RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 IMMP2LQ96T52 175 aa10.65□□□□□ -0.71
SS18-201ENST00000269137 PFN1P07737 140 aaKnown RBP10.64□□□□□ -0.71
SS18-201ENST00000269137 COX8CQ7Z4L0 72 aa10.64□□□□□ -0.71
SS18-201ENST00000269137 DCANP1Q8TF63 244 aa10.64□□□□□ -0.71
SS18-201ENST00000269137 C20orf173Q96LM9 149 aa10.64□□□□□ -0.71
SS18-201ENST00000269137 VGLL1Q99990 258 aa10.64□□□□□ -0.71
SS18-201ENST00000269137 CSN3P07498 182 aa10.63□□□□□ -0.71
SS18-201ENST00000269137 ID1P41134 155 aa10.63□□□□□ -0.71
SS18-201ENST00000269137 KRTAP10-3P60369 221 aa10.63□□□□□ -0.71
SS18-201ENST00000269137 FABP9Q0Z7S8 132 aa10.63□□□□□ -0.71
SS18-201ENST00000269137 SAPCD1Q5SSQ6 148 aa10.63□□□□□ -0.71
SS18-201ENST00000269137 IBA57Q5T440 356 aaKnown RBP10.63□□□□□ -0.71
SS18-201ENST00000269137 NDUFA11Q86Y39 141 aa10.63□□□□□ -0.71
SS18-201ENST00000269137 RNASE7Q9H1E1 156 aaKnown RBP10.63□□□□□ -0.71
SS18-201ENST00000269137 MS4A6AQ9H2W1 248 aa10.63□□□□□ -0.71
SS18-201ENST00000269137 ZNF492Q9P255 531 aa10.63□□□□□ -0.71
SS18-201ENST00000269137 V9GYV3 84 aa10.63□□□□□ -0.71
SS18-201ENST00000269137 MAST4O15021 2626 aa10.63□□□□□ -0.71
SS18-201ENST00000269137 IGKV3-7A0A075B6H7 116 aa10.63□□□□□ -0.71
SS18-201ENST00000269137 PYGO2Q9BRQ0 406 aa10.63□□□□□ -0.71
SS18-201ENST00000269137 OVOL1O14753 267 aa10.62□□□□□ -0.71
SS18-201ENST00000269137 PRB4P10163 310 aaPredicted RBP10.62□□□□□ -0.71
SS18-201ENST00000269137 S100PP25815 95 aa10.62□□□□□ -0.71
SS18-201ENST00000269137 C9orf47Q6ZRZ4 202 aa10.62□□□□□ -0.71
SS18-201ENST00000269137 ZNF738Q8NE65 137 aa10.62□□□□□ -0.71
SS18-201ENST00000269137 NUDT10Q8NFP7 164 aa10.62□□□□□ -0.71
SS18-201ENST00000269137 NUDT11Q96G61 164 aa10.62□□□□□ -0.71
SS18-201ENST00000269137 PRR25Q96S07 402 aa10.62□□□□□ -0.71
SS18-201ENST00000269137 PPP1R14DQ9NXH3 145 aa10.62□□□□□ -0.71
SS18-201ENST00000269137 SIGLEC8Q9NYZ4 499 aa10.62□□□□□ -0.71
SS18-201ENST00000269137 SELENOKQ9Y6D0 94 aa10.62□□□□□ -0.71
SS18-201ENST00000269137 C19orf71A6NCJ1 209 aa10.61□□□□□ -0.71
SS18-201ENST00000269137 K7EQG2 157 aa10.61□□□□□ -0.71
SS18-201ENST00000269137 TRGC2P03986 189 aa10.61□□□□□ -0.71
SS18-201ENST00000269137 GBGT1Q8N5D6 347 aa10.61□□□□□ -0.71
SS18-201ENST00000269137 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.61□□□□□ -0.71
SS18-201ENST00000269137 AGPAT4-IT1Q9H0P7 198 aa10.61□□□□□ -0.71
SS18-201ENST00000269137 TRAV2A0A0B4J234 112 aa10.61□□□□□ -0.71
SS18-201ENST00000269137 S100A8P05109 93 aa10.61□□□□□ -0.71
SS18-201ENST00000269137 PAFAH1B2P68402 229 aa10.61□□□□□ -0.71
SS18-201ENST00000269137 ERCC8Q13216 396 aa10.61□□□□□ -0.71
SS18-201ENST00000269137 PRR27Q6MZM9 219 aa10.61□□□□□ -0.71
SS18-201ENST00000269137 KCNIP4Q6PIL6 250 aa10.61□□□□□ -0.71
SS18-201ENST00000269137 LINC00322Q6ZN03 302 aaPredicted RBP10.61□□□□□ -0.71
SS18-201ENST00000269137 ZC2HC1AQ96GY0 325 aa10.61□□□□□ -0.71
SS18-201ENST00000269137 IL36BQ9NZH7 164 aa10.61□□□□□ -0.71
SS18-201ENST00000269137 NSUN5P1Q3KNT7 163 aa10.6□□□□□ -0.71
SS18-201ENST00000269137 C12orf57Q99622 126 aa10.6□□□□□ -0.71
SS18-201ENST00000269137 NDFIP1Q9BT67 221 aa10.6□□□□□ -0.71
SS18-201ENST00000269137 ATRQ13535 2644 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 SORL1Q92673 2214 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 ZNF705GA8MUZ8 300 aaPredicted RBP10.59□□□□□ -0.71
SS18-201ENST00000269137 GATCO43716 136 aaKnown RBP10.59□□□□□ -0.71
SS18-201ENST00000269137 HIST1H2BKO60814 126 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 HIST1H2BJP06899 126 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 HOXA5P20719 270 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 HIST1H2BOP23527 126 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 HIST1H2BBP33778 126 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 ZNF138P52744 262 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 HIST1H2BDP58876 126 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 SNRPD3P62318 126 aaKnown RBP10.59□□□□□ -0.71
SS18-201ENST00000269137 HIST1H2BCP62807 126 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 HIST2H2BEQ16778 126 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 DEFB114Q30KQ6 69 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.59□□□□□ -0.71
SS18-201ENST00000269137 TMEM78Q5T7P6 136 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 WFDC3Q8IUB2 231 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 Q8TAT8 98 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 DYNLRB2Q8TF09 96 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 HIST1H2BHQ93079 126 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 DAZAP1Q96EP5 407 aaKnown RBP10.59□□□□□ -0.71
SS18-201ENST00000269137 LINC00477Q96M19 166 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 HIST1H2BNQ99877 126 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 HIST1H2BMQ99879 126 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 SRD5A3Q9H8P0 318 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 LENEPQ9Y5L5 61 aa10.59□□□□□ -0.71
SS18-201ENST00000269137 TRAV9-1A0A075B6T8 112 aa10.58□□□□□ -0.72
SS18-201ENST00000269137 NPIPB6E9PJ23 425 aa10.58□□□□□ -0.72
SS18-201ENST00000269137 PHOX2AO14813 284 aa10.58□□□□□ -0.72
SS18-201ENST00000269137 CT45A10P0DMU9 189 aa10.58□□□□□ -0.72
SS18-201ENST00000269137 NDUFA6P56556 154 aa10.58□□□□□ -0.72
SS18-201ENST00000269137 CT83Q5H943 113 aa10.58□□□□□ -0.72
SS18-201ENST00000269137 OR8A1Q8NGG7 326 aa10.58□□□□□ -0.72
SS18-201ENST00000269137 OR10J6PQ8NGY7 276 aa10.58□□□□□ -0.72
SS18-201ENST00000269137 BTF3L4Q96K17 158 aa10.58□□□□□ -0.72
SS18-201ENST00000269137 C8orf49Q96NF6 230 aa10.58□□□□□ -0.72
SS18-201ENST00000269137 ASCL2Q99929 193 aa10.58□□□□□ -0.72
SS18-201ENST00000269137 GPR61Q9BZJ8 451 aa10.58□□□□□ -0.72
SS18-201ENST00000269137 TRAV25A0A0B4J276 109 aa10.58□□□□□ -0.72
SS18-201ENST00000269137 P01737 135 aa10.58□□□□□ -0.72
SS18-201ENST00000269137 TFPI2P48307 235 aa10.58□□□□□ -0.72
SS18-201ENST00000269137 CRIP1P50238 77 aa10.58□□□□□ -0.72
SS18-201ENST00000269137 RBPMS2Q6ZRY4 209 aaKnown RBP10.58□□□□□ -0.72
SS18-201ENST00000269137 OR4B1Q8NGF8 309 aa10.58□□□□□ -0.72
SS18-201ENST00000269137 FRZBQ92765 325 aa10.58□□□□□ -0.72
SS18-201ENST00000269137 SMIM27A0A1W2PRY6 76 aa10.57□□□□□ -0.72
SS18-201ENST00000269137 TRGC1P0CF51 173 aa10.57□□□□□ -0.72
SS18-201ENST00000269137 FAM3BP58499 235 aaPredicted RBP10.57□□□□□ -0.72
SS18-201ENST00000269137 TMEM61Q8N0U2 210 aa10.57□□□□□ -0.72
SS18-201ENST00000269137 RPP21Q9H633 154 aaKnown RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 139.4 ms