RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 RBMY1CP0DJD4 496 aa12.22□□□□□ -0.45
SCAF11-206ENST00000474828 FHITP49789 147 aa12.22□□□□□ -0.45
SCAF11-206ENST00000474828 RBMY1FQ15415 496 aaKnown RBP12.22□□□□□ -0.45
SCAF11-206ENST00000474828 ZNF492Q9P255 531 aa12.22□□□□□ -0.45
SCAF11-206ENST00000474828 DYNC2H1Q8NCM8 4307 aaKnown RBP12.22□□□□□ -0.45
SCAF11-206ENST00000474828 MAP1LC3B2A6NCE7 125 aa12.21□□□□□ -0.45
SCAF11-206ENST00000474828 PGPA6NDG6 321 aa12.21□□□□□ -0.45
SCAF11-206ENST00000474828 INSP01308 110 aa12.21□□□□□ -0.45
SCAF11-206ENST00000474828 PRB4P10163 310 aaPredicted RBP12.21□□□□□ -0.45
SCAF11-206ENST00000474828 TSPOP30536 169 aa12.21□□□□□ -0.45
SCAF11-206ENST00000474828 CSN1S1P47710 185 aa12.21□□□□□ -0.45
SCAF11-206ENST00000474828 RAB5CP51148 216 aa12.21□□□□□ -0.45
SCAF11-206ENST00000474828 FAM74A1Q5RGS3 127 aa12.21□□□□□ -0.45
SCAF11-206ENST00000474828 EIF5AL1Q6IS14 154 aaKnown RBP12.21□□□□□ -0.45
SCAF11-206ENST00000474828 TMEM256Q8N2U0 113 aa12.21□□□□□ -0.45
SCAF11-206ENST00000474828 MUC7Q8TAX7 377 aa12.21□□□□□ -0.45
SCAF11-206ENST00000474828 VGLL1Q99990 258 aa12.21□□□□□ -0.45
SCAF11-206ENST00000474828 MAP1LC3BQ9GZQ8 125 aa12.21□□□□□ -0.45
SCAF11-206ENST00000474828 GOLT1BQ9Y3E0 138 aa12.21□□□□□ -0.45
SCAF11-206ENST00000474828 LENEPQ9Y5L5 61 aa12.21□□□□□ -0.45
SCAF11-206ENST00000474828 ARL2-SNX15V9GYD0 113 aa12.21□□□□□ -0.45
SCAF11-206ENST00000474828 STARD9Q9P2P6 4700 aa12.2□□□□□ -0.46
SCAF11-206ENST00000474828 IGKV2-40A0A087WW87 121 aaPredicted RBP12.2□□□□□ -0.46
SCAF11-206ENST00000474828 TRAV1-1A0A0B4J248 108 aa12.2□□□□□ -0.46
SCAF11-206ENST00000474828 IGHV4-28A0A0C4DH34 117 aa12.2□□□□□ -0.46
SCAF11-206ENST00000474828 GGTLC3B5MD39 225 aa12.2□□□□□ -0.46
SCAF11-206ENST00000474828 C3orf84H3BNL1 204 aa12.2□□□□□ -0.46
SCAF11-206ENST00000474828 IGKV2D-40P01614 121 aaPredicted RBP12.2□□□□□ -0.46
SCAF11-206ENST00000474828 ERCC8Q13216 396 aa12.2□□□□□ -0.46
SCAF11-206ENST00000474828 C5orf17Q8NAS9 161 aa12.2□□□□□ -0.46
SCAF11-206ENST00000474828 SERTM2A0A1B0GWG4 89 aa12.19□□□□□ -0.46
SCAF11-206ENST00000474828 LEPP41159 167 aa12.19□□□□□ -0.46
SCAF11-206ENST00000474828 SULT1A2P50226 295 aa12.19□□□□□ -0.46
SCAF11-206ENST00000474828 ZNF138P52744 262 aa12.19□□□□□ -0.46
SCAF11-206ENST00000474828 KIR3DS1Q14943 382 aa12.19□□□□□ -0.46
SCAF11-206ENST00000474828 GFI1BQ5VTD9 330 aa12.19□□□□□ -0.46
SCAF11-206ENST00000474828 CCDC28AQ8IWP9 274 aa12.19□□□□□ -0.46
SCAF11-206ENST00000474828 ZFAND2AQ8N6M9 145 aa12.19□□□□□ -0.46
SCAF11-206ENST00000474828 IL17DQ8TAD2 202 aa12.19□□□□□ -0.46
SCAF11-206ENST00000474828 NKX6-2Q9C056 277 aaPredicted RBP12.19□□□□□ -0.46
SCAF11-206ENST00000474828 TMPRSS5Q9H3S3 457 aa12.19□□□□□ -0.46
SCAF11-206ENST00000474828 KMT2CQ8NEZ4 4911 aaKnown RBP12.18□□□□□ -0.46
SCAF11-206ENST00000474828 TRAV12-2A0A075B6T6 113 aa12.18□□□□□ -0.46
SCAF11-206ENST00000474828 TMEM78Q5T7P6 136 aa12.18□□□□□ -0.46
SCAF11-206ENST00000474828 YTHDF2Q9Y5A9 579 aaKnown RBP12.18□□□□□ -0.46
SCAF11-206ENST00000474828 FAM74A7A6NL05 159 aa12.17□□□□□ -0.46
SCAF11-206ENST00000474828 ZNF324O75467 553 aaPredicted RBP12.17□□□□□ -0.46
SCAF11-206ENST00000474828 TCRAP04437 139 aa12.17□□□□□ -0.46
SCAF11-206ENST00000474828 FGF8P55075 233 aaPredicted RBP12.17□□□□□ -0.46
SCAF11-206ENST00000474828 SUMO1P63165 101 aaKnown RBP12.17□□□□□ -0.46
SCAF11-206ENST00000474828 FAM213BQ8TBF2 198 aa12.17□□□□□ -0.46
SCAF11-206ENST00000474828 LINC00467Q9BRT7 94 aa12.17□□□□□ -0.46
SCAF11-206ENST00000474828 EPDR1Q9UM22 224 aa12.17□□□□□ -0.46
SCAF11-206ENST00000474828 TMEM189A5PLL7 270 aa12.16□□□□□ -0.46
SCAF11-206ENST00000474828 H7BYZ3 331 aa12.16□□□□□ -0.46
SCAF11-206ENST00000474828 TAS2R60P59551 318 aa12.16□□□□□ -0.46
SCAF11-206ENST00000474828 PMS2P11Q13670 270 aa12.16□□□□□ -0.46
SCAF11-206ENST00000474828 CMTM2Q8TAZ6 248 aa12.16□□□□□ -0.46
SCAF11-206ENST00000474828 TCEAL7Q9BRU2 100 aa12.16□□□□□ -0.46
SCAF11-206ENST00000474828 PLAC8L1A1L4L8 177 aa12.15□□□□□ -0.46
SCAF11-206ENST00000474828 FBLL1A6NHQ2 334 aaKnown RBP12.15□□□□□ -0.46
SCAF11-206ENST00000474828 IGLV2-11P01706 119 aa12.15□□□□□ -0.46
SCAF11-206ENST00000474828 HBE1P02100 147 aa12.15□□□□□ -0.46
SCAF11-206ENST00000474828 H2AFB1P0C5Y9 115 aa12.15□□□□□ -0.46
SCAF11-206ENST00000474828 SFT2D1Q8WV19 159 aa12.15□□□□□ -0.46
SCAF11-206ENST00000474828 C7orf71A4D174 169 aa12.14□□□□□ -0.47
SCAF11-206ENST00000474828 RRN3P1Q2M238 152 aa12.14□□□□□ -0.47
SCAF11-206ENST00000474828 CASC10Q5T4H9 136 aa12.14□□□□□ -0.47
SCAF11-206ENST00000474828 PRR9Q5T870 116 aa12.14□□□□□ -0.47
SCAF11-206ENST00000474828 GOLT1AQ6ZVE7 132 aa12.14□□□□□ -0.47
SCAF11-206ENST00000474828 ATG101Q9BSB4 218 aa12.14□□□□□ -0.47
SCAF11-206ENST00000474828 DEFB4AO15263 64 aa12.13□□□□□ -0.47
SCAF11-206ENST00000474828 NKX2-5P52952 324 aaPredicted RBP12.13□□□□□ -0.47
SCAF11-206ENST00000474828 GNG5P63218 68 aa12.13□□□□□ -0.47
SCAF11-206ENST00000474828 Q6AWC8 147 aa12.13□□□□□ -0.47
SCAF11-206ENST00000474828 ZNF493Q6ZR52 646 aa12.13□□□□□ -0.47
SCAF11-206ENST00000474828 CYB561D1Q8N8Q1 229 aa12.13□□□□□ -0.47
SCAF11-206ENST00000474828 Q8TAT8 98 aa12.13□□□□□ -0.47
SCAF11-206ENST00000474828 RNASE8Q8TDE3 154 aaKnown RBP12.13□□□□□ -0.47
SCAF11-206ENST00000474828 HIST1H2BAQ96A08 127 aa12.13□□□□□ -0.47
SCAF11-206ENST00000474828 TVP23CQ96ET8 276 aa12.13□□□□□ -0.47
SCAF11-206ENST00000474828 PYGO2Q9BRQ0 406 aa12.13□□□□□ -0.47
SCAF11-206ENST00000474828 KLF12Q9Y4X4 402 aa12.13□□□□□ -0.47
SCAF11-206ENST00000474828 IGHV3OR16-12A0A075B7B8 117 aa12.12□□□□□ -0.47
SCAF11-206ENST00000474828 LOC102723971A0A1B0GUV8 181 aa12.12□□□□□ -0.47
SCAF11-206ENST00000474828 PPT1P50897 306 aa12.12□□□□□ -0.47
SCAF11-206ENST00000474828 TMEM75Q8N9X5 138 aa12.12□□□□□ -0.47
SCAF11-206ENST00000474828 C11orf45Q8TAV5 145 aa12.12□□□□□ -0.47
SCAF11-206ENST00000474828 LINC01587Q99440 93 aa12.12□□□□□ -0.47
SCAF11-206ENST00000474828 TMEM208Q9BTX3 173 aa12.12□□□□□ -0.47
SCAF11-206ENST00000474828 PLECQ15149 4684 aaKnown RBP12.11□□□□□ -0.47
SCAF11-206ENST00000474828 TRAV8-1A0A0A6YYK1 113 aa12.11□□□□□ -0.47
SCAF11-206ENST00000474828 TRAV12-3A0A0B4J271 114 aa12.11□□□□□ -0.47
SCAF11-206ENST00000474828 GPX1P07203 203 aa12.11□□□□□ -0.47
SCAF11-206ENST00000474828 AZU1P20160 251 aa12.11□□□□□ -0.47
SCAF11-206ENST00000474828 BTN1A1Q13410 526 aa12.11□□□□□ -0.47
SCAF11-206ENST00000474828 COX8CQ7Z4L0 72 aa12.11□□□□□ -0.47
SCAF11-206ENST00000474828 IQCF2Q8IXL9 164 aa12.11□□□□□ -0.47
SCAF11-206ENST00000474828 NIPSNAP3BQ9BS92 247 aa12.11□□□□□ -0.47
SCAF11-206ENST00000474828 DKK2Q9UBU2 259 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 129.3 ms