RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 SPTA1P02549 2419 aa7.62□□□□□ -1.19
SS18-203ENST00000415083 PRTN3P24158 256 aa7.62□□□□□ -1.19
SS18-203ENST00000415083 EBI3Q14213 229 aa7.62□□□□□ -1.19
SS18-203ENST00000415083 VMO1Q7Z5L0 202 aa7.62□□□□□ -1.19
SS18-203ENST00000415083 RNF182Q8N6D2 247 aa7.62□□□□□ -1.19
SS18-203ENST00000415083 NHLH1Q02575 133 aa7.62□□□□□ -1.19
SS18-203ENST00000415083 Q8N9W7 124 aa7.62□□□□□ -1.19
SS18-203ENST00000415083 PRELID3AQ96N28 172 aa7.62□□□□□ -1.19
SS18-203ENST00000415083 DKK2Q9UBU2 259 aa7.62□□□□□ -1.19
SS18-203ENST00000415083 TMEM189A5PLL7 270 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 LINC01546A6NGU7 62 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 VSTM5A8MXK1 200 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 MFAP4P55083 255 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 HIST1H1AQ02539 215 aaPredicted RBP7.61□□□□□ -1.19
SS18-203ENST00000415083 MEGF9Q9H1U4 602 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 C21orf62Q9NYP8 219 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 RABAC1Q9UI14 185 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 GAGE10A6NGK3 116 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 CD5LO43866 347 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 NBL1P41271 181 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 ADAMTSL5Q6ZMM2 481 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 OR10AG1Q8NH19 301 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 THYN1Q9P016 225 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 H3BUT2 72 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 CACNG7P62955 275 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 HES1Q14469 280 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 TMEM97Q5BJF2 176 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 PCP2Q8IVA1 136 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 ARL6IP6Q8N6S5 226 aa7.61□□□□□ -1.19
SS18-203ENST00000415083 UTP20O75691 2785 aaKnown RBP7.6□□□□□ -1.19
SS18-203ENST00000415083 AKAP9Q99996 3911 aa7.6□□□□□ -1.19
SS18-203ENST00000415083 IGKV2D-26A0A0A0MRZ7 120 aa7.6□□□□□ -1.19
SS18-203ENST00000415083 TRAV8-2A0A0B4J237 113 aa7.6□□□□□ -1.19
SS18-203ENST00000415083 PPIFP30405 207 aaKnown RBP7.6□□□□□ -1.19
SS18-203ENST00000415083 BOD1L2Q8IYS8 172 aa7.6□□□□□ -1.19
SS18-203ENST00000415083 CNFNQ9BYD5 112 aa7.6□□□□□ -1.19
SS18-203ENST00000415083 TTTY13Q9BZ97 58 aa7.6□□□□□ -1.19
SS18-203ENST00000415083 RAB1BQ9H0U4 201 aa7.6□□□□□ -1.19
SS18-203ENST00000415083 IGKV3D-20A0A0C4DH25 116 aa7.6□□□□□ -1.19
SS18-203ENST00000415083 A0A1B0GW15 77 aa7.6□□□□□ -1.19
SS18-203ENST00000415083 M0R1W7 72 aa7.6□□□□□ -1.19
SS18-203ENST00000415083 CCDC140Q96MF4 163 aa7.6□□□□□ -1.19
SS18-203ENST00000415083 SIRPDQ9H106 197 aa7.6□□□□□ -1.19
SS18-203ENST00000415083 IGLV2-18A0A075B6J9 118 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 IGHV3-66A0A0C4DH42 116 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 CCL21O00585 134 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 NMUP48645 174 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 LGALS9BQ3B8N2 356 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 Q6AWC8 147 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 LGALS9CQ6DKI2 356 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 ORMDL3Q8N138 153 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 C18orf15Q96N68 181 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 PEF1Q9UBV8 284 aaKnown RBP7.59□□□□□ -1.19
SS18-203ENST00000415083 NCBP2LA6PVI3 153 aaKnown RBP7.59□□□□□ -1.19
SS18-203ENST00000415083 K7EMI3 77 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 TRGV3P03979 118 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 KLK9Q2XQG4 91 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 IL17RELQ6ZVW7 336 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 ZNF502Q8TBZ5 544 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 KLK9Q9UKQ9 250 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 HHLA3Q9XRX5 114 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 PPBPP02775 128 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 CSN1S1P47710 185 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 UFSP1Q6NVU6 142 aa7.59□□□□□ -1.19
SS18-203ENST00000415083 BUB3O43684 328 aa7.58□□□□□ -1.2
SS18-203ENST00000415083 FOXC1Q12948 553 aa7.58□□□□□ -1.2
SS18-203ENST00000415083 FER1L6-AS1Q8NA97 138 aa7.58□□□□□ -1.2
SS18-203ENST00000415083 AP1S3Q96PC3 154 aa7.58□□□□□ -1.2
SS18-203ENST00000415083 ZMAT4Q9H898 229 aa7.58□□□□□ -1.2
SS18-203ENST00000415083 K7EQM0 130 aa7.58□□□□□ -1.2
SS18-203ENST00000415083 TWIST1Q15672 202 aa7.58□□□□□ -1.2
SS18-203ENST00000415083 AAMDCQ9H7C9 122 aa7.58□□□□□ -1.2
SS18-203ENST00000415083 PTPRZ1P23471 2315 aaPredicted RBP7.58□□□□□ -1.2
SS18-203ENST00000415083 IGHV3OR16-13A0A075B7E8 117 aa7.58□□□□□ -1.2
SS18-203ENST00000415083 IGHV3-74A0A0B4J1X5 117 aa7.58□□□□□ -1.2
SS18-203ENST00000415083 IGHV7-4-1A0A0J9YVY3 117 aa7.58□□□□□ -1.2
SS18-203ENST00000415083 G3V318 75 aa7.58□□□□□ -1.2
SS18-203ENST00000415083 EVI2AP22794 236 aa7.58□□□□□ -1.2
SS18-203ENST00000415083 PRR9Q5T870 116 aa7.58□□□□□ -1.2
SS18-203ENST00000415083 IGF1P05019 195 aa7.57□□□□□ -1.2
SS18-203ENST00000415083 DPF1Q92782 380 aa7.57□□□□□ -1.2
SS18-203ENST00000415083 ATP6V0E1O15342 81 aa7.57□□□□□ -1.2
SS18-203ENST00000415083 KIR3DS1Q14943 382 aa7.57□□□□□ -1.2
SS18-203ENST00000415083 SMIM15Q7Z3B0 74 aa7.57□□□□□ -1.2
SS18-203ENST00000415083 K7ERU9 68 aa7.56□□□□□ -1.2
SS18-203ENST00000415083 HBDP02042 147 aa7.56□□□□□ -1.2
SS18-203ENST00000415083 CT45A10P0DMU9 189 aa7.56□□□□□ -1.2
SS18-203ENST00000415083 C15orf32Q32M92 178 aa7.56□□□□□ -1.2
SS18-203ENST00000415083 IFI27L1Q96BM0 104 aa7.56□□□□□ -1.2
SS18-203ENST00000415083 NPFFR1Q9GZQ6 430 aa7.56□□□□□ -1.2
SS18-203ENST00000415083 AGPAT4-IT1Q9H0P7 198 aa7.56□□□□□ -1.2
SS18-203ENST00000415083 CSTL1Q9H114 145 aa7.56□□□□□ -1.2
SS18-203ENST00000415083 SPTBN1Q01082 2364 aaKnown RBP7.56□□□□□ -1.2
SS18-203ENST00000415083 IGHV3-49A0A0A0MS15 119 aa7.56□□□□□ -1.2
SS18-203ENST00000415083 RPL7P18124 248 aaKnown RBP7.56□□□□□ -1.2
SS18-203ENST00000415083 CKS2P33552 79 aa7.56□□□□□ -1.2
SS18-203ENST00000415083 SRSF2Q01130 221 aaKnown RBP7.56□□□□□ -1.2
SS18-203ENST00000415083 ODF1Q14990 250 aa7.56□□□□□ -1.2
SS18-203ENST00000415083 LINC01559Q495D7 138 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms