RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 TMEM238C9JI98 176 aa0.71□□□□□ -2.3
CD44-238ENST00000534296 CST7O76096 145 aa0.71□□□□□ -2.3
CD44-238ENST00000534296 TRGC2P03986 189 aa0.71□□□□□ -2.3
CD44-238ENST00000534296 OR5AS1Q8N127 324 aa0.71□□□□□ -2.3
CD44-238ENST00000534296 EXOC3-AS1Q8N2X6 119 aa0.71□□□□□ -2.3
CD44-238ENST00000534296 DYDC1Q8WWB3 177 aa0.71□□□□□ -2.3
CD44-238ENST00000534296 POP5Q969H6 163 aaKnown RBP0.71□□□□□ -2.3
CD44-238ENST00000534296 HYLS1Q96M11 299 aa0.71□□□□□ -2.3
CD44-238ENST00000534296 GGACTQ9BVM4 153 aa0.71□□□□□ -2.3
CD44-238ENST00000534296 CCDC94Q9BW85 323 aaPredicted RBP0.71□□□□□ -2.3
CD44-238ENST00000534296 MED11Q9P086 117 aa0.71□□□□□ -2.3
CD44-238ENST00000534296 CHCHD2Q9Y6H1 151 aaPredicted RBP0.71□□□□□ -2.3
CD44-238ENST00000534296 MED12Q93074 2177 aa0.71□□□□□ -2.3
CD44-238ENST00000534296 MDN1Q9NU22 5596 aa0.71□□□□□ -2.3
CD44-238ENST00000534296 NUP210Q8TEM1 1887 aaPredicted RBP0.71□□□□□ -2.3
CD44-238ENST00000534296 DSTQ03001 7570 aaKnown RBP0.71□□□□□ -2.3
CD44-238ENST00000534296 UHRF1BP1Q6BDS2 1440 aa0.71□□□□□ -2.3
CD44-238ENST00000534296 SIP14410 1827 aa0.71□□□□□ -2.3
CD44-238ENST00000534296 FRMPD1Q5SYB0 1578 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 NISCHQ9Y2I1 1504 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 PIK3C2AO00443 1686 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 PBRM1Q86U86 1689 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 TRAV23DV6A0A075B6W5 121 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 hDV103S1A0JD37 113 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 C5orf58C9J3I9 102 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 E5RI56 91 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 H3BQV1 296 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 PIAS1O75925 651 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 IGLV3-1P01715 115 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 MT-ND6P03923 174 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 CRHP06850 196 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 ARPP19P56211 112 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 ROMO1P60602 79 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 SPATA45Q537H7 98 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 TRIQKQ629K1 86 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 ZNF833PQ6ZTB9 187 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 GRINAQ7Z429 371 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 ARPINQ7Z6K5 226 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 FAM24BQ8N5W8 94 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 PRRT1Q99946 306 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 GINS3Q9BRX5 216 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 WFDC10AQ9H1F0 79 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 BIN3Q9NQY0 253 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 RNF11Q9Y3C5 154 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 APCP25054 2843 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 MUC4Q99102 2169 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 SYNMO15061 1565 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 FRYQ5TBA9 3013 aa0.7□□□□□ -2.3
CD44-238ENST00000534296 ASCC3Q8N3C0 2202 aaKnown RBP0.69□□□□□ -2.3
CD44-238ENST00000534296 COL7A1Q02388 2944 aa0.69□□□□□ -2.3
CD44-238ENST00000534296 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.69□□□□□ -2.3
CD44-238ENST00000534296 ZFC3H1O60293 1989 aaKnown RBP0.69□□□□□ -2.3
CD44-238ENST00000534296 PPYP01298 95 aa0.69□□□□□ -2.3
CD44-238ENST00000534296 CXCL1P09341 107 aa0.69□□□□□ -2.3
CD44-238ENST00000534296 RPL35P42766 123 aaKnown RBP0.69□□□□□ -2.3
CD44-238ENST00000534296 NDUFA6P56556 154 aa0.69□□□□□ -2.3
CD44-238ENST00000534296 TAS2R41P59536 307 aa0.69□□□□□ -2.3
CD44-238ENST00000534296 RTL8BQ17RB0 113 aa0.69□□□□□ -2.3
CD44-238ENST00000534296 VMA21Q3ZAQ7 101 aa0.69□□□□□ -2.3
CD44-238ENST00000534296 SPRNQ5BIV9 151 aa0.69□□□□□ -2.3
CD44-238ENST00000534296 C1orf134Q5TEV5 83 aa0.69□□□□□ -2.3
CD44-238ENST00000534296 C3orf33Q6P1S2 294 aa0.69□□□□□ -2.3
CD44-238ENST00000534296 ISOC1Q96CN7 298 aa0.69□□□□□ -2.3
CD44-238ENST00000534296 MCEEQ96PE7 176 aa0.69□□□□□ -2.3
CD44-238ENST00000534296 RTL8AQ9BWD3 113 aa0.69□□□□□ -2.3
CD44-238ENST00000534296 GID8Q9NWU2 228 aa0.69□□□□□ -2.3
CD44-238ENST00000534296 SS18L2Q9UHA2 77 aa0.69□□□□□ -2.3
CD44-238ENST00000534296 BOKQ9UMX3 212 aaPredicted RBP0.69□□□□□ -2.3
CD44-238ENST00000534296 KDM5AP29375 1690 aaKnown RBP0.69□□□□□ -2.3
CD44-238ENST00000534296 XIRP1Q702N8 1843 aaKnown RBP0.68□□□□□ -2.3
CD44-238ENST00000534296 NCAPD3P42695 1498 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 FREM2Q5SZK8 3169 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 MUC5ACP98088 5654 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 JMJD7-PLA2G4BH0Y9G9 81 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 SERPINB1P30740 379 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 S100A5P33763 92 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 GNG3P63215 75 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 HBBP68871 147 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 C1orf140Q5VVS0 124 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 PPP1R2P3Q6NXS1 205 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 LINC00575Q6W349 94 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 CD109Q6YHK3 1445 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 FAM216BQ8N7L0 139 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 NUP35Q8NFH5 326 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 OR4B1Q8NGF8 309 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 AP1S3Q96PC3 154 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 GPX7Q96SL4 187 aaPredicted RBP0.68□□□□□ -2.3
CD44-238ENST00000534296 TPRKBQ9Y3C4 175 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 V9GYQ6 96 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 SPTBN2O15020 2390 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 XIRP2A4UGR9 3374 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 RNF213Q63HN8 5207 aa0.68□□□□□ -2.3
CD44-238ENST00000534296 PHRF1Q9P1Y6 1649 aaKnown RBP0.67□□□□□ -2.3
CD44-238ENST00000534296 DMXL2Q8TDJ6 3036 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 CECR2Q9BXF3 1484 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 SNRNP200O75643 2136 aaKnown RBP0.67□□□□□ -2.3
CD44-238ENST00000534296 ZGRF1Q86YA3 2104 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 A0A087WSZ3 146 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 ODAMA1E959 279 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 B4DSR2 109 aa0.67□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 186.1 ms