RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 HIST1H2BAQ96A08 127 aa9.01□□□□□ -0.97
PTPRF-208ENST00000437607 C11orf52Q96A22 123 aa9.01□□□□□ -0.97
PTPRF-208ENST00000437607 RPUSD4Q96CM3 377 aaKnown RBP9.01□□□□□ -0.97
PTPRF-208ENST00000437607 LINC00052Q96N35 136 aa9.01□□□□□ -0.97
PTPRF-208ENST00000437607 TUBA4BQ9H853 241 aa9.01□□□□□ -0.97
PTPRF-208ENST00000437607 TRAV8-2A0A0B4J237 113 aa9□□□□□ -0.97
PTPRF-208ENST00000437607 SRP19P09132 144 aaKnown RBP9□□□□□ -0.97
PTPRF-208ENST00000437607 SFTA3P0C7M3 94 aa9□□□□□ -0.97
PTPRF-208ENST00000437607 HLA-DMBP28068 263 aa9□□□□□ -0.97
PTPRF-208ENST00000437607 PSG3Q16557 428 aa9□□□□□ -0.97
PTPRF-208ENST00000437607 PSMG4Q5JS54 123 aa9□□□□□ -0.97
PTPRF-208ENST00000437607 IGFL4Q6B9Z1 124 aa9□□□□□ -0.97
PTPRF-208ENST00000437607 GOLT1AQ6ZVE7 132 aa9□□□□□ -0.97
PTPRF-208ENST00000437607 GTSCR1Q86UQ5 136 aa9□□□□□ -0.97
PTPRF-208ENST00000437607 CCDC28AQ8IWP9 274 aa9□□□□□ -0.97
PTPRF-208ENST00000437607 SLC35B3Q9H1N7 401 aa9□□□□□ -0.97
PTPRF-208ENST00000437607 EPDR1Q9UM22 224 aa9□□□□□ -0.97
PTPRF-208ENST00000437607 RBMY1BA6NDE4 496 aaKnown RBP8.99□□□□□ -0.97
PTPRF-208ENST00000437607 RBMY1EA6NEQ0 496 aaKnown RBP8.99□□□□□ -0.97
PTPRF-208ENST00000437607 TCRAP04437 139 aa8.99□□□□□ -0.97
PTPRF-208ENST00000437607 RBMY1DP0C7P1 496 aaKnown RBP8.99□□□□□ -0.97
PTPRF-208ENST00000437607 UBE2G1P62253 170 aa8.99□□□□□ -0.97
PTPRF-208ENST00000437607 ZNF674Q2M3X9 581 aa8.99□□□□□ -0.97
PTPRF-208ENST00000437607 SLC7A5P1Q8MH63 180 aa8.99□□□□□ -0.97
PTPRF-208ENST00000437607 ARL6IP6Q8N6S5 226 aa8.99□□□□□ -0.97
PTPRF-208ENST00000437607 WFDC10AQ9H1F0 79 aa8.99□□□□□ -0.97
PTPRF-208ENST00000437607 IGKV2-40A0A087WW87 121 aaPredicted RBP8.98□□□□□ -0.97
PTPRF-208ENST00000437607 DIRC3C9JPN6 131 aa8.98□□□□□ -0.97
PTPRF-208ENST00000437607 IGKV2D-40P01614 121 aaPredicted RBP8.98□□□□□ -0.97
PTPRF-208ENST00000437607 CD7P09564 240 aa8.98□□□□□ -0.97
PTPRF-208ENST00000437607 SOHLH1Q5JUK2 328 aa8.98□□□□□ -0.97
PTPRF-208ENST00000437607 FAM24BQ8N5W8 94 aa8.98□□□□□ -0.97
PTPRF-208ENST00000437607 DEFB125Q8N687 156 aa8.98□□□□□ -0.97
PTPRF-208ENST00000437607 OR10J6PQ8NGY7 276 aa8.98□□□□□ -0.97
PTPRF-208ENST00000437607 C2CD4CQ8TF44 421 aa8.98□□□□□ -0.97
PTPRF-208ENST00000437607 FMC1Q96HJ9 113 aa8.98□□□□□ -0.97
PTPRF-208ENST00000437607 C20orf173Q96LM9 149 aa8.98□□□□□ -0.97
PTPRF-208ENST00000437607 SMIM7Q9BQ49 75 aa8.98□□□□□ -0.97
PTPRF-208ENST00000437607 PARLQ9H300 379 aa8.98□□□□□ -0.97
PTPRF-208ENST00000437607 HERC2O95714 4834 aa8.97□□□□□ -0.97
PTPRF-208ENST00000437607 ZNF705FA8MVS1 300 aaPredicted RBP8.97□□□□□ -0.97
PTPRF-208ENST00000437607 C9JQL5 133 aa8.97□□□□□ -0.97
PTPRF-208ENST00000437607 DEFB131AP59861 70 aa8.97□□□□□ -0.97
PTPRF-208ENST00000437607 Q86TA4 180 aa8.97□□□□□ -0.97
PTPRF-208ENST00000437607 TMEM75Q8N9X5 138 aa8.97□□□□□ -0.97
PTPRF-208ENST00000437607 KRTAP17-1Q9BYP8 105 aa8.97□□□□□ -0.97
PTPRF-208ENST00000437607 MAP6D1Q9H9H5 199 aa8.97□□□□□ -0.97
PTPRF-208ENST00000437607 TMEM218A2RU14 115 aa8.96□□□□□ -0.98
PTPRF-208ENST00000437607 RBAKDNA6NC62 111 aa8.96□□□□□ -0.98
PTPRF-208ENST00000437607 FBLL1A6NHQ2 334 aaKnown RBP8.96□□□□□ -0.98
PTPRF-208ENST00000437607 ZNF727A8MUV8 499 aa8.96□□□□□ -0.98
PTPRF-208ENST00000437607 OR11H12B2RN74 326 aa8.96□□□□□ -0.98
PTPRF-208ENST00000437607 F8W036 122 aa8.96□□□□□ -0.98
PTPRF-208ENST00000437607 S100A9P06702 114 aaKnown RBP8.96□□□□□ -0.98
PTPRF-208ENST00000437607 RPL35P42766 123 aaKnown RBP8.96□□□□□ -0.98
PTPRF-208ENST00000437607 CMC4P56277 68 aaPredicted RBP8.96□□□□□ -0.98
PTPRF-208ENST00000437607 HIST1H1AQ02539 215 aaPredicted RBP8.96□□□□□ -0.98
PTPRF-208ENST00000437607 TMEM78Q5T7P6 136 aa8.96□□□□□ -0.98
PTPRF-208ENST00000437607 EBLN2Q6P2I7 272 aa8.96□□□□□ -0.98
PTPRF-208ENST00000437607 NDFIP1Q9BT67 221 aa8.96□□□□□ -0.98
PTPRF-208ENST00000437607 DERL1Q9BUN8 251 aa8.96□□□□□ -0.98
PTPRF-208ENST00000437607 TRAV34A0A0B4J273 112 aa8.95□□□□□ -0.98
PTPRF-208ENST00000437607 KRBOX1C9JBD0 128 aa8.95□□□□□ -0.98
PTPRF-208ENST00000437607 PRAC2D3DTV9 90 aa8.95□□□□□ -0.98
PTPRF-208ENST00000437607 PRB4P10163 310 aaPredicted RBP8.95□□□□□ -0.98
PTPRF-208ENST00000437607 GNG4P50150 75 aa8.95□□□□□ -0.98
PTPRF-208ENST00000437607 FLI1Q01543 452 aaPredicted RBP8.95□□□□□ -0.98
PTPRF-208ENST00000437607 TMEM183BQ1AE95 376 aa8.95□□□□□ -0.98
PTPRF-208ENST00000437607 ODF3L2Q3SX64 289 aa8.95□□□□□ -0.98
PTPRF-208ENST00000437607 FAM74A3Q4VXF1 159 aa8.95□□□□□ -0.98
PTPRF-208ENST00000437607 CENPWQ5EE01 88 aa8.95□□□□□ -0.98
PTPRF-208ENST00000437607 FOXI2Q6ZQN5 318 aa8.95□□□□□ -0.98
PTPRF-208ENST00000437607 OR8A1Q8NGG7 326 aa8.95□□□□□ -0.98
PTPRF-208ENST00000437607 IL17DQ8TAD2 202 aa8.95□□□□□ -0.98
PTPRF-208ENST00000437607 NIPSNAP3BQ9BS92 247 aa8.95□□□□□ -0.98
PTPRF-208ENST00000437607 SRD5A3Q9H8P0 318 aa8.95□□□□□ -0.98
PTPRF-208ENST00000437607 TRAV8-1A0A0A6YYK1 113 aa8.94□□□□□ -0.98
PTPRF-208ENST00000437607 C9JCJ5 164 aa8.94□□□□□ -0.98
PTPRF-208ENST00000437607 NPIPB6E9PJ23 425 aa8.94□□□□□ -0.98
PTPRF-208ENST00000437607 ATP6V1G1O75348 118 aa8.94□□□□□ -0.98
PTPRF-208ENST00000437607 DUSP14O95147 198 aaKnown RBP8.94□□□□□ -0.98
PTPRF-208ENST00000437607 TAS2R60P59551 318 aa8.94□□□□□ -0.98
PTPRF-208ENST00000437607 PRNTQ86SH4 94 aa8.94□□□□□ -0.98
PTPRF-208ENST00000437607 Q8TAT8 98 aa8.94□□□□□ -0.98
PTPRF-208ENST00000437607 SEC11CQ9BY50 192 aa8.94□□□□□ -0.98
PTPRF-208ENST00000437607 A0A0J9YX75 114 aa8.93□□□□□ -0.98
PTPRF-208ENST00000437607 F6UB75 175 aa8.93□□□□□ -0.98
PTPRF-208ENST00000437607 ADCYAP1P18509 176 aa8.93□□□□□ -0.98
PTPRF-208ENST00000437607 LINC00476Q8WZB0 136 aa8.93□□□□□ -0.98
PTPRF-208ENST00000437607 SGK494Q96LW2 274 aa8.93□□□□□ -0.98
PTPRF-208ENST00000437607 IGF2BP2-AS1Q96M15 143 aa8.93□□□□□ -0.98
PTPRF-208ENST00000437607 LINC00479Q96M42 142 aa8.93□□□□□ -0.98
PTPRF-208ENST00000437607 SAV1Q9H4B6 383 aaPredicted RBP8.93□□□□□ -0.98
PTPRF-208ENST00000437607 PPP1R14DQ9NXH3 145 aa8.93□□□□□ -0.98
PTPRF-208ENST00000437607 NAT8Q9UHE5 227 aa8.93□□□□□ -0.98
PTPRF-208ENST00000437607 PSG8Q9UQ74 426 aa8.93□□□□□ -0.98
PTPRF-208ENST00000437607 DNAH17Q9UFH2 4485 aa8.92□□□□□ -0.98
PTPRF-208ENST00000437607 TRBV6-1A0A0K0K1D8 114 aa8.92□□□□□ -0.98
PTPRF-208ENST00000437607 KNCNA6PVL3 124 aa8.92□□□□□ -0.98
PTPRF-208ENST00000437607 LTAP01374 205 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms