RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 OTOGLQ3ZCN5 2332 aa11.67□□□□□ -0.54
TCOF1-201ENST00000323668 SFTA2Q6UW10 78 aa11.67□□□□□ -0.54
TCOF1-201ENST00000323668 CHAC1Q9BUX1 264 aa11.67□□□□□ -0.54
TCOF1-201ENST00000323668 NPYP01303 97 aa11.67□□□□□ -0.54
TCOF1-201ENST00000323668 TP53TG3Q9ULZ0 132 aa11.67□□□□□ -0.54
TCOF1-201ENST00000323668 HCFC1P51610 2035 aa11.67□□□□□ -0.54
TCOF1-201ENST00000323668 EFNA4P52798 201 aa11.66□□□□□ -0.54
TCOF1-201ENST00000323668 SAMD13Q5VXD3 122 aa11.66□□□□□ -0.54
TCOF1-201ENST00000323668 LINC00477Q96M19 166 aa11.66□□□□□ -0.54
TCOF1-201ENST00000323668 MOB4Q9Y3A3 225 aa11.66□□□□□ -0.54
TCOF1-201ENST00000323668 PRSS33Q8NF86 280 aa11.66□□□□□ -0.54
TCOF1-201ENST00000323668 NCKAP5O14513 1909 aa11.66□□□□□ -0.54
TCOF1-201ENST00000323668 IGLV2-23P01705 113 aa11.66□□□□□ -0.54
TCOF1-201ENST00000323668 RNF182Q8N6D2 247 aa11.66□□□□□ -0.54
TCOF1-201ENST00000323668 LINC00574Q9H8X3 128 aa11.66□□□□□ -0.54
TCOF1-201ENST00000323668 C9orf118A6NHY6 69 aa11.66□□□□□ -0.54
TCOF1-201ENST00000323668 H7C1H1 209 aa11.66□□□□□ -0.54
TCOF1-201ENST00000323668 I3L2K1 104 aa11.66□□□□□ -0.54
TCOF1-201ENST00000323668 DEFB125Q8N687 156 aa11.66□□□□□ -0.54
TCOF1-201ENST00000323668 CD300EQ496F6 205 aaPredicted RBP11.65□□□□□ -0.54
TCOF1-201ENST00000323668 DPH3P1Q9H4G8 78 aa11.65□□□□□ -0.54
TCOF1-201ENST00000323668 TRAV40A0A0B4J280 105 aa11.65□□□□□ -0.54
TCOF1-201ENST00000323668 SHISA9B4DS77 424 aa11.65□□□□□ -0.54
TCOF1-201ENST00000323668 GAGE13Q4V321 117 aa11.65□□□□□ -0.54
TCOF1-201ENST00000323668 FAM110DQ8TAY7 271 aaPredicted RBP11.65□□□□□ -0.54
TCOF1-201ENST00000323668 VGLL1Q99990 258 aa11.65□□□□□ -0.54
TCOF1-201ENST00000323668 C14orf178Q8N769 122 aaPredicted RBP11.65□□□□□ -0.55
TCOF1-201ENST00000323668 Q8N7P7 452 aa11.65□□□□□ -0.55
TCOF1-201ENST00000323668 TMEM8BA6NDV4 472 aa11.64□□□□□ -0.55
TCOF1-201ENST00000323668 LINC01549A6NIU2 74 aa11.64□□□□□ -0.55
TCOF1-201ENST00000323668 K7EIM0 57 aa11.64□□□□□ -0.55
TCOF1-201ENST00000323668 SAA4P35542 130 aa11.64□□□□□ -0.55
TCOF1-201ENST00000323668 IGKV1D-37A0A075B6S9 117 aa11.64□□□□□ -0.55
TCOF1-201ENST00000323668 CCL19Q99731 98 aa11.64□□□□□ -0.55
TCOF1-201ENST00000323668 A0A1B0GV72 72 aa11.64□□□□□ -0.55
TCOF1-201ENST00000323668 CRYGCP07315 174 aa11.64□□□□□ -0.55
TCOF1-201ENST00000323668 SIGMAR1Q99720 223 aa11.64□□□□□ -0.55
TCOF1-201ENST00000323668 BEX4Q9NWD9 120 aaPredicted RBP11.64□□□□□ -0.55
TCOF1-201ENST00000323668 ATP6V0E1O15342 81 aa11.63□□□□□ -0.55
TCOF1-201ENST00000323668 IL17RELQ6ZVW7 336 aa11.63□□□□□ -0.55
TCOF1-201ENST00000323668 IGHV2-70DA0A0C4DH43 119 aa11.63□□□□□ -0.55
TCOF1-201ENST00000323668 NPFFO15130 113 aa11.63□□□□□ -0.55
TCOF1-201ENST00000323668 Q8N8P6 123 aa11.63□□□□□ -0.55
TCOF1-201ENST00000323668 GEMIN7Q9H840 131 aaKnown RBP11.63□□□□□ -0.55
TCOF1-201ENST00000323668 LINC01545Q5VT33 79 aa11.63□□□□□ -0.55
TCOF1-201ENST00000323668 C2orf70A6NJV1 201 aa11.62□□□□□ -0.55
TCOF1-201ENST00000323668 EGR2P11161 476 aaPredicted RBP11.62□□□□□ -0.55
TCOF1-201ENST00000323668 NDUFS7O75251 213 aa11.62□□□□□ -0.55
TCOF1-201ENST00000323668 SRD5A1P18405 259 aa11.62□□□□□ -0.55
TCOF1-201ENST00000323668 SP5Q6BEB4 398 aaPredicted RBP11.62□□□□□ -0.55
TCOF1-201ENST00000323668 TNFRSF18Q9Y5U5 241 aa11.62□□□□□ -0.55
TCOF1-201ENST00000323668 C19orf71A6NCJ1 209 aa11.62□□□□□ -0.55
TCOF1-201ENST00000323668 IGLV1-47P01700 117 aa11.62□□□□□ -0.55
TCOF1-201ENST00000323668 COL5A1P20908 1838 aaPredicted RBP11.62□□□□□ -0.55
TCOF1-201ENST00000323668 G3V318 75 aa11.61□□□□□ -0.55
TCOF1-201ENST00000323668 MBD6Q96DN6 1003 aa11.61□□□□□ -0.55
TCOF1-201ENST00000323668 VCX2Q9H322 139 aa11.61□□□□□ -0.55
TCOF1-201ENST00000323668 DYSFO75923 2080 aa11.61□□□□□ -0.55
TCOF1-201ENST00000323668 A0A1B0GXF2 115 aa11.61□□□□□ -0.55
TCOF1-201ENST00000323668 UBE2E1P51965 193 aa11.61□□□□□ -0.55
TCOF1-201ENST00000323668 GDF5OSQ5U4N7 250 aa11.61□□□□□ -0.55
TCOF1-201ENST00000323668 DTX2Q86UW9 622 aa11.61□□□□□ -0.55
TCOF1-201ENST00000323668 DUX5Q96PT3 197 aa11.61□□□□□ -0.55
TCOF1-201ENST00000323668 K7EP13 123 aa11.61□□□□□ -0.55
TCOF1-201ENST00000323668 CIRBPQ14011 172 aaKnown RBP11.61□□□□□ -0.55
TCOF1-201ENST00000323668 TNRC6AQ8NDV7 1962 aaKnown RBP11.61□□□□□ -0.55
TCOF1-201ENST00000323668 TEX22C9J3V5 150 aa11.6□□□□□ -0.55
TCOF1-201ENST00000323668 PAX2Q02962 417 aa11.6□□□□□ -0.55
TCOF1-201ENST00000323668 RAX2Q96IS3 184 aa11.6□□□□□ -0.55
TCOF1-201ENST00000323668 PRSS22Q9GZN4 317 aa11.6□□□□□ -0.55
TCOF1-201ENST00000323668 DKK2Q9UBU2 259 aa11.6□□□□□ -0.55
TCOF1-201ENST00000323668 TGFAP01135 160 aa11.6□□□□□ -0.55
TCOF1-201ENST00000323668 WFDC12Q8WWY7 111 aa11.6□□□□□ -0.55
TCOF1-201ENST00000323668 SIVA1O15304 175 aa11.6□□□□□ -0.55
TCOF1-201ENST00000323668 HLA-DMBP28068 263 aa11.6□□□□□ -0.55
TCOF1-201ENST00000323668 SMAGPQ0VAQ4 97 aa11.6□□□□□ -0.55
TCOF1-201ENST00000323668 MRAP2Q96G30 205 aa11.6□□□□□ -0.55
TCOF1-201ENST00000323668 CSTL1Q9H114 145 aa11.6□□□□□ -0.55
TCOF1-201ENST00000323668 K7ENP7 123 aa11.6□□□□□ -0.55
TCOF1-201ENST00000323668 IGF2-ASQ6U949 168 aa11.59□□□□□ -0.55
TCOF1-201ENST00000323668 BRD3OSQ6XYD6 125 aa11.59□□□□□ -0.55
TCOF1-201ENST00000323668 LINC00322Q6ZN03 302 aaPredicted RBP11.59□□□□□ -0.55
TCOF1-201ENST00000323668 MTURNQ8N3F0 131 aa11.59□□□□□ -0.55
TCOF1-201ENST00000323668 BPESC1Q9GZL8 116 aa11.59□□□□□ -0.55
TCOF1-201ENST00000323668 KIAA1549Q9HCM3 1950 aa11.59□□□□□ -0.55
TCOF1-201ENST00000323668 SCRT2Q9NQ03 307 aa11.59□□□□□ -0.55
TCOF1-201ENST00000323668 NAV3Q8IVL0 2385 aa11.59□□□□□ -0.55
TCOF1-201ENST00000323668 C8orf86Q6ZUL3 223 aa11.59□□□□□ -0.55
TCOF1-201ENST00000323668 MLST8Q9BVC4 326 aa11.59□□□□□ -0.55
TCOF1-201ENST00000323668 FAM223BA6NKX1 122 aa11.58□□□□□ -0.55
TCOF1-201ENST00000323668 ANKRD39Q53RE8 183 aa11.58□□□□□ -0.55
TCOF1-201ENST00000323668 FAM223AQ8IWN6 122 aa11.58□□□□□ -0.55
TCOF1-201ENST00000323668 OR11H6Q8NGC7 330 aa11.58□□□□□ -0.55
TCOF1-201ENST00000323668 MRPL35Q9NZE8 188 aaKnown RBP11.58□□□□□ -0.55
TCOF1-201ENST00000323668 HTTP42858 3142 aa11.58□□□□□ -0.56
TCOF1-201ENST00000323668 K7EP34 96 aa11.58□□□□□ -0.56
TCOF1-201ENST00000323668 IGHV3OR16-12A0A075B7B8 117 aa11.58□□□□□ -0.56
TCOF1-201ENST00000323668 VCYO14598 125 aa11.58□□□□□ -0.56
TCOF1-201ENST00000323668 SUMO2P61956 95 aaKnown RBP11.58□□□□□ -0.56
TCOF1-201ENST00000323668 USMG5Q96IX5 58 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms