RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 VGLL1Q99990 258 aa12.95□□□□□ -0.34
CLN3-202ENST00000355477 CBY3A6NI87 242 aa12.94□□□□□ -0.34
CLN3-202ENST00000355477 OR7C2O60412 319 aa12.94□□□□□ -0.34
CLN3-202ENST00000355477 CD300CQ08708 224 aa12.94□□□□□ -0.34
CLN3-202ENST00000355477 MED28Q9H204 178 aa12.94□□□□□ -0.34
CLN3-202ENST00000355477 HECTD4Q9Y4D8 3996 aa12.94□□□□□ -0.34
CLN3-202ENST00000355477 KLLNB2CW77 178 aa12.93□□□□□ -0.34
CLN3-202ENST00000355477 SLC25A5P05141 298 aaKnown RBP12.93□□□□□ -0.34
CLN3-202ENST00000355477 CCDC28AQ8IWP9 274 aa12.93□□□□□ -0.34
CLN3-202ENST00000355477 DNAH2Q9P225 4427 aa12.92□□□□□ -0.34
CLN3-202ENST00000355477 C7orf71A4D174 169 aa12.92□□□□□ -0.34
CLN3-202ENST00000355477 F5H768 121 aa12.92□□□□□ -0.34
CLN3-202ENST00000355477 ZNF324O75467 553 aaPredicted RBP12.92□□□□□ -0.34
CLN3-202ENST00000355477 ATP5G1P05496 136 aa12.92□□□□□ -0.34
CLN3-202ENST00000355477 RNASE4P34096 147 aaKnown RBP12.92□□□□□ -0.34
CLN3-202ENST00000355477 ATP5G3P48201 142 aa12.92□□□□□ -0.34
CLN3-202ENST00000355477 RANP62826 216 aaKnown RBP12.92□□□□□ -0.34
CLN3-202ENST00000355477 BTN1A1Q13410 526 aa12.92□□□□□ -0.34
CLN3-202ENST00000355477 Q5BKY6 102 aa12.92□□□□□ -0.34
CLN3-202ENST00000355477 PYGO2Q9BRQ0 406 aa12.92□□□□□ -0.34
CLN3-202ENST00000355477 CRISP2P16562 243 aa12.91□□□□□ -0.34
CLN3-202ENST00000355477 UBE2L3P68036 154 aaKnown RBP12.91□□□□□ -0.34
CLN3-202ENST00000355477 Q6ZQT7 251 aa12.91□□□□□ -0.34
CLN3-202ENST00000355477 ZFAND2AQ8N6M9 145 aa12.91□□□□□ -0.34
CLN3-202ENST00000355477 M0R2N4 97 aa12.9□□□□□ -0.34
CLN3-202ENST00000355477 KHDC3LQ587J8 217 aa12.9□□□□□ -0.34
CLN3-202ENST00000355477 TMEM78Q5T7P6 136 aa12.9□□□□□ -0.34
CLN3-202ENST00000355477 PRR9Q5T870 116 aa12.9□□□□□ -0.34
CLN3-202ENST00000355477 UBE2DNLQ8IWF7 75 aa12.9□□□□□ -0.34
CLN3-202ENST00000355477 LINC00612Q8N6U2 182 aa12.9□□□□□ -0.34
CLN3-202ENST00000355477 Q9H3A6 140 aa12.9□□□□□ -0.34
CLN3-202ENST00000355477 ZNF492Q9P255 531 aa12.9□□□□□ -0.34
CLN3-202ENST00000355477 DNAH17Q9UFH2 4485 aa12.89□□□□□ -0.35
CLN3-202ENST00000355477 GPX1P07203 203 aa12.89□□□□□ -0.35
CLN3-202ENST00000355477 TAS2R45P59539 299 aa12.89□□□□□ -0.35
CLN3-202ENST00000355477 RAB2AP61019 212 aa12.89□□□□□ -0.35
CLN3-202ENST00000355477 RNF212Q495C1 297 aa12.89□□□□□ -0.35
CLN3-202ENST00000355477 LYPD1Q8N2G4 141 aa12.89□□□□□ -0.35
CLN3-202ENST00000355477 C15orf53Q8NAA6 179 aa12.89□□□□□ -0.35
CLN3-202ENST00000355477 GAGE12BA1L429 117 aa12.88□□□□□ -0.35
CLN3-202ENST00000355477 SNURFLB1AK76 121 aa12.88□□□□□ -0.35
CLN3-202ENST00000355477 GAGE7O76087 117 aa12.88□□□□□ -0.35
CLN3-202ENST00000355477 NMBP08949 121 aa12.88□□□□□ -0.35
CLN3-202ENST00000355477 GAGE12FP0CL80 117 aa12.88□□□□□ -0.35
CLN3-202ENST00000355477 GAGE12GP0CL81 117 aa12.88□□□□□ -0.35
CLN3-202ENST00000355477 GAGE12IP0CL82 117 aa12.88□□□□□ -0.35
CLN3-202ENST00000355477 M6PRP20645 277 aa12.88□□□□□ -0.35
CLN3-202ENST00000355477 ZNF138P52744 262 aa12.88□□□□□ -0.35
CLN3-202ENST00000355477 ACOT6Q3I5F7 207 aaPredicted RBP12.88□□□□□ -0.35
CLN3-202ENST00000355477 Q8TAT8 98 aa12.88□□□□□ -0.35
CLN3-202ENST00000355477 AQP10Q96PS8 301 aa12.88□□□□□ -0.35
CLN3-202ENST00000355477 FAT2Q9NYQ8 4349 aa12.87□□□□□ -0.35
CLN3-202ENST00000355477 IGLV2-18A0A075B6J9 118 aa12.87□□□□□ -0.35
CLN3-202ENST00000355477 HMGB3O15347 200 aaKnown RBP12.87□□□□□ -0.35
CLN3-202ENST00000355477 CSN1S1P47710 185 aa12.87□□□□□ -0.35
CLN3-202ENST00000355477 DAZ2Q13117 558 aaKnown RBP12.87□□□□□ -0.35
CLN3-202ENST00000355477 C11orf72Q8NBR9 251 aa12.87□□□□□ -0.35
CLN3-202ENST00000355477 LINC00467Q9BRT7 94 aa12.87□□□□□ -0.35
CLN3-202ENST00000355477 GSN-AS1Q9NRJ2 163 aa12.87□□□□□ -0.35
CLN3-202ENST00000355477 MUC4Q99102 2169 aa12.87□□□□□ -0.35
CLN3-202ENST00000355477 RBAKDNA6NC62 111 aa12.86□□□□□ -0.35
CLN3-202ENST00000355477 DIRC3C9JPN6 131 aa12.86□□□□□ -0.35
CLN3-202ENST00000355477 NUDT3O95989 172 aa12.86□□□□□ -0.35
CLN3-202ENST00000355477 GIPP09681 153 aaPredicted RBP12.86□□□□□ -0.35
CLN3-202ENST00000355477 Q6ZTI0 123 aa12.86□□□□□ -0.35
CLN3-202ENST00000355477 EIF4E3Q8N5X7 224 aaKnown RBP12.86□□□□□ -0.35
CLN3-202ENST00000355477 HSD17B11Q8NBQ5 300 aa12.86□□□□□ -0.35
CLN3-202ENST00000355477 OR10G4Q8NGN3 311 aa12.86□□□□□ -0.35
CLN3-202ENST00000355477 OR10G9Q8NGN4 311 aa12.86□□□□□ -0.35
CLN3-202ENST00000355477 OR10G7Q8NGN6 311 aa12.86□□□□□ -0.35
CLN3-202ENST00000355477 HYLS1Q96M11 299 aa12.86□□□□□ -0.35
CLN3-202ENST00000355477 TP53TG3Q9ULZ0 132 aa12.86□□□□□ -0.35
CLN3-202ENST00000355477 A0A1W2PPV4 95 aa12.85□□□□□ -0.35
CLN3-202ENST00000355477 HOXA5P20719 270 aa12.85□□□□□ -0.35
CLN3-202ENST00000355477 OR5I1Q13606 314 aa12.85□□□□□ -0.35
CLN3-202ENST00000355477 LGALS9BQ3B8N2 356 aa12.85□□□□□ -0.35
CLN3-202ENST00000355477 ANXA2RQ3ZCQ2 193 aa12.85□□□□□ -0.35
CLN3-202ENST00000355477 PGPA6NDG6 321 aa12.84□□□□□ -0.35
CLN3-202ENST00000355477 ATP6V0CP27449 155 aa12.84□□□□□ -0.35
CLN3-202ENST00000355477 ZNF266Q14584 549 aa12.84□□□□□ -0.35
CLN3-202ENST00000355477 PQLC2Q6ZP29 291 aa12.84□□□□□ -0.35
CLN3-202ENST00000355477 Q6ZR54 194 aa12.84□□□□□ -0.35
CLN3-202ENST00000355477 ZNF680Q8NEM1 530 aa12.84□□□□□ -0.35
CLN3-202ENST00000355477 OR2G3Q8NGZ4 309 aa12.84□□□□□ -0.35
CLN3-202ENST00000355477 OTORQ9NRC9 128 aa12.84□□□□□ -0.35
CLN3-202ENST00000355477 KLF12Q9Y4X4 402 aa12.84□□□□□ -0.35
CLN3-202ENST00000355477 TRBV7-9A0A0J9YWB2 115 aa12.83□□□□□ -0.36
CLN3-202ENST00000355477 RGS13O14921 159 aa12.83□□□□□ -0.36
CLN3-202ENST00000355477 RTL8CO15255 209 aa12.83□□□□□ -0.36
CLN3-202ENST00000355477 RXFP4Q8TDU9 374 aa12.83□□□□□ -0.36
CLN3-202ENST00000355477 ASB13Q8WXK3 278 aa12.83□□□□□ -0.36
CLN3-202ENST00000355477 ATG101Q9BSB4 218 aa12.83□□□□□ -0.36
CLN3-202ENST00000355477 SH3BGRL3Q9H299 93 aa12.83□□□□□ -0.36
CLN3-202ENST00000355477 TMPRSS5Q9H3S3 457 aa12.83□□□□□ -0.36
CLN3-202ENST00000355477 IGHV1OR15-1A0A075B7D0 117 aa12.82□□□□□ -0.36
CLN3-202ENST00000355477 TRAV26-1A0A087WT03 109 aa12.82□□□□□ -0.36
CLN3-202ENST00000355477 ARL14EPLP0DKL9 152 aa12.82□□□□□ -0.36
CLN3-202ENST00000355477 RGS21Q2M5E4 152 aa12.82□□□□□ -0.36
CLN3-202ENST00000355477 PSMG3Q9BT73 122 aaPredicted RBP12.82□□□□□ -0.36
CLN3-202ENST00000355477 RPH3ALQ9UNE2 315 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 144.3 ms