□□□ -0.24
VPS33A-205ENST00000541169 TMEM263Q8WUH6 116 aaKnown RBP13.53□□□□□ -0.24
VPS33A-205ENST00000541169 PSG8Q9UQ74 426 aa13.53□□□□□ -0.24
VPS33A-205ENST00000541169 KLF12Q9Y4X4 402 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms