RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ZNF493Q6ZR52 646 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 ARHGAP32A7KAX9 2087 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 IGHV3OR16-13A0A075B7E8 117 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 IGHV3-74A0A0B4J1X5 117 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 SPINK8P0C7L1 97 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 PRR20EP86478 221 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 PRR20CP86479 221 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 PRR20DP86480 221 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 PRR20BP86481 221 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 PRR20AP86496 221 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 CD300EQ496F6 205 aaPredicted RBP8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 FXYD5Q96DB9 178 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 RSPO3Q9BXY4 272 aaPredicted RBP8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 RNASE1P07998 156 aaKnown RBP8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 IGHV3-66A0A0C4DH42 116 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 ADARB2-AS1A8MUL3 147 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 ERCC8Q13216 396 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 UTF1Q5T230 341 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 RNF152Q8N8N0 203 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 B4DSR2 109 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 I3L3M4 83 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 CITED1Q99966 193 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 SPG11Q96JI7 2443 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 ARMS2P0C7Q2 107 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 SELLP14151 372 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 GLMPQ8WWB7 406 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 IGHV3-49A0A0A0MS15 119 aa8.27□□□□□ -1.08
CCDC88A-202ENST00000336838 RHOHQ15669 191 aa8.27□□□□□ -1.08
CCDC88A-202ENST00000336838 BVES-AS1Q5T3Y7 98 aa8.27□□□□□ -1.08
CCDC88A-202ENST00000336838 TRAV8-1A0A0A6YYK1 113 aa8.27□□□□□ -1.09
CCDC88A-202ENST00000336838 H3BMM0 161 aa8.27□□□□□ -1.09
CCDC88A-202ENST00000336838 LYPD6Q86Y78 171 aa8.27□□□□□ -1.09
CCDC88A-202ENST00000336838 UBE2WQ96B02 151 aa8.27□□□□□ -1.09
CCDC88A-202ENST00000336838 PRR25Q96S07 402 aa8.27□□□□□ -1.09
CCDC88A-202ENST00000336838 IGKV1-39P01597 117 aa8.27□□□□□ -1.09
CCDC88A-202ENST00000336838 IGKV1D-39P04432 117 aa8.27□□□□□ -1.09
CCDC88A-202ENST00000336838 NCR2O95944 276 aa8.27□□□□□ -1.09
CCDC88A-202ENST00000336838 CEND1Q8N111 149 aa8.27□□□□□ -1.09
CCDC88A-202ENST00000336838 METRNQ9UJH8 293 aa8.27□□□□□ -1.09
CCDC88A-202ENST00000336838 MUC6Q6W4X9 2439 aa8.27□□□□□ -1.09
CCDC88A-202ENST00000336838 Q6ZVH6 145 aa8.27□□□□□ -1.09
CCDC88A-202ENST00000336838 IGHG4P01861 327 aa8.27□□□□□ -1.09
CCDC88A-202ENST00000336838 RNF144BQ7Z419 303 aa8.26□□□□□ -1.09
CCDC88A-202ENST00000336838 C17orf58Q2M2W7 97 aa8.26□□□□□ -1.09
CCDC88A-202ENST00000336838 TMEM95Q3KNT9 176 aa8.26□□□□□ -1.09
CCDC88A-202ENST00000336838 CYYR1Q96J86 154 aa8.26□□□□□ -1.09
CCDC88A-202ENST00000336838 RCHY1Q96PM5 261 aa8.26□□□□□ -1.09
CCDC88A-202ENST00000336838 SPACA3Q8IXA5 215 aa8.26□□□□□ -1.09
CCDC88A-202ENST00000336838 S4R3C0 116 aa8.26□□□□□ -1.09
CCDC88A-202ENST00000336838 NDUFA4O00483 81 aa8.26□□□□□ -1.09
CCDC88A-202ENST00000336838 PRDM6Q9NQX0 595 aa8.26□□□□□ -1.09
CCDC88A-202ENST00000336838 ACYP1P07311 99 aa8.26□□□□□ -1.09
CCDC88A-202ENST00000336838 ADAMTS20P59510 1910 aa8.26□□□□□ -1.09
CCDC88A-202ENST00000336838 IGHV2-70DA0A0C4DH43 119 aa8.26□□□□□ -1.09
CCDC88A-202ENST00000336838 A0A0G2JNJ9 132 aa8.26□□□□□ -1.09
CCDC88A-202ENST00000336838 TRBV6-1A0A0K0K1D8 114 aa8.26□□□□□ -1.09
CCDC88A-202ENST00000336838 H3BQ85 93 aa8.26□□□□□ -1.09
CCDC88A-202ENST00000336838 C10orf55Q5SWW7 151 aa8.26□□□□□ -1.09
CCDC88A-202ENST00000336838 HS3ST6Q96QI5 342 aa8.26□□□□□ -1.09
CCDC88A-202ENST00000336838 Q9UFV3 132 aa8.26□□□□□ -1.09
CCDC88A-202ENST00000336838 RSPO1Q2MKA7 263 aaPredicted RBP8.25□□□□□ -1.09
CCDC88A-202ENST00000336838 KLHDC3Q9BQ90 382 aa8.25□□□□□ -1.09
CCDC88A-202ENST00000336838 SMIM2Q9BVW6 85 aa8.25□□□□□ -1.09
CCDC88A-202ENST00000336838 MYO9AB2RTY4 2548 aa8.25□□□□□ -1.09
CCDC88A-202ENST00000336838 MRPL51Q4U2R6 128 aaKnown RBP8.25□□□□□ -1.09
CCDC88A-202ENST00000336838 PROK2Q9HC23 129 aa8.25□□□□□ -1.09
CCDC88A-202ENST00000336838 HIGD1BQ9P298 99 aa8.25□□□□□ -1.09
CCDC88A-202ENST00000336838 IGKV3-20P01619 116 aa8.25□□□□□ -1.09
CCDC88A-202ENST00000336838 SIGLEC8Q9NYZ4 499 aa8.25□□□□□ -1.09
CCDC88A-202ENST00000336838 PRSS47A8MTI9 375 aa8.24□□□□□ -1.09
CCDC88A-202ENST00000336838 SRD5A1P18405 259 aa8.24□□□□□ -1.09
CCDC88A-202ENST00000336838 DEFB125Q8N687 156 aa8.24□□□□□ -1.09
CCDC88A-202ENST00000336838 IGHV1-69DA0A0B4J2H0 117 aa8.24□□□□□ -1.09
CCDC88A-202ENST00000336838 TRGV4A0A0C4DH28 118 aa8.24□□□□□ -1.09
CCDC88A-202ENST00000336838 FOXG1P55316 489 aaPredicted RBP8.24□□□□□ -1.09
CCDC88A-202ENST00000336838 C2orf66Q6UXQ4 117 aa8.24□□□□□ -1.09
CCDC88A-202ENST00000336838 TOMM7Q9P0U1 55 aa8.24□□□□□ -1.09
CCDC88A-202ENST00000336838 IGLL1P15814 213 aa8.24□□□□□ -1.09
CCDC88A-202ENST00000336838 C14orf178Q8N769 122 aaPredicted RBP8.24□□□□□ -1.09
CCDC88A-202ENST00000336838 PRO1854Q9UHT4 67 aa8.24□□□□□ -1.09
CCDC88A-202ENST00000336838 HAPLN4Q86UW8 402 aa8.24□□□□□ -1.09
CCDC88A-202ENST00000336838 BDP1A6H8Y1 2624 aa8.24□□□□□ -1.09
CCDC88A-202ENST00000336838 GTSF1LQ9H1H1 148 aa8.24□□□□□ -1.09
CCDC88A-202ENST00000336838 ZNF581Q9P0T4 197 aa8.24□□□□□ -1.09
CCDC88A-202ENST00000336838 IGF2-ASQ6U949 168 aa8.23□□□□□ -1.09
CCDC88A-202ENST00000336838 TMEM105Q8N8V8 129 aa8.23□□□□□ -1.09
CCDC88A-202ENST00000336838 LHBP01229 141 aa8.23□□□□□ -1.09
CCDC88A-202ENST00000336838 ATRXP46100 2492 aa8.23□□□□□ -1.09
CCDC88A-202ENST00000336838 PTPRBP23467 1997 aa8.23□□□□□ -1.09
CCDC88A-202ENST00000336838 COL4A3Q01955 1670 aa8.23□□□□□ -1.09
CCDC88A-202ENST00000336838 A0A087WX48 190 aa8.23□□□□□ -1.09
CCDC88A-202ENST00000336838 WDR86Q86TI4 376 aa8.23□□□□□ -1.09
CCDC88A-202ENST00000336838 WT1-ASQ06250 92 aa8.23□□□□□ -1.09
CCDC88A-202ENST00000336838 ZNF876PQ49A33 203 aa8.23□□□□□ -1.09
CCDC88A-202ENST00000336838 RNF166Q96A37 237 aaPredicted RBP8.23□□□□□ -1.09
CCDC88A-202ENST00000336838 TRAV13-2A0A0B4J235 113 aa8.23□□□□□ -1.09
CCDC88A-202ENST00000336838 TRAV40A0A0B4J280 105 aa8.22□□□□□ -1.09
CCDC88A-202ENST00000336838 IGLC1P0CG04 106 aa8.22□□□□□ -1.09
CCDC88A-202ENST00000336838 PTPRSQ13332 1948 aa8.22□□□□□ -1.09
CCDC88A-202ENST00000336838 DKK1O94907 266 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 186.9 ms