RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 GSN-AS1Q9NRJ2 163 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 KLK12Q9UKR0 248 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 C9orf170A2RU37 121 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 PMS2P5A8MQ11 134 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 COQ2Q96H96 371 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 ZNF48Q96MX3 618 aaPredicted RBP6.55□□□□□ -1.36
HMGB1-203ENST00000341423 GPHA2Q96T91 129 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 TPSG1Q9NRR2 321 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 M0R2P5 195 aa6.54□□□□□ -1.36
HMGB1-203ENST00000341423 TRGC2P03986 189 aa6.54□□□□□ -1.36
HMGB1-203ENST00000341423 WDR86Q86TI4 376 aa6.54□□□□□ -1.36
HMGB1-203ENST00000341423 IGKV2D-26A0A0A0MRZ7 120 aa6.54□□□□□ -1.36
HMGB1-203ENST00000341423 LINC01549A6NIU2 74 aa6.54□□□□□ -1.36
HMGB1-203ENST00000341423 LINC01590Q5TEZ4 76 aa6.54□□□□□ -1.36
HMGB1-203ENST00000341423 AMTNQ6UX39 209 aa6.54□□□□□ -1.36
HMGB1-203ENST00000341423 LINC00336Q6ZUF6 198 aa6.54□□□□□ -1.36
HMGB1-203ENST00000341423 DIRC3C9JPN6 131 aa6.54□□□□□ -1.36
HMGB1-203ENST00000341423 CTSGP08311 255 aa6.54□□□□□ -1.36
HMGB1-203ENST00000341423 RPS19P39019 145 aaKnown RBP6.54□□□□□ -1.36
HMGB1-203ENST00000341423 GCSAMLQ5JQS6 135 aa6.54□□□□□ -1.36
HMGB1-203ENST00000341423 Q6AWC8 147 aa6.54□□□□□ -1.36
HMGB1-203ENST00000341423 MRPL18Q9H0U6 180 aaKnown RBP6.54□□□□□ -1.36
HMGB1-203ENST00000341423 LRRK1Q38SD2 2015 aa6.54□□□□□ -1.36
HMGB1-203ENST00000341423 SMIM8Q96KF7 97 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 GREB1Q4ZG55 1949 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 NAPSAO96009 420 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 NHLRC3Q5JS37 347 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 TM2D1Q9BX74 207 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 LINC00474Q9P2X8 69 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 CYSLTR1Q9Y271 337 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 ZFP30Q9Y2G7 519 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 VCYO14598 125 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 HLA-DQB1P01920 261 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 HIST3H3Q16695 136 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 MRPL54Q6P161 138 aaKnown RBP6.53□□□□□ -1.36
HMGB1-203ENST00000341423 SCGB3A1Q96QR1 104 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 DERL1Q9BUN8 251 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 NAT8Q9UHE5 227 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 ZNF79Q15937 498 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 REG3GQ6UW15 175 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 BAP18Q8IXM2 172 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 FMC1Q96HJ9 113 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 PSG8Q9UQ74 426 aa6.53□□□□□ -1.36
HMGB1-203ENST00000341423 FAM231BA6NCW3 169 aa6.52□□□□□ -1.37
HMGB1-203ENST00000341423 F2Z2F3 143 aa6.52□□□□□ -1.37
HMGB1-203ENST00000341423 EWSR1Q01844 656 aaKnown RBP eCLIP6.52□□□□□ -1.37
HMGB1-203ENST00000341423 C8orf31Q8N9H6 132 aa6.52□□□□□ -1.37
HMGB1-203ENST00000341423 IGHV7-81A0A0B4J1V7 117 aa6.52□□□□□ -1.37
HMGB1-203ENST00000341423 A0A0U1RQV1 116 aa6.52□□□□□ -1.37
HMGB1-203ENST00000341423 TEX43Q6ZNM6 134 aa6.52□□□□□ -1.37
HMGB1-203ENST00000341423 TMEM191AQ9H0A3 160 aa6.52□□□□□ -1.37
HMGB1-203ENST00000341423 TRBV5-5A0A0J9YX44 114 aa6.52□□□□□ -1.37
HMGB1-203ENST00000341423 CXCL2P19875 107 aa6.52□□□□□ -1.37
HMGB1-203ENST00000341423 UQCC3Q6UW78 93 aa6.52□□□□□ -1.37
HMGB1-203ENST00000341423 LINC00114Q6XXX2 140 aa6.52□□□□□ -1.37
HMGB1-203ENST00000341423 ODF3BA8MYP8 253 aa6.52□□□□□ -1.37
HMGB1-203ENST00000341423 C1orf196B1AJZ1 125 aa6.52□□□□□ -1.37
HMGB1-203ENST00000341423 ARL14EPLP0DKL9 152 aa6.52□□□□□ -1.37
HMGB1-203ENST00000341423 IBA57Q5T440 356 aaKnown RBP6.52□□□□□ -1.37
HMGB1-203ENST00000341423 MDFIQ99750 246 aa6.52□□□□□ -1.37
HMGB1-203ENST00000341423 STAB1Q9NY15 2570 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 LINC00473A8K010 186 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 NXPH4O95158 308 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 DEFB114Q30KQ6 69 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 MAJINQ3KP22 176 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 Q8N9W7 124 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 VPS25Q9BRG1 176 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 USP24Q9UPU5 2620 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 PDCD11Q14690 1871 aaKnown RBP6.51□□□□□ -1.37
HMGB1-203ENST00000341423 IGHV3-38A0A0C4DH36 116 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 ETV2O00321 342 aaPredicted RBP6.51□□□□□ -1.37
HMGB1-203ENST00000341423 PHOX2AO14813 284 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 IGLV2-8P01709 118 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 KPRPQ5T749 579 aaPredicted RBP6.51□□□□□ -1.37
HMGB1-203ENST00000341423 IGHV4-28A0A0C4DH34 117 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 HBBP68871 147 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 C20orf144Q9BQM9 153 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 C7orf77A4D0Y5 90 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 CCL1P22362 96 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 GAGE2EQ4V326 116 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 ZNF833PQ6ZTB9 187 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 ZNF702PQ9H963 129 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 GAGE2DQ9UEU5 116 aa6.51□□□□□ -1.37
HMGB1-203ENST00000341423 EGR2P11161 476 aaPredicted RBP6.5□□□□□ -1.37
HMGB1-203ENST00000341423 NOTCH4Q99466 2003 aa6.5□□□□□ -1.37
HMGB1-203ENST00000341423 IGKV2-40A0A087WW87 121 aaPredicted RBP6.5□□□□□ -1.37
HMGB1-203ENST00000341423 IGKV2D-40P01614 121 aaPredicted RBP6.5□□□□□ -1.37
HMGB1-203ENST00000341423 C9orf153Q5TBE3 101 aa6.5□□□□□ -1.37
HMGB1-203ENST00000341423 TRPT1Q86TN4 253 aaKnown RBP6.5□□□□□ -1.37
HMGB1-203ENST00000341423 POM121L12Q8N7R1 296 aa6.5□□□□□ -1.37
HMGB1-203ENST00000341423 FAM236DA0A1B0GTK5 79 aa6.5□□□□□ -1.37
HMGB1-203ENST00000341423 SCGB1D1O95968 90 aa6.5□□□□□ -1.37
HMGB1-203ENST00000341423 FAM236CP0DP71 79 aa6.5□□□□□ -1.37
HMGB1-203ENST00000341423 FOXL2NBQ6ZUU3 175 aa6.5□□□□□ -1.37
HMGB1-203ENST00000341423 SCRT1Q9BWW7 348 aa6.5□□□□□ -1.37
HMGB1-203ENST00000341423 GBF1Q92538 1859 aa6.5□□□□□ -1.37
HMGB1-203ENST00000341423 TRBV5-3A0A0A0MS03 114 aa6.5□□□□□ -1.37
HMGB1-203ENST00000341423 IGKV1-12A0A0C4DH73 117 aa6.5□□□□□ -1.37
HMGB1-203ENST00000341423 LYPD6BQ8NI32 183 aa6.5□□□□□ -1.37
HMGB1-203ENST00000341423 MRPL53Q96EL3 112 aaKnown RBP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms