RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 IGKV1-5P01602 117 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 IGKV1D-12P01611 117 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 MAS1P04201 325 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 IGKV3-11P04433 115 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 HIST1H1BP16401 226 aaKnown RBP3.19□□□□□ -1.9
CD44-220ENST00000525688 CXCL5P42830 114 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 RAB5CP51148 216 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 ZNF80P51504 273 aaPredicted RBP3.19□□□□□ -1.9
CD44-220ENST00000525688 TMBIM6P55061 237 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 RBM11P57052 281 aaKnown RBP3.19□□□□□ -1.9
CD44-220ENST00000525688 MSMO1Q15800 293 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 SP6Q3SY56 376 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 BCL2L15Q5TBC7 163 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 SLC48A1Q6P1K1 146 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 RPS19BP1Q86WX3 136 aaKnown RBP3.19□□□□□ -1.9
CD44-220ENST00000525688 Q8N7P7 452 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 MORN4Q8NDC4 146 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 OR2T10Q8NGZ9 312 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 OR4A5Q8NH83 315 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 DCANP1Q8TF63 244 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 PP6455Q8WZ26 134 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 ZNF286AQ9HBT8 521 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 C8orf17Q9NRJ1 99 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 CBLN4Q9NTU7 201 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 CPAMD8Q8IZJ3 1885 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 POLEQ07864 2286 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 DCHS2Q6V1P9 2916 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 PTPN13Q12923 2485 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 DOPEY1Q5JWR5 2465 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 SHANK1Q9Y566 2161 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 TRAV17A0A0B4J275 112 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 IGHV3-66A0A0C4DH42 116 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 ZNF670-ZNF695F2Z2N8 137 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 H0YJW9 148 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 M0R378 163 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 CLPSP04118 112 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 HIST1H2BOP23527 126 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 HIST1H2BBP33778 126 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 SDC2P34741 201 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 NMUP48645 174 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 NDUFA6P56556 154 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 HIST1H2BDP58876 126 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 LYZP61626 148 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 HIST1H2BCP62807 126 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 CCL20P78556 96 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 IGFBP7Q16270 282 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 HIST2H2BEQ16778 126 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.18□□□□□ -1.9
CD44-220ENST00000525688 NOXRED1Q6NXP6 359 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 C16orf47Q6ZP98 133 aaPredicted RBP3.18□□□□□ -1.9
CD44-220ENST00000525688 ZCCHC23Q6ZST2 131 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 OR5C1Q8NGR4 320 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 OR5H6Q8NGV6 325 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 HIST1H2BHQ93079 126 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 RNASE6Q93091 150 aaKnown RBP3.18□□□□□ -1.9
CD44-220ENST00000525688 ZC2HC1AQ96GY0 325 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 HIST1H2BNQ99877 126 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 HIST1H2BMQ99879 126 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 SNHG12Q9BXW3 62 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 TMEM133Q9H2Q1 129 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 ASF1BQ9NVP2 202 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 DNAJC15Q9Y5T4 150 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 SOX21Q9Y651 276 aaPredicted RBP3.18□□□□□ -1.9
CD44-220ENST00000525688 SPTAN1Q13813 2472 aaKnown RBP3.18□□□□□ -1.9
CD44-220ENST00000525688 TEP1Q99973 2627 aaKnown RBP3.18□□□□□ -1.9
CD44-220ENST00000525688 HIVEP3Q5T1R4 2406 aa3.18□□□□□ -1.9
CD44-220ENST00000525688 IGHV7-4-1A0A0J9YVY3 117 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 A0A1B0GW54 56 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 OR2T1O43869 369 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 LINC00032P0C843 101 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 AKAIN1P0CW23 69 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 ZNF32P17041 273 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 ATP6V0CP27449 155 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 PSMB8P28062 276 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 GUCA1AP43080 201 aaPredicted RBP3.17□□□□□ -1.9
CD44-220ENST00000525688 NUDT2P50583 147 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 ZNF136P52737 540 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 GNB2P62879 340 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 NDPQ00604 133 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 BSPH1Q075Z2 132 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 ZNF79Q15937 498 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 ZNF791Q3KP31 576 aaPredicted RBP3.17□□□□□ -1.9
CD44-220ENST00000525688 RPL22L1Q6P5R6 122 aaKnown RBP3.17□□□□□ -1.9
CD44-220ENST00000525688 C3orf22Q8N5N4 141 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 FER1L6-AS1Q8NA97 138 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 ZFP62Q8NB50 900 aaPredicted RBP3.17□□□□□ -1.9
CD44-220ENST00000525688 C20orf203Q8NBC4 194 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 OR4K13Q8NH42 304 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 RMI2Q96E14 147 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 ZNF414Q96IQ9 312 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 OR4C12Q96R67 309 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 B9D2Q9BPU9 175 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 NAA38Q9BRA0 125 aaKnown RBP3.17□□□□□ -1.9
CD44-220ENST00000525688 HDHD3Q9BSH5 251 aaPredicted RBP3.17□□□□□ -1.9
CD44-220ENST00000525688 TSSK6Q9BXA6 273 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 TMEM191AQ9H0A3 160 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 TET2Q6N021 2002 aaPredicted RBP3.17□□□□□ -1.9
CD44-220ENST00000525688 LRBAP50851 2863 aa3.17□□□□□ -1.9
CD44-220ENST00000525688 SVILO95425 2214 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 SPTBN1Q01082 2364 aaKnown RBP3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms