RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ZNF318Q5VUA4 2279 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 CC2D2AQ9P2K1 1620 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 FANCMQ8IYD8 2048 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 ANKRD36BQ8N2N9 1353 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 STRCQ7RTU9 1775 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 MYH7BA7E2Y1 1941 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 MYH7P12883 1935 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 MYLKQ15746 1914 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 WDR81Q562E7 1941 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 DSCAML1Q8TD84 2053 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGHV3-64A0A075B6Q5 118 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 A0A087WSZ3 146 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 UQCRHLA0A096LP55 91 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGKV2D-26A0A0A0MRZ7 120 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGHV1-24A0A0C4DH33 117 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 MUC21A0A0G2JKD1 596 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 A0A0J9YX75 114 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 C3orf85A0A1B0GTC6 90 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 LOC100130705A0A1B0GUX0 176 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 A0A1B0GVG6 124 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 MDFIC2A0A1B0GVS7 189 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 A0A1W2PRS3 328 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 FAM24AA6NFZ4 105 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 A6NN06 94 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 HMSDA8MTL9 139 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF705FA8MVS1 300 aaPredicted RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF736B4DX44 427 aaPredicted RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 MCRIP1C9JLW8 97 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 E7EUB6 86 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 TMEM262E9PQX1 116 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 G3V3Q6 166 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 H3BQ15 152 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 CCDC179H3BU77 68 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 RPL36A-HNRNPH2H7BZ11 118 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 GEMIN2O14893 280 aaKnown RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 SSSCA1O60232 199 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 EDF1O60869 148 aaKnown RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF737O75373 536 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 ERC2-IT1O76042 136 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 SNCGO76070 127 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 MPC2O95563 127 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 SHBGP04278 402 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 GYPBP06028 91 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 UQCRHP07919 91 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 CD14P08571 375 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 KRTAP1-4P0C5Y4 121 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 SPINK8P0C7L1 97 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 CXCL8P10145 99 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 SLC25A4P12235 298 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 PIPP12273 146 aaPredicted RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 MIFP14174 115 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF22P17026 224 aaPredicted RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 PEBP1P30086 187 aaKnown RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 CKS2P33552 79 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 HINT1P49773 126 aaPredicted RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 POLR2JP52435 117 aaKnown RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 ATP5EP56381 51 aaPredicted RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 DSCR4P56555 118 aaPredicted RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 KRTAP10-1P60331 282 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 ROMO1P60602 79 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 S100A10P60903 97 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 NPC2P61916 151 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 BLCAPP62952 87 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 UBA52P62987 128 aaKnown RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 NDPQ00604 133 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 CIRBPQ14011 172 aaKnown RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF345Q14585 488 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF846Q147U1 533 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGFBP7Q16270 282 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 NNATQ16517 81 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 LY6EQ16553 131 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 NCMAPQ5T1S8 102 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 KPRPQ5T749 579 aaPredicted RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 LCE1CQ5T751 118 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 LCE1BQ5T7P3 118 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 C9orf153Q5TBE3 101 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 SPANXN1Q5VSR9 72 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 MIC13Q5XKP0 118 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR2T2Q6IF00 324 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 Q6P435 159 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 C2orf82Q6UX34 121 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 PP632Q6XCG6 107 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 CASC2Q6XLA1 102 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 Q6ZQT0 140 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 TMEM136Q6ZRR5 245 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 ARPINQ7Z6K5 226 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 HMGN2P46Q86SG4 172 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 LYPD6Q86Y78 171 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 SNX29P2Q8IUI4 249 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 Q8IYB0 196 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 C3orf56Q8N813 242 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 Q8N814 137 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 C5orf17Q8NAS9 161 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 C1orf64Q8NEQ6 169 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR4X2Q8NGF9 303 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR2T35Q8NGX2 323 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 OTOSQ8NHW6 89 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 VSTM2AQ8TAG5 236 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 CMTM2Q8TAZ6 248 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 TMEM254Q8TBM7 123 aa0.35□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms