RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 TCRAP04437 139 aa10.96□□□□□ -0.65
NUP54-213ENST00000513352 CT45A10P0DMU9 189 aa10.96□□□□□ -0.65
NUP54-213ENST00000513352 TSPOP30536 169 aa10.96□□□□□ -0.65
NUP54-213ENST00000513352 LEPP41159 167 aa10.96□□□□□ -0.65
NUP54-213ENST00000513352 AMTNQ6UX39 209 aa10.96□□□□□ -0.65
NUP54-213ENST00000513352 CYB561D1Q8N8Q1 229 aa10.96□□□□□ -0.65
NUP54-213ENST00000513352 LINC00477Q96M19 166 aa10.96□□□□□ -0.65
NUP54-213ENST00000513352 SPATA25Q9BR10 227 aa10.96□□□□□ -0.65
NUP54-213ENST00000513352 ATG101Q9BSB4 218 aa10.96□□□□□ -0.65
NUP54-213ENST00000513352 C1QTNF4Q9BXJ3 329 aa10.96□□□□□ -0.65
NUP54-213ENST00000513352 AGPAT4-IT1Q9H0P7 198 aa10.96□□□□□ -0.65
NUP54-213ENST00000513352 TRAV12-2A0A075B6T6 113 aa10.95□□□□□ -0.66
NUP54-213ENST00000513352 SERTM2A0A1B0GWG4 89 aa10.95□□□□□ -0.66
NUP54-213ENST00000513352 F6UZH7 168 aa10.95□□□□□ -0.66
NUP54-213ENST00000513352 AMBPP02760 352 aa10.95□□□□□ -0.66
NUP54-213ENST00000513352 ZNF138P52744 262 aa10.95□□□□□ -0.66
NUP54-213ENST00000513352 C9orf47Q6ZRZ4 202 aa10.95□□□□□ -0.66
NUP54-213ENST00000513352 ARL6IP6Q8N6S5 226 aa10.95□□□□□ -0.66
NUP54-213ENST00000513352 SGK494Q96LW2 274 aa10.95□□□□□ -0.66
NUP54-213ENST00000513352 RCHY1Q96PM5 261 aa10.95□□□□□ -0.66
NUP54-213ENST00000513352 IGHV3OR16-12A0A075B7B8 117 aa10.94□□□□□ -0.66
NUP54-213ENST00000513352 TRAV8-1A0A0A6YYK1 113 aa10.94□□□□□ -0.66
NUP54-213ENST00000513352 GIG44P09565 113 aaPredicted RBP10.94□□□□□ -0.66
NUP54-213ENST00000513352 BCL2P10415 239 aa10.94□□□□□ -0.66
NUP54-213ENST00000513352 AKR1C3P42330 323 aa10.94□□□□□ -0.66
NUP54-213ENST00000513352 RAB14P61106 215 aa10.94□□□□□ -0.66
NUP54-213ENST00000513352 Q6ZWC4 215 aa10.94□□□□□ -0.66
NUP54-213ENST00000513352 HIST1H2BAQ96A08 127 aa10.94□□□□□ -0.66
NUP54-213ENST00000513352 ZNF492Q9P255 531 aa10.94□□□□□ -0.66
NUP54-213ENST00000513352 TRAV34A0A0B4J273 112 aa10.93□□□□□ -0.66
NUP54-213ENST00000513352 SCO2A0A1W2PP80 73 aa10.93□□□□□ -0.66
NUP54-213ENST00000513352 SPRY2O43597 315 aa10.93□□□□□ -0.66
NUP54-213ENST00000513352 INSP01308 110 aa10.93□□□□□ -0.66
NUP54-213ENST00000513352 CDKN1BP46527 198 aa10.93□□□□□ -0.66
NUP54-213ENST00000513352 PRNTQ86SH4 94 aa10.93□□□□□ -0.66
NUP54-213ENST00000513352 ODF3Q96PU9 254 aa10.93□□□□□ -0.66
NUP54-213ENST00000513352 TM2D3Q9BRN9 247 aa10.93□□□□□ -0.66
NUP54-213ENST00000513352 TCEAL7Q9BRU2 100 aa10.93□□□□□ -0.66
NUP54-213ENST00000513352 NDFIP1Q9BT67 221 aa10.93□□□□□ -0.66
NUP54-213ENST00000513352 TMEM208Q9BTX3 173 aa10.93□□□□□ -0.66
NUP54-213ENST00000513352 VAX2Q9UIW0 290 aa10.93□□□□□ -0.66
NUP54-213ENST00000513352 NHLRC4P0CG21 123 aaPredicted RBP10.92□□□□□ -0.66
NUP54-213ENST00000513352 TAGLN2P37802 199 aaKnown RBP10.92□□□□□ -0.66
NUP54-213ENST00000513352 UBE2G1P62253 170 aa10.92□□□□□ -0.66
NUP54-213ENST00000513352 ZNF767PQ75MW2 155 aa10.92□□□□□ -0.66
NUP54-213ENST00000513352 CCDC28AQ8IWP9 274 aa10.92□□□□□ -0.66
NUP54-213ENST00000513352 TMEM75Q8N9X5 138 aa10.92□□□□□ -0.66
NUP54-213ENST00000513352 RNF183Q96D59 192 aa10.92□□□□□ -0.66
NUP54-213ENST00000513352 IGF2BP2-AS1Q96M15 143 aa10.92□□□□□ -0.66
NUP54-213ENST00000513352 LINC00479Q96M42 142 aa10.92□□□□□ -0.66
NUP54-213ENST00000513352 PSG8Q9UQ74 426 aa10.92□□□□□ -0.66
NUP54-213ENST00000513352 GOLT1BQ9Y3E0 138 aa10.92□□□□□ -0.66
NUP54-213ENST00000513352 LOC102723971A0A1B0GUV8 181 aa10.91□□□□□ -0.66
NUP54-213ENST00000513352 RBFOX3A6NFN3 312 aa10.91□□□□□ -0.66
NUP54-213ENST00000513352 GPX1P07203 203 aa10.91□□□□□ -0.66
NUP54-213ENST00000513352 NMBP08949 121 aa10.91□□□□□ -0.66
NUP54-213ENST00000513352 FLI1Q01543 452 aaPredicted RBP10.91□□□□□ -0.66
NUP54-213ENST00000513352 MEF2BQ02080 365 aaPredicted RBP10.91□□□□□ -0.66
NUP54-213ENST00000513352 TOR2AQ5JU69 321 aa10.91□□□□□ -0.66
NUP54-213ENST00000513352 LYPD6BQ8NI32 183 aa10.91□□□□□ -0.66
NUP54-213ENST00000513352 RARRES2Q99969 163 aa10.91□□□□□ -0.66
NUP54-213ENST00000513352 TXNDC17Q9BRA2 123 aa10.91□□□□□ -0.66
NUP54-213ENST00000513352 OVOL2Q9BRP0 275 aa10.91□□□□□ -0.66
NUP54-213ENST00000513352 EIF5A2Q9GZV4 153 aaKnown RBP10.91□□□□□ -0.66
NUP54-213ENST00000513352 C7orf71A4D174 169 aa10.9□□□□□ -0.66
NUP54-213ENST00000513352 RNASE4P34096 147 aaKnown RBP10.9□□□□□ -0.66
NUP54-213ENST00000513352 IFITM2Q01629 132 aa10.9□□□□□ -0.66
NUP54-213ENST00000513352 BTN1A1Q13410 526 aa10.9□□□□□ -0.66
NUP54-213ENST00000513352 PMS2P11Q13670 270 aa10.9□□□□□ -0.66
NUP54-213ENST00000513352 KIR3DS1Q14943 382 aa10.9□□□□□ -0.66
NUP54-213ENST00000513352 GFI1BQ5VTD9 330 aa10.9□□□□□ -0.66
NUP54-213ENST00000513352 OR11H2Q8NH07 326 aa10.9□□□□□ -0.66
NUP54-213ENST00000513352 FMC1Q96HJ9 113 aa10.9□□□□□ -0.66
NUP54-213ENST00000513352 TREM1Q9NP99 234 aa10.9□□□□□ -0.66
NUP54-213ENST00000513352 TP53TG1Q9Y2A0 90 aa10.9□□□□□ -0.66
NUP54-213ENST00000513352 TRAV12-3A0A0B4J271 114 aa10.89□□□□□ -0.67
NUP54-213ENST00000513352 FBLL1A6NHQ2 334 aaKnown RBP10.89□□□□□ -0.67
NUP54-213ENST00000513352 CRXO43186 299 aaPredicted RBP10.89□□□□□ -0.67
NUP54-213ENST00000513352 PDE6DO43924 150 aa10.89□□□□□ -0.67
NUP54-213ENST00000513352 CRISP2P16562 243 aa10.89□□□□□ -0.67
NUP54-213ENST00000513352 Q86TA4 180 aa10.89□□□□□ -0.67
NUP54-213ENST00000513352 ZFAND2AQ8N6M9 145 aa10.89□□□□□ -0.67
NUP54-213ENST00000513352 CSNK1G2-AS1Q8NCQ2 148 aa10.89□□□□□ -0.67
NUP54-213ENST00000513352 FAM19A4Q96LR4 140 aa10.89□□□□□ -0.67
NUP54-213ENST00000513352 NIPSNAP3BQ9BS92 247 aa10.89□□□□□ -0.67
NUP54-213ENST00000513352 LENEPQ9Y5L5 61 aa10.89□□□□□ -0.67
NUP54-213ENST00000513352 NBEAL2Q6ZNJ1 2754 aa10.88□□□□□ -0.67
NUP54-213ENST00000513352 IGLV2-11P01706 119 aa10.88□□□□□ -0.67
NUP54-213ENST00000513352 CEBPGP53567 150 aa10.88□□□□□ -0.67
NUP54-213ENST00000513352 ZNF506Q5JVG8 444 aa10.88□□□□□ -0.67
NUP54-213ENST00000513352 PRR9Q5T870 116 aa10.88□□□□□ -0.67
NUP54-213ENST00000513352 C1orf158Q8N1D5 194 aa10.88□□□□□ -0.67
NUP54-213ENST00000513352 FAM210AQ96ND0 272 aa10.88□□□□□ -0.67
NUP54-213ENST00000513352 C8orf49Q96NF6 230 aa10.88□□□□□ -0.67
NUP54-213ENST00000513352 LINC01587Q99440 93 aa10.88□□□□□ -0.67
NUP54-213ENST00000513352 MED9Q9NWA0 146 aa10.88□□□□□ -0.67
NUP54-213ENST00000513352 TRBV7-9A0A0J9YWB2 115 aa10.87□□□□□ -0.67
NUP54-213ENST00000513352 KLLNB2CW77 178 aa10.87□□□□□ -0.67
NUP54-213ENST00000513352 HTN1P15515 57 aa10.87□□□□□ -0.67
NUP54-213ENST00000513352 LCE2DQ5TA82 110 aaPredicted RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 176.5 ms