RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 RAB5AP20339 215 aa8.63□□□□□ -1.03
VPS52-213ENST00000461743 CNN1P51911 297 aaKnown RBP8.63□□□□□ -1.03
VPS52-213ENST00000461743 SERF2P84101 59 aa8.63□□□□□ -1.03
VPS52-213ENST00000461743 AMTNQ6UX39 209 aa8.63□□□□□ -1.03
VPS52-213ENST00000461743 MIR17HGQ75NE6 70 aa8.63□□□□□ -1.03
VPS52-213ENST00000461743 OR8A1Q8NGG7 326 aa8.63□□□□□ -1.03
VPS52-213ENST00000461743 RPUSD4Q96CM3 377 aaKnown RBP8.63□□□□□ -1.03
VPS52-213ENST00000461743 NEU1Q99519 415 aa8.63□□□□□ -1.03
VPS52-213ENST00000461743 ZNF586Q9NXT0 402 aa8.63□□□□□ -1.03
VPS52-213ENST00000461743 DEFB1P60022 68 aa8.62□□□□□ -1.03
VPS52-213ENST00000461743 CASC10Q5T4H9 136 aa8.62□□□□□ -1.03
VPS52-213ENST00000461743 ZNF705AQ6ZN79 300 aaPredicted RBP8.62□□□□□ -1.03
VPS52-213ENST00000461743 Q8NAQ8 132 aa8.62□□□□□ -1.03
VPS52-213ENST00000461743 LYPD6BQ8NI32 183 aa8.62□□□□□ -1.03
VPS52-213ENST00000461743 GNPNAT1Q96EK6 184 aaPredicted RBP8.62□□□□□ -1.03
VPS52-213ENST00000461743 ODF3Q96PU9 254 aa8.62□□□□□ -1.03
VPS52-213ENST00000461743 PAXXQ9BUH6 204 aa8.62□□□□□ -1.03
VPS52-213ENST00000461743 AAMDCQ9H7C9 122 aa8.62□□□□□ -1.03
VPS52-213ENST00000461743 XCL2Q9UBD3 114 aa8.62□□□□□ -1.03
VPS52-213ENST00000461743 SMIM9A6NGZ8 99 aa8.61□□□□□ -1.03
VPS52-213ENST00000461743 ZNF705FA8MVS1 300 aaPredicted RBP8.61□□□□□ -1.03
VPS52-213ENST00000461743 OR7C2O60412 319 aa8.61□□□□□ -1.03
VPS52-213ENST00000461743 JTBO76095 146 aa8.61□□□□□ -1.03
VPS52-213ENST00000461743 INSP01308 110 aa8.61□□□□□ -1.03
VPS52-213ENST00000461743 IGKV3-20P01619 116 aa8.61□□□□□ -1.03
VPS52-213ENST00000461743 ZNF705DP0CH99 300 aaPredicted RBP8.61□□□□□ -1.03
VPS52-213ENST00000461743 ZNF705BP0CI00 300 aaPredicted RBP8.61□□□□□ -1.03
VPS52-213ENST00000461743 PYYP10082 97 aa8.61□□□□□ -1.03
VPS52-213ENST00000461743 ATP6V0CP27449 155 aa8.61□□□□□ -1.03
VPS52-213ENST00000461743 UBE2L3P68036 154 aaKnown RBP8.61□□□□□ -1.03
VPS52-213ENST00000461743 HIST1H1AQ02539 215 aaPredicted RBP8.61□□□□□ -1.03
VPS52-213ENST00000461743 IGFL4Q6B9Z1 124 aa8.61□□□□□ -1.03
VPS52-213ENST00000461743 PQLC2Q6ZP29 291 aa8.61□□□□□ -1.03
VPS52-213ENST00000461743 LYPD1Q8N2G4 141 aa8.61□□□□□ -1.03
VPS52-213ENST00000461743 HSD17B11Q8NBQ5 300 aa8.61□□□□□ -1.03
VPS52-213ENST00000461743 OR10J6PQ8NGY7 276 aa8.61□□□□□ -1.03
VPS52-213ENST00000461743 IGF2BP2-AS1Q96M15 143 aa8.61□□□□□ -1.03
VPS52-213ENST00000461743 SLC35B3Q9H1N7 401 aa8.61□□□□□ -1.03
VPS52-213ENST00000461743 RPS10P5Q9NQ39 176 aa8.61□□□□□ -1.03
VPS52-213ENST00000461743 GOLT1BQ9Y3E0 138 aa8.61□□□□□ -1.03
VPS52-213ENST00000461743 X6R8D5 127 aa8.61□□□□□ -1.03
VPS52-213ENST00000461743 KMT2CQ8NEZ4 4911 aaKnown RBP8.61□□□□□ -1.03
VPS52-213ENST00000461743 A0A1W2PPV4 95 aa8.6□□□□□ -1.03
VPS52-213ENST00000461743 TMEM189A5PLL7 270 aa8.6□□□□□ -1.03
VPS52-213ENST00000461743 NDUFS6O75380 124 aaKnown RBP8.6□□□□□ -1.03
VPS52-213ENST00000461743 NDUFB4O95168 129 aa8.6□□□□□ -1.03
VPS52-213ENST00000461743 NBEAP1P0C6P0 100 aa8.6□□□□□ -1.03
VPS52-213ENST00000461743 HLA-DMBP28068 263 aa8.6□□□□□ -1.03
VPS52-213ENST00000461743 FXYD5Q96DB9 178 aa8.6□□□□□ -1.03
VPS52-213ENST00000461743 ALMS1Q8TCU4 4167 aa8.59□□□□□ -1.03
VPS52-213ENST00000461743 IGHV4-28A0A0C4DH34 117 aa8.59□□□□□ -1.03
VPS52-213ENST00000461743 C7orf77A4D0Y5 90 aa8.59□□□□□ -1.03
VPS52-213ENST00000461743 NPIPB6E9PJ23 425 aa8.59□□□□□ -1.03
VPS52-213ENST00000461743 H3BTX0 84 aa8.59□□□□□ -1.03
VPS52-213ENST00000461743 HOXA5P20719 270 aa8.59□□□□□ -1.03
VPS52-213ENST00000461743 TSPOP30536 169 aa8.59□□□□□ -1.03
VPS52-213ENST00000461743 CDKN1BP46527 198 aa8.59□□□□□ -1.03
VPS52-213ENST00000461743 CDC34P49427 236 aaPredicted RBP8.59□□□□□ -1.03
VPS52-213ENST00000461743 RPL7L1Q6DKI1 246 aaKnown RBP8.59□□□□□ -1.03
VPS52-213ENST00000461743 TMEM256Q8N2U0 113 aa8.59□□□□□ -1.03
VPS52-213ENST00000461743 OR10G4Q8NGN3 311 aa8.59□□□□□ -1.03
VPS52-213ENST00000461743 OR10G9Q8NGN4 311 aa8.59□□□□□ -1.03
VPS52-213ENST00000461743 OR10G7Q8NGN6 311 aa8.59□□□□□ -1.03
VPS52-213ENST00000461743 BLNKQ8WV28 456 aa8.59□□□□□ -1.03
VPS52-213ENST00000461743 C20orf144Q9BQM9 153 aa8.59□□□□□ -1.03
VPS52-213ENST00000461743 PPP1R14DQ9NXH3 145 aa8.59□□□□□ -1.03
VPS52-213ENST00000461743 PLECQ15149 4684 aaKnown RBP8.59□□□□□ -1.03
VPS52-213ENST00000461743 TEX48A0A1B0GUV7 120 aa8.58□□□□□ -1.04
VPS52-213ENST00000461743 NUPR2A6NF83 97 aa8.58□□□□□ -1.04
VPS52-213ENST00000461743 S100A2P29034 98 aa8.58□□□□□ -1.04
VPS52-213ENST00000461743 RAB4BP61018 213 aa8.58□□□□□ -1.04
VPS52-213ENST00000461743 SPINK13Q1W4C9 94 aa8.58□□□□□ -1.04
VPS52-213ENST00000461743 ZNF503Q96F45 646 aa8.58□□□□□ -1.04
VPS52-213ENST00000461743 SMDT1Q9H4I9 107 aa8.58□□□□□ -1.04
VPS52-213ENST00000461743 RFNGQ9Y644 331 aa8.58□□□□□ -1.04
VPS52-213ENST00000461743 C9JQL5 133 aa8.57□□□□□ -1.04
VPS52-213ENST00000461743 M0R036 132 aa8.57□□□□□ -1.04
VPS52-213ENST00000461743 CRXO43186 299 aaPredicted RBP8.57□□□□□ -1.04
VPS52-213ENST00000461743 SNRPCP09234 159 aaKnown RBP8.57□□□□□ -1.04
VPS52-213ENST00000461743 OR10J4P0C629 311 aa8.57□□□□□ -1.04
VPS52-213ENST00000461743 STAG3L2P0CL84 134 aa8.57□□□□□ -1.04
VPS52-213ENST00000461743 STAG3L3P0CL85 134 aa8.57□□□□□ -1.04
VPS52-213ENST00000461743 BTF3P20290 206 aaKnown RBP8.57□□□□□ -1.04
VPS52-213ENST00000461743 LEPP41159 167 aa8.57□□□□□ -1.04
VPS52-213ENST00000461743 FXYD7P58549 80 aa8.57□□□□□ -1.04
VPS52-213ENST00000461743 LBHQ53QV2 105 aaPredicted RBP8.57□□□□□ -1.04
VPS52-213ENST00000461743 ARL6IP6Q8N6S5 226 aa8.57□□□□□ -1.04
VPS52-213ENST00000461743 C11orf45Q8TAV5 145 aa8.57□□□□□ -1.04
VPS52-213ENST00000461743 YPEL4Q96NS1 127 aa8.57□□□□□ -1.04
VPS52-213ENST00000461743 TRBV7-9A0A0J9YWB2 115 aa8.56□□□□□ -1.04
VPS52-213ENST00000461743 RBAKDNA6NC62 111 aa8.56□□□□□ -1.04
VPS52-213ENST00000461743 PRAC2D3DTV9 90 aa8.56□□□□□ -1.04
VPS52-213ENST00000461743 M0R2Z0 102 aa8.56□□□□□ -1.04
VPS52-213ENST00000461743 M0R3E3 92 aa8.56□□□□□ -1.04
VPS52-213ENST00000461743 HBE1P02100 147 aa8.56□□□□□ -1.04
VPS52-213ENST00000461743 SLC25A5P05141 298 aaKnown RBP8.56□□□□□ -1.04
VPS52-213ENST00000461743 RBMY1A1P0DJD3 496 aaKnown RBP8.56□□□□□ -1.04
VPS52-213ENST00000461743 RBMY1CP0DJD4 496 aa8.56□□□□□ -1.04
VPS52-213ENST00000461743 CSN1S1P47710 185 aa8.56□□□□□ -1.04
VPS52-213ENST00000461743 ICAM4Q14773 271 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms