RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 IGHV3-11P01762 117 aa10.69□□□□□ -0.7
USP40-208ENST00000450966 CRYGBP07316 175 aa10.69□□□□□ -0.7
USP40-208ENST00000450966 MINOS1Q5TGZ0 78 aa10.69□□□□□ -0.7
USP40-208ENST00000450966 MINOS1-NBL1R4GNA1 71 aa10.69□□□□□ -0.7
USP40-208ENST00000450966 DOCK11Q5JSL3 2073 aa10.69□□□□□ -0.7
USP40-208ENST00000450966 CENPVL3A0A0U1RRI6 287 aa10.69□□□□□ -0.7
USP40-208ENST00000450966 RS1O15537 224 aa10.69□□□□□ -0.7
USP40-208ENST00000450966 SP5Q6BEB4 398 aaPredicted RBP10.69□□□□□ -0.7
USP40-208ENST00000450966 HS3ST6Q96QI5 342 aa10.69□□□□□ -0.7
USP40-208ENST00000450966 PLA2G2EQ9NZK7 142 aa10.69□□□□□ -0.7
USP40-208ENST00000450966 TP53TG1Q9Y2A0 90 aa10.69□□□□□ -0.7
USP40-208ENST00000450966 ZNF318Q5VUA4 2279 aa10.68□□□□□ -0.7
USP40-208ENST00000450966 E9PLD3 99 aa10.68□□□□□ -0.7
USP40-208ENST00000450966 TMEM167AQ8TBQ9 72 aa10.68□□□□□ -0.7
USP40-208ENST00000450966 GTSF1Q8WW33 167 aa10.68□□□□□ -0.7
USP40-208ENST00000450966 TDRD6O60522 2096 aaKnown RBP10.68□□□□□ -0.7
USP40-208ENST00000450966 CCDC179H3BU77 68 aa10.68□□□□□ -0.7
USP40-208ENST00000450966 PDE6HQ13956 83 aa10.68□□□□□ -0.7
USP40-208ENST00000450966 TMEM133Q9H2Q1 129 aa10.68□□□□□ -0.7
USP40-208ENST00000450966 SCN5AQ14524 2016 aa10.68□□□□□ -0.7
USP40-208ENST00000450966 IGHV1-18A0A0C4DH31 117 aa10.68□□□□□ -0.7
USP40-208ENST00000450966 FOXF2Q12947 444 aa10.68□□□□□ -0.7
USP40-208ENST00000450966 TRAV41A0A0B4J266 112 aa10.67□□□□□ -0.7
USP40-208ENST00000450966 K7EMI3 77 aa10.67□□□□□ -0.7
USP40-208ENST00000450966 ZNF876PQ49A33 203 aa10.67□□□□□ -0.7
USP40-208ENST00000450966 FAM186AA6NE01 2351 aa10.67□□□□□ -0.7
USP40-208ENST00000450966 LINC01356Q8N9X3 169 aa10.67□□□□□ -0.7
USP40-208ENST00000450966 TRGV11A0A075B6L2 103 aa10.67□□□□□ -0.7
USP40-208ENST00000450966 CRYGCP07315 174 aa10.67□□□□□ -0.7
USP40-208ENST00000450966 LINC00173Q6ZV60 143 aa10.67□□□□□ -0.7
USP40-208ENST00000450966 ETV2O00321 342 aaPredicted RBP10.66□□□□□ -0.7
USP40-208ENST00000450966 IMUPQ9GZP8 106 aa10.66□□□□□ -0.7
USP40-208ENST00000450966 NDUFA12Q9UI09 145 aa10.66□□□□□ -0.7
USP40-208ENST00000450966 HEATR5BQ9P2D3 2071 aa10.66□□□□□ -0.7
USP40-208ENST00000450966 TNRC6AQ8NDV7 1962 aaKnown RBP10.66□□□□□ -0.7
USP40-208ENST00000450966 PDCD11Q14690 1871 aaKnown RBP10.66□□□□□ -0.7
USP40-208ENST00000450966 ADARB2-AS1A8MUL3 147 aa10.66□□□□□ -0.7
USP40-208ENST00000450966 M0R1W7 72 aa10.66□□□□□ -0.7
USP40-208ENST00000450966 RNF114Q9Y508 228 aa10.66□□□□□ -0.7
USP40-208ENST00000450966 ZSWIM8A7E2V4 1837 aa10.66□□□□□ -0.7
USP40-208ENST00000450966 CCL3L1P16619 93 aa10.66□□□□□ -0.7
USP40-208ENST00000450966 YPEL4Q96NS1 127 aa10.65□□□□□ -0.7
USP40-208ENST00000450966 RNF5Q99942 180 aa10.65□□□□□ -0.7
USP40-208ENST00000450966 TRAV12-1A0A0B4J245 112 aa10.65□□□□□ -0.7
USP40-208ENST00000450966 IGKV3D-7A0A0C4DH55 119 aa10.65□□□□□ -0.7
USP40-208ENST00000450966 DOCK9Q9BZ29 2069 aa10.65□□□□□ -0.7
USP40-208ENST00000450966 IGKV1-27A0A075B6S5 117 aa10.65□□□□□ -0.7
USP40-208ENST00000450966 Q6Q795 121 aa10.65□□□□□ -0.7
USP40-208ENST00000450966 PIFOQ8TCI5 191 aa10.65□□□□□ -0.7
USP40-208ENST00000450966 DSCR8Q96T75 97 aa10.65□□□□□ -0.7
USP40-208ENST00000450966 ICOSQ9Y6W8 199 aa10.65□□□□□ -0.7
USP40-208ENST00000450966 ZNF672Q499Z4 452 aaPredicted RBP10.65□□□□□ -0.71
USP40-208ENST00000450966 DTX2Q86UW9 622 aa10.65□□□□□ -0.71
USP40-208ENST00000450966 C2orf70A6NJV1 201 aa10.64□□□□□ -0.71
USP40-208ENST00000450966 C14orf178Q8N769 122 aaPredicted RBP10.64□□□□□ -0.71
USP40-208ENST00000450966 SMIM2Q9BVW6 85 aa10.64□□□□□ -0.71
USP40-208ENST00000450966 A0A0G2JNJ9 132 aa10.64□□□□□ -0.71
USP40-208ENST00000450966 ZNF474Q6S9Z5 364 aaPredicted RBP10.64□□□□□ -0.71
USP40-208ENST00000450966 Q9UFV3 132 aa10.64□□□□□ -0.71
USP40-208ENST00000450966 TINCRA0A1B0GVN0 87 aa10.64□□□□□ -0.71
USP40-208ENST00000450966 ATP5EP56381 51 aaPredicted RBP10.64□□□□□ -0.71
USP40-208ENST00000450966 SHISA2Q6UWI4 295 aa10.64□□□□□ -0.71
USP40-208ENST00000450966 TP53BP1Q12888 1972 aaPredicted RBP10.64□□□□□ -0.71
USP40-208ENST00000450966 Q8N1Y9 231 aa10.64□□□□□ -0.71
USP40-208ENST00000450966 LMO1P25800 156 aa10.63□□□□□ -0.71
USP40-208ENST00000450966 FGFBP3Q8TAT2 258 aa10.63□□□□□ -0.71
USP40-208ENST00000450966 IGHV3OR16-8A0A075B7F1 116 aa10.63□□□□□ -0.71
USP40-208ENST00000450966 RHODO00212 210 aa10.63□□□□□ -0.71
USP40-208ENST00000450966 ZNF837Q96EG3 531 aaPredicted RBP10.63□□□□□ -0.71
USP40-208ENST00000450966 LINC00694P0DN24 101 aa10.63□□□□□ -0.71
USP40-208ENST00000450966 VSIG2Q96IQ7 327 aa10.63□□□□□ -0.71
USP40-208ENST00000450966 MTCL1Q9Y4B5 1905 aaKnown RBP10.63□□□□□ -0.71
USP40-208ENST00000450966 PINLYPA6NC86 204 aa10.63□□□□□ -0.71
USP40-208ENST00000450966 THADAQ6YHU6 1953 aa10.63□□□□□ -0.71
USP40-208ENST00000450966 TRBV19A0A075B6N1 114 aa10.62□□□□□ -0.71
USP40-208ENST00000450966 IGFBPL1Q8WX77 278 aa10.62□□□□□ -0.71
USP40-208ENST00000450966 CSDC2Q9Y534 153 aaKnown RBP10.62□□□□□ -0.71
USP40-208ENST00000450966 CEP290O15078 2479 aa10.62□□□□□ -0.71
USP40-208ENST00000450966 J3QLI3 93 aa10.62□□□□□ -0.71
USP40-208ENST00000450966 IGHV1-46P01743 117 aa10.62□□□□□ -0.71
USP40-208ENST00000450966 GGNQ86UU5 652 aa10.62□□□□□ -0.71
USP40-208ENST00000450966 TRAV3A0A0B4J244 114 aa10.62□□□□□ -0.71
USP40-208ENST00000450966 IGLC6P0CF74 106 aa10.62□□□□□ -0.71
USP40-208ENST00000450966 LINC00477Q96M19 166 aa10.61□□□□□ -0.71
USP40-208ENST00000450966 TRGV4A0A0C4DH28 118 aa10.61□□□□□ -0.71
USP40-208ENST00000450966 ORMDL1Q9P0S3 153 aa10.61□□□□□ -0.71
USP40-208ENST00000450966 DOCK6Q96HP0 2047 aa10.61□□□□□ -0.71
USP40-208ENST00000450966 COL4A6Q14031 1691 aa10.61□□□□□ -0.71
USP40-208ENST00000450966 NSUN5P1Q3KNT7 163 aa10.61□□□□□ -0.71
USP40-208ENST00000450966 TRPT1Q86TN4 253 aaKnown RBP10.61□□□□□ -0.71
USP40-208ENST00000450966 Q8TAT8 98 aa10.61□□□□□ -0.71
USP40-208ENST00000450966 LTAP01374 205 aa10.6□□□□□ -0.71
USP40-208ENST00000450966 TANC1Q9C0D5 1861 aa10.6□□□□□ -0.71
USP40-208ENST00000450966 LINC00473A8K010 186 aa10.6□□□□□ -0.71
USP40-208ENST00000450966 RNF144BQ7Z419 303 aa10.6□□□□□ -0.71
USP40-208ENST00000450966 TM2D2Q9BX73 214 aa10.6□□□□□ -0.71
USP40-208ENST00000450966 Q0VFX4 171 aa10.6□□□□□ -0.71
USP40-208ENST00000450966 ZCCHC24Q8N2G6 241 aaKnown RBP10.6□□□□□ -0.71
USP40-208ENST00000450966 TRAV25A0A0B4J276 109 aa10.6□□□□□ -0.71
USP40-208ENST00000450966 CRLF1O75462 422 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms