RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 NPIPB6E9PJ23 425 aa7.08□□□□□ -1.28
VPS52-216ENST00000471309 OVOL1O14753 267 aa7.08□□□□□ -1.28
VPS52-216ENST00000471309 GATCO43716 136 aaKnown RBP7.08□□□□□ -1.28
VPS52-216ENST00000471309 CT45A10P0DMU9 189 aa7.08□□□□□ -1.28
VPS52-216ENST00000471309 KRTAP21-3Q3LHN1 58 aa7.08□□□□□ -1.28
VPS52-216ENST00000471309 CT83Q5H943 113 aa7.08□□□□□ -1.28
VPS52-216ENST00000471309 ADAMTSL5Q6ZMM2 481 aa7.08□□□□□ -1.28
VPS52-216ENST00000471309 C9orf47Q6ZRZ4 202 aa7.08□□□□□ -1.28
VPS52-216ENST00000471309 C11orf44Q8N8P7 122 aa7.08□□□□□ -1.28
VPS52-216ENST00000471309 ZNF738Q8NE65 137 aa7.08□□□□□ -1.28
VPS52-216ENST00000471309 NUDT10Q8NFP7 164 aa7.08□□□□□ -1.28
VPS52-216ENST00000471309 DLX4Q92988 240 aaPredicted RBP7.08□□□□□ -1.28
VPS52-216ENST00000471309 NUDT11Q96G61 164 aa7.08□□□□□ -1.28
VPS52-216ENST00000471309 ZC2HC1AQ96GY0 325 aa7.08□□□□□ -1.28
VPS52-216ENST00000471309 C20orf173Q96LM9 149 aa7.08□□□□□ -1.28
VPS52-216ENST00000471309 PRR25Q96S07 402 aa7.08□□□□□ -1.28
VPS52-216ENST00000471309 MS4A6AQ9H2W1 248 aa7.08□□□□□ -1.28
VPS52-216ENST00000471309 RPP21Q9H633 154 aaKnown RBP7.08□□□□□ -1.28
VPS52-216ENST00000471309 PPP1R14DQ9NXH3 145 aa7.08□□□□□ -1.28
VPS52-216ENST00000471309 TRAV2A0A0B4J234 112 aa7.07□□□□□ -1.28
VPS52-216ENST00000471309 A0A1W2PPQ1 181 aa7.07□□□□□ -1.28
VPS52-216ENST00000471309 A0A1W2PRX2 142 aa7.07□□□□□ -1.28
VPS52-216ENST00000471309 SMIM27A0A1W2PRY6 76 aa7.07□□□□□ -1.28
VPS52-216ENST00000471309 ADARB2-AS1A8MUL3 147 aa7.07□□□□□ -1.28
VPS52-216ENST00000471309 ZNF705GA8MUZ8 300 aaPredicted RBP7.07□□□□□ -1.28
VPS52-216ENST00000471309 K7EQG2 157 aa7.07□□□□□ -1.28
VPS52-216ENST00000471309 CCL24O00175 119 aa7.07□□□□□ -1.28
VPS52-216ENST00000471309 P01737 135 aa7.07□□□□□ -1.28
VPS52-216ENST00000471309 TYMSP04818 313 aa7.07□□□□□ -1.28
VPS52-216ENST00000471309 CSN3P07498 182 aa7.07□□□□□ -1.28
VPS52-216ENST00000471309 ID1P41134 155 aa7.07□□□□□ -1.28
VPS52-216ENST00000471309 ZNF138P52744 262 aa7.07□□□□□ -1.28
VPS52-216ENST00000471309 TMEM78Q5T7P6 136 aa7.07□□□□□ -1.28
VPS52-216ENST00000471309 HIST2H2BDQ6DRA6 164 aa7.07□□□□□ -1.28
VPS52-216ENST00000471309 LINC00322Q6ZN03 302 aaPredicted RBP7.07□□□□□ -1.28
VPS52-216ENST00000471309 OR4B1Q8NGF8 309 aa7.07□□□□□ -1.28
VPS52-216ENST00000471309 Q8TAT8 98 aa7.07□□□□□ -1.28
VPS52-216ENST00000471309 DUX3Q96PT4 197 aa7.07□□□□□ -1.28
VPS52-216ENST00000471309 LENEPQ9Y5L5 61 aa7.07□□□□□ -1.28
VPS52-216ENST00000471309 IGKV3-7A0A075B6H7 116 aa7.06□□□□□ -1.28
VPS52-216ENST00000471309 PRB4P10163 310 aaPredicted RBP7.06□□□□□ -1.28
VPS52-216ENST00000471309 FAM3BP58499 235 aaPredicted RBP7.06□□□□□ -1.28
VPS52-216ENST00000471309 ERCC8Q13216 396 aa7.06□□□□□ -1.28
VPS52-216ENST00000471309 NDUFA11Q86Y39 141 aa7.06□□□□□ -1.28
VPS52-216ENST00000471309 OR10J6PQ8NGY7 276 aa7.06□□□□□ -1.28
VPS52-216ENST00000471309 TSKUQ8WUA8 353 aa7.06□□□□□ -1.28
VPS52-216ENST00000471309 DAZAP1Q96EP5 407 aaKnown RBP7.06□□□□□ -1.28
VPS52-216ENST00000471309 C8orf49Q96NF6 230 aa7.06□□□□□ -1.28
VPS52-216ENST00000471309 GPR61Q9BZJ8 451 aa7.06□□□□□ -1.28
VPS52-216ENST00000471309 AGPAT4-IT1Q9H0P7 198 aa7.06□□□□□ -1.28
VPS52-216ENST00000471309 SRD5A3Q9H8P0 318 aa7.06□□□□□ -1.28
VPS52-216ENST00000471309 SIGLEC8Q9NYZ4 499 aa7.06□□□□□ -1.28
VPS52-216ENST00000471309 FAM231BA6NCW3 169 aa7.05□□□□□ -1.28
VPS52-216ENST00000471309 CA1P00915 261 aaPredicted RBP7.05□□□□□ -1.28
VPS52-216ENST00000471309 RPS10P46783 165 aaKnown RBP7.05□□□□□ -1.28
VPS52-216ENST00000471309 CRIP1P50238 77 aa7.05□□□□□ -1.28
VPS52-216ENST00000471309 KRTAP10-3P60369 221 aa7.05□□□□□ -1.28
VPS52-216ENST00000471309 SNRPD3P62318 126 aaKnown RBP7.05□□□□□ -1.28
VPS52-216ENST00000471309 PAFAH1B2P68402 229 aa7.05□□□□□ -1.28
VPS52-216ENST00000471309 SRSF2Q01130 221 aaKnown RBP7.05□□□□□ -1.28
VPS52-216ENST00000471309 SMUG1Q53HV7 270 aa7.05□□□□□ -1.28
VPS52-216ENST00000471309 C4orf48Q5BLP8 95 aa7.05□□□□□ -1.28
VPS52-216ENST00000471309 FAM162BQ5T6X4 162 aa7.05□□□□□ -1.28
VPS52-216ENST00000471309 OR8A1Q8NGG7 326 aa7.05□□□□□ -1.28
VPS52-216ENST00000471309 DYNLRB2Q8TF09 96 aa7.05□□□□□ -1.28
VPS52-216ENST00000471309 ASCL2Q99929 193 aa7.05□□□□□ -1.28
VPS52-216ENST00000471309 GFRA4Q9GZZ7 299 aa7.05□□□□□ -1.28
VPS52-216ENST00000471309 NAT8BQ9UHF3 227 aa7.05□□□□□ -1.28
VPS52-216ENST00000471309 SELENOKQ9Y6D0 94 aa7.05□□□□□ -1.28
VPS52-216ENST00000471309 NIPBLQ6KC79 2804 aaeCLIP7.04□□□□□ -1.28
VPS52-216ENST00000471309 TRBV7-9A0A0J9YWB2 115 aa7.04□□□□□ -1.28
VPS52-216ENST00000471309 IZUMO1RA6ND01 250 aa7.04□□□□□ -1.28
VPS52-216ENST00000471309 A8MWL6 223 aa7.04□□□□□ -1.28
VPS52-216ENST00000471309 C1orf196B1AJZ1 125 aa7.04□□□□□ -1.28
VPS52-216ENST00000471309 SH2D1AO60880 128 aa7.04□□□□□ -1.28
VPS52-216ENST00000471309 TCL1AP56279 114 aa7.04□□□□□ -1.28
VPS52-216ENST00000471309 RAB5BP61020 215 aa7.04□□□□□ -1.28
VPS52-216ENST00000471309 RPL19P84098 196 aaKnown RBP7.04□□□□□ -1.28
VPS52-216ENST00000471309 TMEM61Q8N0U2 210 aa7.04□□□□□ -1.28
VPS52-216ENST00000471309 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.04□□□□□ -1.28
VPS52-216ENST00000471309 LINC00477Q96M19 166 aa7.04□□□□□ -1.28
VPS52-216ENST00000471309 NEU1Q99519 415 aa7.04□□□□□ -1.28
VPS52-216ENST00000471309 NSD1Q96L73 2696 aaPredicted RBP7.04□□□□□ -1.28
VPS52-216ENST00000471309 FN1P02751 2386 aaKnown RBP7.03□□□□□ -1.28
VPS52-216ENST00000471309 TRAV25A0A0B4J276 109 aa7.03□□□□□ -1.28
VPS52-216ENST00000471309 ZNF688P0C7X2 276 aa7.03□□□□□ -1.28
VPS52-216ENST00000471309 TFPI2P48307 235 aa7.03□□□□□ -1.28
VPS52-216ENST00000471309 HIST1H1AQ02539 215 aaPredicted RBP7.03□□□□□ -1.28
VPS52-216ENST00000471309 DEFB114Q30KQ6 69 aa7.03□□□□□ -1.28
VPS52-216ENST00000471309 COX19Q49B96 90 aa7.03□□□□□ -1.28
VPS52-216ENST00000471309 PSMG4Q5JS54 123 aa7.03□□□□□ -1.28
VPS52-216ENST00000471309 RBPMS2Q6ZRY4 209 aaKnown RBP7.03□□□□□ -1.28
VPS52-216ENST00000471309 WFDC3Q8IUB2 231 aa7.03□□□□□ -1.28
VPS52-216ENST00000471309 OR2D3Q8NGH3 330 aa7.03□□□□□ -1.28
VPS52-216ENST00000471309 FAM19A4Q96LR4 140 aa7.03□□□□□ -1.28
VPS52-216ENST00000471309 SPAG8Q99932 426 aaPredicted RBP7.03□□□□□ -1.28
VPS52-216ENST00000471309 CUBNO60494 3623 aa7.02□□□□□ -1.29
VPS52-216ENST00000471309 A0A0J9YX75 114 aa7.02□□□□□ -1.29
VPS52-216ENST00000471309 OR4C46A6NHA9 309 aa7.02□□□□□ -1.29
VPS52-216ENST00000471309 HIGD1CA8MV81 97 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms