RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 LHBP01229 141 aa3.67□□□□□ -1.82
VPS13C-201ENST00000249837 GAGE12BA1L429 117 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 ORMDL2Q53FV1 153 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 KIR2DL4Q99706 377 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 CTSZQ9UBR2 303 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 SRSF1Q07955 248 aaKnown RBP eCLIP3.66□□□□□ -1.82
VPS13C-201ENST00000249837 PLA2G2CQ5R387 149 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 GTSF1LQ9H1H1 148 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 IGKV1-17P01599 117 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 COX8AP10176 69 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 CD300EQ496F6 205 aaPredicted RBP3.66□□□□□ -1.82
VPS13C-201ENST00000249837 RNASE8Q8TDE3 154 aaKnown RBP3.66□□□□□ -1.82
VPS13C-201ENST00000249837 EIF4EBP1Q13541 118 aaPredicted RBP3.66□□□□□ -1.82
VPS13C-201ENST00000249837 SEM1Q6ZVN7 128 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 PRSS33Q8NF86 280 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 CEACAM8P31997 349 aaPredicted RBP3.66□□□□□ -1.82
VPS13C-201ENST00000249837 Q5PR19 223 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 SPRY4Q9C004 299 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 CHTOPQ9Y3Y2 248 aaKnown RBP3.66□□□□□ -1.82
VPS13C-201ENST00000249837 E7EUB6 86 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 OCIAD2Q56VL3 154 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 ZNF562Q6V9R5 426 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 PCP2Q8IVA1 136 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 CST9LQ9H4G1 147 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 TRAV26-2A0A0B4J265 109 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 GAGE1Q13065 139 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 TEX36Q5VZQ5 186 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 FAM104BQ5XKR9 115 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 ZNF479Q96JC4 524 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 SIGMAR1Q99720 223 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 TRAV21A0A0B4J279 112 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 HOXA3O43365 443 aaPredicted RBP3.66□□□□□ -1.82
VPS13C-201ENST00000249837 IGLV2-8P01709 118 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 IGKV3OR2-268A0A0C4DH90 116 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 OVOL1O14753 267 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 IGF2BP2-AS1Q96M15 143 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 TRAV2A0A0B4J234 112 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 PAX8Q06710 450 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 C14orf178Q8N769 122 aaPredicted RBP3.66□□□□□ -1.82
VPS13C-201ENST00000249837 CHAC1Q9BUX1 264 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 GEMIN7Q9H840 131 aaKnown RBP3.66□□□□□ -1.82
VPS13C-201ENST00000249837 PSMG4Q5JS54 123 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 WIPF2Q8TF74 440 aaPredicted RBP3.66□□□□□ -1.82
VPS13C-201ENST00000249837 CYSLTR1Q9Y271 337 aa3.66□□□□□ -1.82
VPS13C-201ENST00000249837 IGHV3-64A0A075B6Q5 118 aa3.65□□□□□ -1.82
VPS13C-201ENST00000249837 TRAV41A0A0B4J266 112 aa3.65□□□□□ -1.82
VPS13C-201ENST00000249837 C9orf118A6NHY6 69 aa3.65□□□□□ -1.82
VPS13C-201ENST00000249837 ZNF815PA8K554 130 aa3.65□□□□□ -1.82
VPS13C-201ENST00000249837 C3orf36Q3SXR2 165 aa3.65□□□□□ -1.82
VPS13C-201ENST00000249837 GAGE13Q4V321 117 aa3.65□□□□□ -1.82
VPS13C-201ENST00000249837 ANKRD39Q53RE8 183 aa3.65□□□□□ -1.82
VPS13C-201ENST00000249837 PSMB11A5LHX3 300 aa3.65□□□□□ -1.82
VPS13C-201ENST00000249837 CEACAM4O75871 244 aa3.65□□□□□ -1.82
VPS13C-201ENST00000249837 PPP1R17O96001 155 aa3.65□□□□□ -1.82
VPS13C-201ENST00000249837 CD7P09564 240 aa3.65□□□□□ -1.82
VPS13C-201ENST00000249837 BRD3OSQ6XYD6 125 aa3.65□□□□□ -1.82
VPS13C-201ENST00000249837 GTSF1Q8WW33 167 aa3.65□□□□□ -1.82
VPS13C-201ENST00000249837 KLRB1Q12918 225 aa3.65□□□□□ -1.82
VPS13C-201ENST00000249837 MRPL35Q9NZE8 188 aaKnown RBP3.65□□□□□ -1.82
VPS13C-201ENST00000249837 USP24Q9UPU5 2620 aa3.65□□□□□ -1.82
VPS13C-201ENST00000249837 PRAC2D3DTV9 90 aa3.65□□□□□ -1.82
VPS13C-201ENST00000249837 H3BRM9 83 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 RNF5Q99942 180 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 C10orf142B7Z368 130 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 PRSS46E5RG02 174 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 TNFRSF6BO95407 300 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 LYPD1Q8N2G4 141 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 PRR25Q96S07 402 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 SLC50A1Q9BRV3 221 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 NDUFS7O75251 213 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 UCNP55089 124 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 SNRPD3P62318 126 aaKnown RBP3.65□□□□□ -1.83
VPS13C-201ENST00000249837 SIGLEC15Q6ZMC9 328 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 NEGR1Q7Z3B1 354 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 C7orf69Q9H7B7 122 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 LY6DQ14210 128 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 MSRB1Q9NZV6 116 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 A0A087WWL8 130 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 TAX1BP3O14907 124 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 GRNP28799 593 aaKnown RBP3.65□□□□□ -1.83
VPS13C-201ENST00000249837 DUX5Q96PT3 197 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 CSTL1Q9H114 145 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 DKK4Q9UBT3 224 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 TMEM8BA6NDV4 472 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 NPFFO15130 113 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 PRTN3P24158 256 aa3.65□□□□□ -1.83
VPS13C-201ENST00000249837 M0R1W7 72 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 OR5A1Q8NGJ0 315 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 VCX2Q9H322 139 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 CGB3P0DN86 165 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 CGB7P0DN87 165 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 SRSF8Q9BRL6 282 aaKnown RBP3.64□□□□□ -1.83
VPS13C-201ENST00000249837 ZNF688P0C7X2 276 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 SAA4P35542 130 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 EFNA4P52798 201 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 CCL19Q99731 98 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 NPFFR1Q9GZQ6 430 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 GFRA4Q9GZZ7 299 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 A0A0U1RRA0 63 aa3.64□□□□□ -1.83
VPS13C-201ENST00000249837 FCN3O75636 299 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms