RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 RBPMS2Q6ZRY4 209 aaKnown RBP14.04□□□□□ -0.16
CLN3-204ENST00000357857 C15orf54Q8N8G6 183 aa14.04□□□□□ -0.16
CLN3-204ENST00000357857 ASCL2Q99929 193 aa14.04□□□□□ -0.16
CLN3-204ENST00000357857 OSTCQ9NRP0 149 aa14.04□□□□□ -0.16
CLN3-204ENST00000357857 SIGLEC8Q9NYZ4 499 aa14.04□□□□□ -0.16
CLN3-204ENST00000357857 CITED1Q99966 193 aa14.03□□□□□ -0.16
CLN3-204ENST00000357857 RNASE7Q9H1E1 156 aaKnown RBP14.03□□□□□ -0.16
CLN3-204ENST00000357857 PF4P02776 101 aa14.02□□□□□ -0.16
CLN3-204ENST00000357857 SNRPD3P62318 126 aaKnown RBP14.02□□□□□ -0.16
CLN3-204ENST00000357857 KRTAP24-1Q3LI83 254 aa14.02□□□□□ -0.16
CLN3-204ENST00000357857 SAPCD1Q5SSQ6 148 aa14.02□□□□□ -0.16
CLN3-204ENST00000357857 IBA57Q5T440 356 aaKnown RBP14.02□□□□□ -0.16
CLN3-204ENST00000357857 C9orf47Q6ZRZ4 202 aa14.02□□□□□ -0.16
CLN3-204ENST00000357857 TMEM61Q8N0U2 210 aa14.02□□□□□ -0.16
CLN3-204ENST00000357857 Q8TAT8 98 aa14.02□□□□□ -0.16
CLN3-204ENST00000357857 TRAV2A0A0B4J234 112 aa14.01□□□□□ -0.17
CLN3-204ENST00000357857 TMEM78Q5T7P6 136 aa14.01□□□□□ -0.17
CLN3-204ENST00000357857 FAM231DQ6ZW35 169 aa14.01□□□□□ -0.17
CLN3-204ENST00000357857 FAM24BQ8N5W8 94 aa14.01□□□□□ -0.17
CLN3-204ENST00000357857 OR10J6PQ8NGY7 276 aa14.01□□□□□ -0.17
CLN3-204ENST00000357857 C8orf49Q96NF6 230 aa14.01□□□□□ -0.17
CLN3-204ENST00000357857 PRR25Q96S07 402 aa14.01□□□□□ -0.17
CLN3-204ENST00000357857 NDFIP1Q9BT67 221 aa14.01□□□□□ -0.17
CLN3-204ENST00000357857 AGPAT4-IT1Q9H0P7 198 aa14.01□□□□□ -0.17
CLN3-204ENST00000357857 ZNF688P0C7X2 276 aa14.01□□□□□ -0.17
CLN3-204ENST00000357857 CD300EQ496F6 205 aaPredicted RBP14.01□□□□□ -0.17
CLN3-204ENST00000357857 ZC2HC1AQ96GY0 325 aa14.01□□□□□ -0.17
CLN3-204ENST00000357857 ZNF492Q9P255 531 aa14.01□□□□□ -0.17
CLN3-204ENST00000357857 ZNF138P52744 262 aa14□□□□□ -0.17
CLN3-204ENST00000357857 PSMG4Q5JS54 123 aa14□□□□□ -0.17
CLN3-204ENST00000357857 OR8A1Q8NGG7 326 aa14□□□□□ -0.17
CLN3-204ENST00000357857 URGCP-MRPS24S4R325 110 aa14□□□□□ -0.17
CLN3-204ENST00000357857 V9GYV3 84 aa14□□□□□ -0.17
CLN3-204ENST00000357857 TRAV25A0A0B4J276 109 aa13.99□□□□□ -0.17
CLN3-204ENST00000357857 ZNF705DP0CH99 300 aaPredicted RBP13.99□□□□□ -0.17
CLN3-204ENST00000357857 ZNF705BP0CI00 300 aaPredicted RBP13.99□□□□□ -0.17
CLN3-204ENST00000357857 DEFB1P60022 68 aa13.99□□□□□ -0.17
CLN3-204ENST00000357857 LINC00322Q6ZN03 302 aaPredicted RBP13.99□□□□□ -0.17
CLN3-204ENST00000357857 NUDT10Q8NFP7 164 aa13.99□□□□□ -0.17
CLN3-204ENST00000357857 NUDT11Q96G61 164 aa13.99□□□□□ -0.17
CLN3-204ENST00000357857 YPEL4Q96NS1 127 aa13.99□□□□□ -0.17
CLN3-204ENST00000357857 GPR61Q9BZJ8 451 aa13.99□□□□□ -0.17
CLN3-204ENST00000357857 NPIPB6E9PJ23 425 aa13.98□□□□□ -0.17
CLN3-204ENST00000357857 SAP30O75446 220 aa13.98□□□□□ -0.17
CLN3-204ENST00000357857 CT45A10P0DMU9 189 aa13.98□□□□□ -0.17
CLN3-204ENST00000357857 HIST1H1AQ02539 215 aaPredicted RBP13.98□□□□□ -0.17
CLN3-204ENST00000357857 COX8CQ7Z4L0 72 aa13.98□□□□□ -0.17
CLN3-204ENST00000357857 PRIMA1Q86XR5 153 aa13.98□□□□□ -0.17
CLN3-204ENST00000357857 LINC00482Q8N8I6 264 aa13.98□□□□□ -0.17
CLN3-204ENST00000357857 LINC00477Q96M19 166 aa13.98□□□□□ -0.17
CLN3-204ENST00000357857 PPP1R14DQ9NXH3 145 aa13.98□□□□□ -0.17
CLN3-204ENST00000357857 C19orf71A6NCJ1 209 aa13.98□□□□□ -0.17
CLN3-204ENST00000357857 COLCA2A8K830 154 aa13.98□□□□□ -0.17
CLN3-204ENST00000357857 ZNF705GA8MUZ8 300 aaPredicted RBP13.98□□□□□ -0.17
CLN3-204ENST00000357857 F6UB75 175 aa13.98□□□□□ -0.17
CLN3-204ENST00000357857 GATCO43716 136 aaKnown RBP13.98□□□□□ -0.17
CLN3-204ENST00000357857 S100PP25815 95 aa13.98□□□□□ -0.17
CLN3-204ENST00000357857 ELOBQ15370 118 aa13.98□□□□□ -0.17
CLN3-204ENST00000357857 DAZAP1Q96EP5 407 aaKnown RBP13.98□□□□□ -0.17
CLN3-204ENST00000357857 IMMP2LQ96T52 175 aa13.98□□□□□ -0.17
CLN3-204ENST00000357857 PFN1P07737 140 aaKnown RBP13.97□□□□□ -0.17
CLN3-204ENST00000357857 SPAG8Q99932 426 aaPredicted RBP13.97□□□□□ -0.17
CLN3-204ENST00000357857 IL36BQ9NZH7 164 aa13.97□□□□□ -0.17
CLN3-204ENST00000357857 P01737 135 aa13.96□□□□□ -0.17
CLN3-204ENST00000357857 SMUG1Q53HV7 270 aa13.96□□□□□ -0.17
CLN3-204ENST00000357857 KCNIP4Q6PIL6 250 aa13.96□□□□□ -0.17
CLN3-204ENST00000357857 LENEPQ9Y5L5 61 aa13.96□□□□□ -0.17
CLN3-204ENST00000357857 IZUMO1RA6ND01 250 aa13.95□□□□□ -0.18
CLN3-204ENST00000357857 OR4C46A6NHA9 309 aa13.95□□□□□ -0.18
CLN3-204ENST00000357857 CRIP1P50238 77 aa13.95□□□□□ -0.18
CLN3-204ENST00000357857 SORL1Q92673 2214 aa13.95□□□□□ -0.18
CLN3-204ENST00000357857 RPP21Q9H633 154 aaKnown RBP13.95□□□□□ -0.18
CLN3-204ENST00000357857 TGIF2-C20orf24A0A0A6YYL0 155 aa13.94□□□□□ -0.18
CLN3-204ENST00000357857 FAM162BQ5T6X4 162 aa13.94□□□□□ -0.18
CLN3-204ENST00000357857 ATRQ13535 2644 aa13.94□□□□□ -0.18
CLN3-204ENST00000357857 A0A0J9YX75 114 aa13.93□□□□□ -0.18
CLN3-204ENST00000357857 IGLV1-51P01701 117 aa13.93□□□□□ -0.18
CLN3-204ENST00000357857 CXCL1P09341 107 aa13.93□□□□□ -0.18
CLN3-204ENST00000357857 FAM3BP58499 235 aaPredicted RBP13.93□□□□□ -0.18
CLN3-204ENST00000357857 GDF5OSQ5U4N7 250 aa13.93□□□□□ -0.18
CLN3-204ENST00000357857 EBLN2Q6P2I7 272 aa13.93□□□□□ -0.18
CLN3-204ENST00000357857 OR4B1Q8NGF8 309 aa13.93□□□□□ -0.18
CLN3-204ENST00000357857 OR2K2Q8NGT1 345 aa13.93□□□□□ -0.18
CLN3-204ENST00000357857 ZNF256Q9Y2P7 627 aaPredicted RBP13.93□□□□□ -0.18
CLN3-204ENST00000357857 A0A1W2PPQ1 181 aa13.93□□□□□ -0.18
CLN3-204ENST00000357857 SH2D1AO60880 128 aa13.93□□□□□ -0.18
CLN3-204ENST00000357857 CA1P00915 261 aaPredicted RBP13.93□□□□□ -0.18
CLN3-204ENST00000357857 CD33P20138 364 aa13.93□□□□□ -0.18
CLN3-204ENST00000357857 ZNF80P51504 273 aaPredicted RBP13.93□□□□□ -0.18
CLN3-204ENST00000357857 DEFB131AP59861 70 aa13.93□□□□□ -0.18
CLN3-204ENST00000357857 FOXI2Q6ZQN5 318 aa13.93□□□□□ -0.18
CLN3-204ENST00000357857 SAV1Q9H4B6 383 aaPredicted RBP13.93□□□□□ -0.18
CLN3-204ENST00000357857 TRBV24-1A0A075B6N3 115 aa13.92□□□□□ -0.18
CLN3-204ENST00000357857 CT83Q5H943 113 aa13.92□□□□□ -0.18
CLN3-204ENST00000357857 FAM19A4Q96LR4 140 aa13.92□□□□□ -0.18
CLN3-204ENST00000357857 TRBV7-9A0A0J9YWB2 115 aa13.91□□□□□ -0.18
CLN3-204ENST00000357857 SMIM27A0A1W2PRY6 76 aa13.91□□□□□ -0.18
CLN3-204ENST00000357857 OR2D3Q8NGH3 330 aa13.91□□□□□ -0.18
CLN3-204ENST00000357857 PYGO2Q9BRQ0 406 aa13.91□□□□□ -0.18
CLN3-204ENST00000357857 ZNF747Q9BV97 191 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms