RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 SPINK8P0C7L1 97 aa6.82□□□□□ -1.32
USP40-203ENST00000427112 CKS2P33552 79 aa6.82□□□□□ -1.32
USP40-203ENST00000427112 PSMB2P49721 201 aa6.82□□□□□ -1.32
USP40-203ENST00000427112 MRGPRG-AS1Q2M3A8 158 aa6.82□□□□□ -1.32
USP40-203ENST00000427112 CR1LQ2VPA4 569 aa6.82□□□□□ -1.32
USP40-203ENST00000427112 TMEM219Q86XT9 240 aa6.82□□□□□ -1.32
USP40-203ENST00000427112 NGBQ9NPG2 151 aa6.82□□□□□ -1.32
USP40-203ENST00000427112 ZNF785A8K8V0 405 aa6.82□□□□□ -1.32
USP40-203ENST00000427112 FSTL3O95633 263 aa6.82□□□□□ -1.32
USP40-203ENST00000427112 RPL7P18124 248 aaKnown RBP6.82□□□□□ -1.32
USP40-203ENST00000427112 HSD52Q0P140 79 aa6.82□□□□□ -1.32
USP40-203ENST00000427112 C8orf46Q8TAG6 207 aa6.82□□□□□ -1.32
USP40-203ENST00000427112 RNF125Q96EQ8 232 aa6.82□□□□□ -1.32
USP40-203ENST00000427112 MTORP42345 2549 aa6.82□□□□□ -1.32
USP40-203ENST00000427112 PRAC2D3DTV9 90 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 FNDC10F2Z333 226 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 CHTOPQ9Y3Y2 248 aaKnown RBP6.81□□□□□ -1.32
USP40-203ENST00000427112 LY96Q9Y6Y9 160 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 EPG5Q9HCE0 2579 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 A0A0G2JLM5 398 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 TMEM189A5PLL7 270 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 BUB1B-PAK6H3BSN5 160 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 GATA4P43694 442 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 ZNF80P51504 273 aaPredicted RBP6.81□□□□□ -1.32
USP40-203ENST00000427112 SRSF9Q13242 221 aaKnown RBP eCLIP6.81□□□□□ -1.32
USP40-203ENST00000427112 POU2AF1Q16633 256 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 BVES-AS1Q5T3Y7 98 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 SCGB1D4Q6XE38 83 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 DYNAPQ8N1N2 210 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 OR4A5Q8NH83 315 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 PRELID3AQ96N28 172 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 BEX4Q9NWD9 120 aaPredicted RBP6.81□□□□□ -1.32
USP40-203ENST00000427112 TRAV9-1A0A075B6T8 112 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 LINC01548A6NM66 108 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 G3V318 75 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 TAX1BP3O14907 124 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 TMEM155Q4W5P6 130 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 Q6ZS92 163 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 C7orf69Q9H7B7 122 aa6.81□□□□□ -1.32
USP40-203ENST00000427112 TEX22C9J3V5 150 aa6.8□□□□□ -1.32
USP40-203ENST00000427112 TOMM40O96008 361 aa6.8□□□□□ -1.32
USP40-203ENST00000427112 NPYP01303 97 aa6.8□□□□□ -1.32
USP40-203ENST00000427112 RHOGP84095 191 aa6.8□□□□□ -1.32
USP40-203ENST00000427112 TRBV20-1A0A075B6N2 111 aa6.8□□□□□ -1.32
USP40-203ENST00000427112 A1L4Q6 167 aa6.8□□□□□ -1.32
USP40-203ENST00000427112 CD3EP07766 207 aa6.8□□□□□ -1.32
USP40-203ENST00000427112 PSG3Q16557 428 aa6.8□□□□□ -1.32
USP40-203ENST00000427112 ADAMTSL5Q6ZMM2 481 aa6.8□□□□□ -1.32
USP40-203ENST00000427112 GTSCR1Q86UQ5 136 aa6.8□□□□□ -1.32
USP40-203ENST00000427112 A0A1B0GXF2 115 aa6.8□□□□□ -1.32
USP40-203ENST00000427112 SHISA9B4DS77 424 aa6.8□□□□□ -1.32
USP40-203ENST00000427112 SH2D1AO60880 128 aa6.8□□□□□ -1.32
USP40-203ENST00000427112 LTAP01374 205 aa6.8□□□□□ -1.32
USP40-203ENST00000427112 TEX36Q5VZQ5 186 aa6.8□□□□□ -1.32
USP40-203ENST00000427112 HIST2H2BDQ6DRA6 164 aa6.8□□□□□ -1.32
USP40-203ENST00000427112 NEU4Q8WWR8 484 aaPredicted RBP6.8□□□□□ -1.32
USP40-203ENST00000427112 SIGLEC8Q9NYZ4 499 aa6.8□□□□□ -1.32
USP40-203ENST00000427112 FN1P02751 2386 aaKnown RBP6.8□□□□□ -1.32
USP40-203ENST00000427112 IGLV2-11P01706 119 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 SMIM13P0DJ93 91 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 ZNF672Q499Z4 452 aaPredicted RBP6.79□□□□□ -1.32
USP40-203ENST00000427112 TMEM97Q5BJF2 176 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 AMTNQ6UX39 209 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 WIPF2Q8TF74 440 aaPredicted RBP6.79□□□□□ -1.32
USP40-203ENST00000427112 FMC1Q96HJ9 113 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 C19orf24Q9BVV8 132 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 AAMDCQ9H7C9 122 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 TMEM160Q9NX00 188 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 MRPL27Q9P0M9 148 aaKnown RBP6.79□□□□□ -1.32
USP40-203ENST00000427112 RABAC1Q9UI14 185 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 TEX48A0A1B0GUV7 120 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 K7EIM0 57 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 EGR2P11161 476 aaPredicted RBP6.79□□□□□ -1.32
USP40-203ENST00000427112 PRTN3P24158 256 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 NEGR1Q7Z3B1 354 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 TEX29Q8N6K0 151 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 MLST8Q9BVC4 326 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 FBN2P35556 2912 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 IGHV3-11P01762 117 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 ZNF491Q8N8L2 437 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 HIST1H4GQ99525 98 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 SCNM1Q9BWG6 230 aa6.79□□□□□ -1.32
USP40-203ENST00000427112 TRBV19A0A075B6N1 114 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 IGHV2-70DA0A0C4DH43 119 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 IGKV3-20P01619 116 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 LIPFP07098 398 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 CLEC19AQ6UXS0 136 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 SH2D6Q7Z4S9 175 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 ACANP16112 2415 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 C19orf71A6NCJ1 209 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 APOMO95445 188 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 IGF1P05019 195 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 LGALS7P47929 136 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 RIGQ13278 110 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 KIR3DS1Q14943 382 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 SAMD5Q5TGI4 173 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 IGFL2Q6UWQ7 119 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 Q8NA96 180 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 GAGE12HA6NDE8 117 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 MYCNOSP40205 109 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms