RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SPRR3Q9UBC9 169 aa4.21□□□□□ -1.73
SYNE1-220ENST00000471834 EML6Q6ZMW3 1958 aa4.21□□□□□ -1.73
SYNE1-220ENST00000471834 MED12Q93074 2177 aa4.21□□□□□ -1.74
SYNE1-220ENST00000471834 UTF1Q5T230 341 aa4.21□□□□□ -1.74
SYNE1-220ENST00000471834 FAM104BQ5XKR9 115 aa4.21□□□□□ -1.74
SYNE1-220ENST00000471834 M0R381 172 aa4.21□□□□□ -1.74
SYNE1-220ENST00000471834 NPIPB3Q92617 1050 aa4.21□□□□□ -1.74
SYNE1-220ENST00000471834 CITED1Q99966 193 aa4.21□□□□□ -1.74
SYNE1-220ENST00000471834 TRAV12-3A0A0B4J271 114 aa4.21□□□□□ -1.74
SYNE1-220ENST00000471834 SAMD13Q5VXD3 122 aa4.21□□□□□ -1.74
SYNE1-220ENST00000471834 Q6ZVH6 145 aa4.21□□□□□ -1.74
SYNE1-220ENST00000471834 CIARTQ8N365 385 aaPredicted RBP4.21□□□□□ -1.74
SYNE1-220ENST00000471834 MRPL20Q9BYC9 149 aaKnown RBP4.21□□□□□ -1.74
SYNE1-220ENST00000471834 Q9H3A6 140 aa4.21□□□□□ -1.74
SYNE1-220ENST00000471834 LINC00173Q6ZV60 143 aa4.21□□□□□ -1.74
SYNE1-220ENST00000471834 FBXL15Q9H469 300 aa4.21□□□□□ -1.74
SYNE1-220ENST00000471834 IGHV3-73A0A0B4J1V6 119 aa4.21□□□□□ -1.74
SYNE1-220ENST00000471834 TMEM170BQ5T4T1 132 aa4.21□□□□□ -1.74
SYNE1-220ENST00000471834 TMEM101Q96IK0 257 aa4.21□□□□□ -1.74
SYNE1-220ENST00000471834 SPANXA1Q9NS26 97 aa4.21□□□□□ -1.74
SYNE1-220ENST00000471834 FAM159AQ6UWV7 190 aa4.2□□□□□ -1.74
SYNE1-220ENST00000471834 TMEM186Q96B77 213 aa4.2□□□□□ -1.74
SYNE1-220ENST00000471834 OTORQ9NRC9 128 aa4.2□□□□□ -1.74
SYNE1-220ENST00000471834 ZNF256Q9Y2P7 627 aaPredicted RBP4.2□□□□□ -1.74
SYNE1-220ENST00000471834 SLC25A15Q9Y619 301 aa4.2□□□□□ -1.74
SYNE1-220ENST00000471834 TRBV19A0A075B6N1 114 aa4.2□□□□□ -1.74
SYNE1-220ENST00000471834 IGHV4OR15-8A0A075B7B6 117 aa4.2□□□□□ -1.74
SYNE1-220ENST00000471834 A0A087WW49 117 aa4.2□□□□□ -1.74
SYNE1-220ENST00000471834 SAA2P0DJI9 122 aaPredicted RBP4.2□□□□□ -1.74
SYNE1-220ENST00000471834 MC5RP33032 325 aa4.2□□□□□ -1.74
SYNE1-220ENST00000471834 GLRXP35754 106 aa4.2□□□□□ -1.74
SYNE1-220ENST00000471834 ABCA7Q8IZY2 2146 aa4.2□□□□□ -1.74
SYNE1-220ENST00000471834 SNRPD3P62318 126 aaKnown RBP4.2□□□□□ -1.74
SYNE1-220ENST00000471834 TMEM95Q3KNT9 176 aa4.2□□□□□ -1.74
SYNE1-220ENST00000471834 Q6Q795 121 aa4.2□□□□□ -1.74
SYNE1-220ENST00000471834 GEMIN7Q9H840 131 aaKnown RBP4.2□□□□□ -1.74
SYNE1-220ENST00000471834 TNCP24821 2201 aa4.2□□□□□ -1.74
SYNE1-220ENST00000471834 CHD3Q12873 2000 aaKnown RBP4.2□□□□□ -1.74
SYNE1-220ENST00000471834 AMN1Q8IY45 258 aa4.2□□□□□ -1.74
SYNE1-220ENST00000471834 LINC01587Q99440 93 aa4.2□□□□□ -1.74
SYNE1-220ENST00000471834 A0A0G2JLM5 398 aa4.2□□□□□ -1.74
SYNE1-220ENST00000471834 A0A1W2PPM0 123 aa4.2□□□□□ -1.74
SYNE1-220ENST00000471834 K7ENP7 123 aa4.2□□□□□ -1.74
SYNE1-220ENST00000471834 CD300EQ496F6 205 aaPredicted RBP4.2□□□□□ -1.74
SYNE1-220ENST00000471834 A0A1W2PNU3 283 aaPredicted RBP4.19□□□□□ -1.74
SYNE1-220ENST00000471834 HIGD1CA8MV81 97 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 EDA2RQ9HAV5 297 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 LINC01549A6NIU2 74 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 LY6LH3BQJ8 138 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 FSHBP01225 129 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 CACNG7P62955 275 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 SFTA2Q6UW10 78 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 PPP1R27Q86WC6 154 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 CACNA1HO95180 2353 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 TEX22C9J3V5 150 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 F8W1H4 67 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 I3L2K1 104 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 CA1P00915 261 aaPredicted RBP4.19□□□□□ -1.74
SYNE1-220ENST00000471834 PPIFP30405 207 aaKnown RBP4.19□□□□□ -1.74
SYNE1-220ENST00000471834 SUMO2P61956 95 aaKnown RBP4.19□□□□□ -1.74
SYNE1-220ENST00000471834 CIRBPQ14011 172 aaKnown RBP4.19□□□□□ -1.74
SYNE1-220ENST00000471834 CFAP126Q5VTH2 177 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 TTC9CQ8N5M4 171 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 SCGB3A1Q96QR1 104 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 SHANK2-AS3Q9BTD1 123 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 U3KQE9 123 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 ZNF318Q5VUA4 2279 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 CDK2AP2O75956 126 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 MALP21145 153 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 KLRD1Q13241 179 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 TMEM155Q4W5P6 130 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 STHQ8IWL8 128 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 BCL6BQ8N143 479 aaPredicted RBP4.19□□□□□ -1.74
SYNE1-220ENST00000471834 LENEPQ9Y5L5 61 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 LYNX1G3V0Z9 82 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 LYNX1P0DP58 116 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 IGFL3Q6UXB1 125 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 PRELID3AQ96N28 172 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 MEGF9Q9H1U4 602 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 CDIP1Q9H305 208 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 CREBBPQ92793 2442 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 A0A087X0K7 114 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 IGHV3-11P01762 117 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 PSG1P11464 419 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 MORN3Q6PF18 240 aaPredicted RBP4.19□□□□□ -1.74
SYNE1-220ENST00000471834 SIGMAR1Q99720 223 aa4.19□□□□□ -1.74
SYNE1-220ENST00000471834 A0A1B0GUT8 65 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 CD59P13987 128 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 TNFRSF18Q9Y5U5 241 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 ANKHD1Q8IWZ3 2542 aaKnown RBP4.18□□□□□ -1.74
SYNE1-220ENST00000471834 CECR9P0C854 216 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 ASIPP42127 132 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 CRIP2P52943 208 aaPredicted RBP4.18□□□□□ -1.74
SYNE1-220ENST00000471834 Q8N6K4 173 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 C9orf106Q8NAJ2 232 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 GAFA1Q96PS6 74 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 ZNF580Q9UK33 172 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 IGKV2-40A0A087WW87 121 aaPredicted RBP4.18□□□□□ -1.74
SYNE1-220ENST00000471834 F8W735 103 aaPredicted RBP4.18□□□□□ -1.74
SYNE1-220ENST00000471834 IGKV2D-40P01614 121 aaPredicted RBP4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms