RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 AMTNQ6UX39 209 aa10.06□□□□□ -0.8
CD44-224ENST00000526669 LINC00322Q6ZN03 302 aaPredicted RBP10.06□□□□□ -0.8
CD44-224ENST00000526669 CYB561D1Q8N8Q1 229 aa10.06□□□□□ -0.8
CD44-224ENST00000526669 LINC00479Q96M42 142 aa10.06□□□□□ -0.8
CD44-224ENST00000526669 ATG101Q9BSB4 218 aa10.06□□□□□ -0.8
CD44-224ENST00000526669 XCL2Q9UBD3 114 aa10.06□□□□□ -0.8
CD44-224ENST00000526669 FBN3Q75N90 2809 aa10.05□□□□□ -0.8
CD44-224ENST00000526669 RBFOX3A6NFN3 312 aa10.05□□□□□ -0.8
CD44-224ENST00000526669 AKR1C3P42330 323 aa10.05□□□□□ -0.8
CD44-224ENST00000526669 APOC4P55056 127 aa10.05□□□□□ -0.8
CD44-224ENST00000526669 KIR3DS1Q14943 382 aa10.05□□□□□ -0.8
CD44-224ENST00000526669 C9orf47Q6ZRZ4 202 aa10.05□□□□□ -0.8
CD44-224ENST00000526669 SBSPONQ8IVN8 264 aa10.05□□□□□ -0.8
CD44-224ENST00000526669 CSTL1Q9H114 145 aa10.05□□□□□ -0.8
CD44-224ENST00000526669 RETNQ9HD89 108 aa10.05□□□□□ -0.8
CD44-224ENST00000526669 VAX2Q9UIW0 290 aa10.05□□□□□ -0.8
CD44-224ENST00000526669 TENM3Q9P273 2699 aa10.05□□□□□ -0.8
CD44-224ENST00000526669 TRAV12-2A0A075B6T6 113 aa10.04□□□□□ -0.8
CD44-224ENST00000526669 RBAKDNA6NC62 111 aa10.04□□□□□ -0.8
CD44-224ENST00000526669 GIG44P09565 113 aaPredicted RBP10.04□□□□□ -0.8
CD44-224ENST00000526669 MEF2BQ02080 365 aaPredicted RBP10.04□□□□□ -0.8
CD44-224ENST00000526669 PMS2P11Q13670 270 aa10.04□□□□□ -0.8
CD44-224ENST00000526669 DEFB135Q30KP9 77 aa10.04□□□□□ -0.8
CD44-224ENST00000526669 ZNF506Q5JVG8 444 aa10.04□□□□□ -0.8
CD44-224ENST00000526669 PRNTQ86SH4 94 aa10.04□□□□□ -0.8
CD44-224ENST00000526669 LINC00477Q96M19 166 aa10.04□□□□□ -0.8
CD44-224ENST00000526669 FAM210AQ96ND0 272 aa10.04□□□□□ -0.8
CD44-224ENST00000526669 EIF5A2Q9GZV4 153 aaKnown RBP10.04□□□□□ -0.8
CD44-224ENST00000526669 ZNF492Q9P255 531 aa10.04□□□□□ -0.8
CD44-224ENST00000526669 F6UZH7 168 aa10.03□□□□□ -0.8
CD44-224ENST00000526669 K7EQM0 130 aa10.03□□□□□ -0.8
CD44-224ENST00000526669 ZNF138P52744 262 aa10.03□□□□□ -0.8
CD44-224ENST00000526669 CLLU1Q5K131 121 aa10.03□□□□□ -0.8
CD44-224ENST00000526669 MORN3Q6PF18 240 aaPredicted RBP10.03□□□□□ -0.8
CD44-224ENST00000526669 ARL6IP6Q8N6S5 226 aa10.03□□□□□ -0.8
CD44-224ENST00000526669 TMEM75Q8N9X5 138 aa10.03□□□□□ -0.8
CD44-224ENST00000526669 HIST1H2BAQ96A08 127 aa10.03□□□□□ -0.8
CD44-224ENST00000526669 CLUHP3Q96NS8 147 aa10.03□□□□□ -0.8
CD44-224ENST00000526669 PSG8Q9UQ74 426 aa10.03□□□□□ -0.8
CD44-224ENST00000526669 KIR2DL5BA0A0G2JN68 375 aa10.02□□□□□ -0.81
CD44-224ENST00000526669 KIR2DL5BA0A0G2JPC4 375 aa10.02□□□□□ -0.81
CD44-224ENST00000526669 SERTM2A0A1B0GWG4 89 aa10.02□□□□□ -0.81
CD44-224ENST00000526669 IGLV2-11P01706 119 aa10.02□□□□□ -0.81
CD44-224ENST00000526669 LEPP41159 167 aa10.02□□□□□ -0.81
CD44-224ENST00000526669 CEBPGP53567 150 aa10.02□□□□□ -0.81
CD44-224ENST00000526669 NUTF2P61970 127 aaKnown RBP10.02□□□□□ -0.81
CD44-224ENST00000526669 UBE2G1P62253 170 aa10.02□□□□□ -0.81
CD44-224ENST00000526669 FLI1Q01543 452 aaPredicted RBP10.02□□□□□ -0.81
CD44-224ENST00000526669 PRR9Q5T870 116 aa10.02□□□□□ -0.81
CD44-224ENST00000526669 KIR2DL5AQ8N109 375 aa10.02□□□□□ -0.81
CD44-224ENST00000526669 KIR2DL5BQ8NHK3 375 aa10.02□□□□□ -0.81
CD44-224ENST00000526669 C2CD4CQ8TF44 421 aa10.02□□□□□ -0.81
CD44-224ENST00000526669 C8orf49Q96NF6 230 aa10.02□□□□□ -0.81
CD44-224ENST00000526669 TXNDC17Q9BRA2 123 aa10.02□□□□□ -0.81
CD44-224ENST00000526669 DERL1Q9BUN8 251 aa10.02□□□□□ -0.81
CD44-224ENST00000526669 RGS13O14921 159 aa10.01□□□□□ -0.81
CD44-224ENST00000526669 CRXO43186 299 aaPredicted RBP10.01□□□□□ -0.81
CD44-224ENST00000526669 TAGLN2P37802 199 aaKnown RBP10.01□□□□□ -0.81
CD44-224ENST00000526669 CDKN1BP46527 198 aa10.01□□□□□ -0.81
CD44-224ENST00000526669 SRSF3P84103 164 aaKnown RBP10.01□□□□□ -0.81
CD44-224ENST00000526669 BTN1A1Q13410 526 aa10.01□□□□□ -0.81
CD44-224ENST00000526669 Q86TA4 180 aa10.01□□□□□ -0.81
CD44-224ENST00000526669 TVP23CQ96ET8 276 aa10.01□□□□□ -0.81
CD44-224ENST00000526669 FAM19A4Q96LR4 140 aa10.01□□□□□ -0.81
CD44-224ENST00000526669 ODF3Q96PU9 254 aa10.01□□□□□ -0.81
CD44-224ENST00000526669 B9D2Q9BPU9 175 aa10.01□□□□□ -0.81
CD44-224ENST00000526669 TCEAL7Q9BRU2 100 aa10.01□□□□□ -0.81
CD44-224ENST00000526669 MED9Q9NWA0 146 aa10.01□□□□□ -0.81
CD44-224ENST00000526669 COL7A1Q02388 2944 aa10□□□□□ -0.81
CD44-224ENST00000526669 IGHV3OR16-12A0A075B7B8 117 aa10□□□□□ -0.81
CD44-224ENST00000526669 PDE6DO43924 150 aa10□□□□□ -0.81
CD44-224ENST00000526669 GPX1P07203 203 aa10□□□□□ -0.81
CD44-224ENST00000526669 TSPOP30536 169 aa10□□□□□ -0.81
CD44-224ENST00000526669 RNASE4P34096 147 aaKnown RBP10□□□□□ -0.81
CD44-224ENST00000526669 GFI1BQ5VTD9 330 aa10□□□□□ -0.81
CD44-224ENST00000526669 ZFAND2AQ8N6M9 145 aa10□□□□□ -0.81
CD44-224ENST00000526669 NHLRC2Q8NBF2 726 aa10□□□□□ -0.81
CD44-224ENST00000526669 C11orf52Q96A22 123 aa10□□□□□ -0.81
CD44-224ENST00000526669 FMC1Q96HJ9 113 aa10□□□□□ -0.81
CD44-224ENST00000526669 TREM1Q9NP99 234 aa10□□□□□ -0.81
CD44-224ENST00000526669 TRAV12-3A0A0B4J271 114 aa9.99□□□□□ -0.81
CD44-224ENST00000526669 RAB19A4D1S5 217 aa9.99□□□□□ -0.81
CD44-224ENST00000526669 UBE2CO00762 179 aa9.99□□□□□ -0.81
CD44-224ENST00000526669 INSP01308 110 aa9.99□□□□□ -0.81
CD44-224ENST00000526669 RBMY1A1P0DJD3 496 aaKnown RBP9.99□□□□□ -0.81
CD44-224ENST00000526669 RBMY1CP0DJD4 496 aa9.99□□□□□ -0.81
CD44-224ENST00000526669 CRISP2P16562 243 aa9.99□□□□□ -0.81
CD44-224ENST00000526669 RBMY1FQ15415 496 aaKnown RBP9.99□□□□□ -0.81
CD44-224ENST00000526669 TMEM183BQ1AE95 376 aa9.99□□□□□ -0.81
CD44-224ENST00000526669 Q6ZQT7 251 aa9.99□□□□□ -0.81
CD44-224ENST00000526669 IGF2BP2-AS1Q96M15 143 aa9.99□□□□□ -0.81
CD44-224ENST00000526669 RCHY1Q96PM5 261 aa9.99□□□□□ -0.81
CD44-224ENST00000526669 NDFIP1Q9BT67 221 aa9.99□□□□□ -0.81
CD44-224ENST00000526669 C1QTNF4Q9BXJ3 329 aa9.99□□□□□ -0.81
CD44-224ENST00000526669 C7orf71A4D174 169 aa9.98□□□□□ -0.81
CD44-224ENST00000526669 C9JQL5 133 aa9.98□□□□□ -0.81
CD44-224ENST00000526669 AMBPP02760 352 aa9.98□□□□□ -0.81
CD44-224ENST00000526669 SRP19P09132 144 aaKnown RBP9.98□□□□□ -0.81
CD44-224ENST00000526669 RPL35P42766 123 aaKnown RBP9.98□□□□□ -0.81
CD44-224ENST00000526669 ZNF674Q2M3X9 581 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms