RNA–Protein interactions for RNA: ENST00000361311.4

CLSTN1-201, Transcript of calsyntenin 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLSTN1, Length 4,647 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-201ENST00000361311 ZNF503Q96F45 646 aa12.74□□□□□ -0.37
CLSTN1-201ENST00000361311 DPH3P1Q9H4G8 78 aa12.74□□□□□ -0.37
CLSTN1-201ENST00000361311 CACNA1AO00555 2505 aa12.74□□□□□ -0.37
CLSTN1-201ENST00000361311 TRBV20-1A0A075B6N2 111 aa12.74□□□□□ -0.37
CLSTN1-201ENST00000361311 SLC25A16P16260 332 aa12.74□□□□□ -0.37
CLSTN1-201ENST00000361311 GDF5OSQ5U4N7 250 aa12.74□□□□□ -0.37
CLSTN1-201ENST00000361311 LINC01560Q8TB33 94 aa12.74□□□□□ -0.37
CLSTN1-201ENST00000361311 DDB2Q92466 427 aa12.74□□□□□ -0.37
CLSTN1-201ENST00000361311 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.73□□□□□ -0.37
CLSTN1-201ENST00000361311 BUB1B-PAK6H3BSN5 160 aa12.73□□□□□ -0.37
CLSTN1-201ENST00000361311 CD7P09564 240 aa12.73□□□□□ -0.37
CLSTN1-201ENST00000361311 SUMO2P61956 95 aaKnown RBP12.73□□□□□ -0.37
CLSTN1-201ENST00000361311 FAM106AQ4KMX7 169 aa12.73□□□□□ -0.37
CLSTN1-201ENST00000361311 C15orf32Q32M92 178 aa12.73□□□□□ -0.37
CLSTN1-201ENST00000361311 C19orf54Q5BKX5 351 aa12.73□□□□□ -0.37
CLSTN1-201ENST00000361311 FAM57AQ8TBR7 257 aa12.73□□□□□ -0.37
CLSTN1-201ENST00000361311 C17orf77Q96MU5 243 aa12.73□□□□□ -0.37
CLSTN1-201ENST00000361311 KLF12Q9Y4X4 402 aa12.73□□□□□ -0.37
CLSTN1-201ENST00000361311 TRAV12-3A0A0B4J271 114 aa12.73□□□□□ -0.37
CLSTN1-201ENST00000361311 IGLL5B9A064 214 aa12.73□□□□□ -0.37
CLSTN1-201ENST00000361311 GATA4P43694 442 aa12.73□□□□□ -0.37
CLSTN1-201ENST00000361311 DIAPH2-AS1Q14236 149 aa12.73□□□□□ -0.37
CLSTN1-201ENST00000361311 RNF182Q8N6D2 247 aa12.73□□□□□ -0.37
CLSTN1-201ENST00000361311 TTTY13Q9BZ97 58 aa12.73□□□□□ -0.37
CLSTN1-201ENST00000361311 EML5Q05BV3 1969 aa12.72□□□□□ -0.37
CLSTN1-201ENST00000361311 LINC00310P59036 64 aa12.72□□□□□ -0.37
CLSTN1-201ENST00000361311 RRN3P1Q2M238 152 aa12.72□□□□□ -0.37
CLSTN1-201ENST00000361311 C2orf82Q6UX34 121 aa12.72□□□□□ -0.37
CLSTN1-201ENST00000361311 F8VRH5 84 aa12.72□□□□□ -0.37
CLSTN1-201ENST00000361311 IGHG3P01860 377 aa12.72□□□□□ -0.37
CLSTN1-201ENST00000361311 EFNA4P52798 201 aa12.72□□□□□ -0.37
CLSTN1-201ENST00000361311 C5orf64Q2M2E5 130 aa12.72□□□□□ -0.37
CLSTN1-201ENST00000361311 FOXI2Q6ZQN5 318 aa12.72□□□□□ -0.37
CLSTN1-201ENST00000361311 PRADC1Q9BSG0 188 aa12.71□□□□□ -0.37
CLSTN1-201ENST00000361311 TNFRSF18Q9Y5U5 241 aa12.71□□□□□ -0.37
CLSTN1-201ENST00000361311 K7EM74 188 aa12.71□□□□□ -0.37
CLSTN1-201ENST00000361311 ZNF474Q6S9Z5 364 aaPredicted RBP12.71□□□□□ -0.37
CLSTN1-201ENST00000361311 C2orf66Q6UXQ4 117 aa12.71□□□□□ -0.37
CLSTN1-201ENST00000361311 H3BRN7 92 aa12.71□□□□□ -0.38
CLSTN1-201ENST00000361311 A0A1B0GXF2 115 aa12.71□□□□□ -0.38
CLSTN1-201ENST00000361311 ATXN8Q156A1 80 aa12.71□□□□□ -0.38
CLSTN1-201ENST00000361311 DTX2Q86UW9 622 aa12.7□□□□□ -0.38
CLSTN1-201ENST00000361311 GP9P14770 177 aa12.7□□□□□ -0.38
CLSTN1-201ENST00000361311 PROP1O75360 226 aa12.7□□□□□ -0.38
CLSTN1-201ENST00000361311 K7EMI3 77 aa12.69□□□□□ -0.38
CLSTN1-201ENST00000361311 SRSF8Q9BRL6 282 aaKnown RBP12.69□□□□□ -0.38
CLSTN1-201ENST00000361311 TRAV26-2A0A0B4J265 109 aa12.69□□□□□ -0.38
CLSTN1-201ENST00000361311 M0R2P5 195 aa12.69□□□□□ -0.38
CLSTN1-201ENST00000361311 LY6EQ16553 131 aa12.69□□□□□ -0.38
CLSTN1-201ENST00000361311 CD59P13987 128 aa12.69□□□□□ -0.38
CLSTN1-201ENST00000361311 FAM208BQ5VWN6 2430 aa12.69□□□□□ -0.38
CLSTN1-201ENST00000361311 SNRPD3P62318 126 aaKnown RBP12.69□□□□□ -0.38
CLSTN1-201ENST00000361311 SIGLEC15Q6ZMC9 328 aa12.69□□□□□ -0.38
CLSTN1-201ENST00000361311 TNRC6AQ8NDV7 1962 aaKnown RBP12.69□□□□□ -0.38
CLSTN1-201ENST00000361311 IGLV1-44P01699 117 aa12.68□□□□□ -0.38
CLSTN1-201ENST00000361311 IGHV3-11P01762 117 aa12.68□□□□□ -0.38
CLSTN1-201ENST00000361311 NPFFO15130 113 aa12.68□□□□□ -0.38
CLSTN1-201ENST00000361311 MBD3L4A6NDZ8 208 aaPredicted RBP12.68□□□□□ -0.38
CLSTN1-201ENST00000361311 MBD3L3A6NE82 208 aaPredicted RBP12.68□□□□□ -0.38
CLSTN1-201ENST00000361311 MBD3L5A6NJ08 208 aaPredicted RBP12.68□□□□□ -0.38
CLSTN1-201ENST00000361311 OVOL1O14753 267 aa12.68□□□□□ -0.38
CLSTN1-201ENST00000361311 HLA-DRB4P13762 266 aa12.68□□□□□ -0.38
CLSTN1-201ENST00000361311 MBD3L2Q8NHZ7 208 aaPredicted RBP12.68□□□□□ -0.38
CLSTN1-201ENST00000361311 MBD6Q96DN6 1003 aa12.68□□□□□ -0.38
CLSTN1-201ENST00000361311 HLA-DRB4X5D2U9 266 aa12.68□□□□□ -0.38
CLSTN1-201ENST00000361311 C22orf46C9J442 243 aa12.67□□□□□ -0.38
CLSTN1-201ENST00000361311 VCYO14598 125 aa12.67□□□□□ -0.38
CLSTN1-201ENST00000361311 LINC00311Q8N616 119 aa12.67□□□□□ -0.38
CLSTN1-201ENST00000361311 PLEKHB2Q96CS7 222 aa12.67□□□□□ -0.38
CLSTN1-201ENST00000361311 IGHV3OR16-10A0A075B7F0 116 aa12.67□□□□□ -0.38
CLSTN1-201ENST00000361311 A0A087WX48 190 aa12.67□□□□□ -0.38
CLSTN1-201ENST00000361311 EGR2P11161 476 aaPredicted RBP12.67□□□□□ -0.38
CLSTN1-201ENST00000361311 IL17RELQ6ZVW7 336 aa12.67□□□□□ -0.38
CLSTN1-201ENST00000361311 OR11H6Q8NGC7 330 aa12.67□□□□□ -0.38
CLSTN1-201ENST00000361311 NUP210LQ5VU65 1888 aa12.66□□□□□ -0.38
CLSTN1-201ENST00000361311 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.66□□□□□ -0.38
CLSTN1-201ENST00000361311 ZNF491Q8N8L2 437 aa12.66□□□□□ -0.38
CLSTN1-201ENST00000361311 ACACBO00763 2458 aa12.66□□□□□ -0.38
CLSTN1-201ENST00000361311 ZNF688P0C7X2 276 aa12.66□□□□□ -0.38
CLSTN1-201ENST00000361311 CD28P10747 220 aa12.66□□□□□ -0.38
CLSTN1-201ENST00000361311 KLRD1Q13241 179 aa12.66□□□□□ -0.38
CLSTN1-201ENST00000361311 C1QTNF4Q9BXJ3 329 aa12.66□□□□□ -0.38
CLSTN1-201ENST00000361311 YAE1D1Q9NRH1 226 aa12.66□□□□□ -0.38
CLSTN1-201ENST00000361311 HIGD1BQ9P298 99 aa12.66□□□□□ -0.38
CLSTN1-201ENST00000361311 SMIM2Q9BVW6 85 aa12.66□□□□□ -0.38
CLSTN1-201ENST00000361311 C19orf71A6NCJ1 209 aa12.66□□□□□ -0.38
CLSTN1-201ENST00000361311 B5MCH6 92 aa12.66□□□□□ -0.38
CLSTN1-201ENST00000361311 NDPQ00604 133 aa12.66□□□□□ -0.38
CLSTN1-201ENST00000361311 NUP37Q8NFH4 326 aa12.66□□□□□ -0.38
CLSTN1-201ENST00000361311 GATA1P15976 413 aaPredicted RBP12.65□□□□□ -0.38
CLSTN1-201ENST00000361311 NPC2P61916 151 aa12.65□□□□□ -0.38
CLSTN1-201ENST00000361311 PAX8Q06710 450 aa12.65□□□□□ -0.38
CLSTN1-201ENST00000361311 SHISA9B4DS77 424 aa12.65□□□□□ -0.38
CLSTN1-201ENST00000361311 IGKV3D-20A0A0C4DH25 116 aa12.65□□□□□ -0.38
CLSTN1-201ENST00000361311 LINC00322Q6ZN03 302 aaPredicted RBP12.65□□□□□ -0.38
CLSTN1-201ENST00000361311 C9orf139Q6ZV77 190 aa12.65□□□□□ -0.38
CLSTN1-201ENST00000361311 TRAV26-1A0A087WT03 109 aa12.65□□□□□ -0.39
CLSTN1-201ENST00000361311 A0A0U1RRA0 63 aa12.65□□□□□ -0.39
CLSTN1-201ENST00000361311 Q8N976 141 aa12.65□□□□□ -0.39
CLSTN1-201ENST00000361311 MRPL36Q9P0J6 103 aaKnown RBP12.65□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms