RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 RPL11P62913 178 aaKnown RBP13.78□□□□□ -0.2
VIM-201ENST00000224237 GATCO43716 136 aaKnown RBP13.77□□□□□ -0.21
VIM-201ENST00000224237 DEFB136Q30KP8 78 aa13.77□□□□□ -0.21
VIM-201ENST00000224237 GBGT1Q8N5D6 347 aa13.77□□□□□ -0.21
VIM-201ENST00000224237 KLHL30-AS1Q8NEE0 82 aa13.77□□□□□ -0.21
VIM-201ENST00000224237 SOCS3O14543 225 aa13.76□□□□□ -0.21
VIM-201ENST00000224237 NDUFA7O95182 113 aa13.76□□□□□ -0.21
VIM-201ENST00000224237 EDN2P20800 178 aa13.76□□□□□ -0.21
VIM-201ENST00000224237 KLF5Q13887 457 aaPredicted RBP13.76□□□□□ -0.21
VIM-201ENST00000224237 OR11H1Q8NG94 326 aa13.76□□□□□ -0.21
VIM-201ENST00000224237 DAZAP1Q96EP5 407 aaKnown RBP13.76□□□□□ -0.21
VIM-201ENST00000224237 C19orf71A6NCJ1 209 aa13.76□□□□□ -0.21
VIM-201ENST00000224237 SAPCD1Q5SSQ6 148 aa13.76□□□□□ -0.21
VIM-201ENST00000224237 SAMD13Q5VXD3 122 aa13.76□□□□□ -0.21
VIM-201ENST00000224237 TCF24Q7RTU0 167 aa13.76□□□□□ -0.21
VIM-201ENST00000224237 DPF1Q92782 380 aa13.76□□□□□ -0.21
VIM-201ENST00000224237 P01737 135 aa13.75□□□□□ -0.21
VIM-201ENST00000224237 LINC00322Q6ZN03 302 aaPredicted RBP13.75□□□□□ -0.21
VIM-201ENST00000224237 C11orf44Q8N8P7 122 aa13.75□□□□□ -0.21
VIM-201ENST00000224237 ZC2HC1AQ96GY0 325 aa13.75□□□□□ -0.21
VIM-201ENST00000224237 VGLL1Q99990 258 aa13.75□□□□□ -0.21
VIM-201ENST00000224237 SMIM27A0A1W2PRY6 76 aa13.74□□□□□ -0.21
VIM-201ENST00000224237 PRAC2D3DTV9 90 aa13.74□□□□□ -0.21
VIM-201ENST00000224237 SLURP1P55000 103 aa13.74□□□□□ -0.21
VIM-201ENST00000224237 CT83Q5H943 113 aa13.74□□□□□ -0.21
VIM-201ENST00000224237 OR1N2Q8NGR9 330 aa13.74□□□□□ -0.21
VIM-201ENST00000224237 PRR25Q96S07 402 aa13.74□□□□□ -0.21
VIM-201ENST00000224237 SELENOKQ9Y6D0 94 aa13.74□□□□□ -0.21
VIM-201ENST00000224237 C2orf70A6NJV1 201 aa13.74□□□□□ -0.21
VIM-201ENST00000224237 TCF21O43680 179 aa13.74□□□□□ -0.21
VIM-201ENST00000224237 CT45A10P0DMU9 189 aa13.74□□□□□ -0.21
VIM-201ENST00000224237 COX8CQ7Z4L0 72 aa13.74□□□□□ -0.21
VIM-201ENST00000224237 NDFIP1Q9BT67 221 aa13.74□□□□□ -0.21
VIM-201ENST00000224237 RPP21Q9H633 154 aaKnown RBP13.74□□□□□ -0.21
VIM-201ENST00000224237 CA1P00915 261 aaPredicted RBP13.73□□□□□ -0.21
VIM-201ENST00000224237 CBLN1P23435 193 aa13.73□□□□□ -0.21
VIM-201ENST00000224237 ASCL2Q99929 193 aa13.73□□□□□ -0.21
VIM-201ENST00000224237 PEMTQ9UBM1 199 aa13.73□□□□□ -0.21
VIM-201ENST00000224237 IGKV3-7A0A075B6H7 116 aa13.72□□□□□ -0.21
VIM-201ENST00000224237 NPIPB6E9PJ23 425 aa13.72□□□□□ -0.21
VIM-201ENST00000224237 M0QZ24 198 aa13.72□□□□□ -0.21
VIM-201ENST00000224237 CD28P10747 220 aa13.72□□□□□ -0.21
VIM-201ENST00000224237 RPL19P84098 196 aaKnown RBP13.72□□□□□ -0.21
VIM-201ENST00000224237 ACTL10Q5JWF8 245 aa13.72□□□□□ -0.21
VIM-201ENST00000224237 ZNF738Q8NE65 137 aa13.72□□□□□ -0.21
VIM-201ENST00000224237 OR4B1Q8NGF8 309 aa13.72□□□□□ -0.21
VIM-201ENST00000224237 Q8TAT8 98 aa13.72□□□□□ -0.21
VIM-201ENST00000224237 TSKUQ8WUA8 353 aa13.72□□□□□ -0.21
VIM-201ENST00000224237 C8orf49Q96NF6 230 aa13.72□□□□□ -0.21
VIM-201ENST00000224237 S100A2P29034 98 aa13.72□□□□□ -0.21
VIM-201ENST00000224237 C20orf173Q96LM9 149 aa13.72□□□□□ -0.21
VIM-201ENST00000224237 DUX3Q96PT4 197 aa13.72□□□□□ -0.21
VIM-201ENST00000224237 RNF114Q9Y508 228 aa13.72□□□□□ -0.21
VIM-201ENST00000224237 TSSC4Q9Y5U2 329 aaPredicted RBP13.72□□□□□ -0.21
VIM-201ENST00000224237 HAX1O00165 279 aa13.71□□□□□ -0.21
VIM-201ENST00000224237 ERCC8Q13216 396 aa13.71□□□□□ -0.21
VIM-201ENST00000224237 TMEM78Q5T7P6 136 aa13.71□□□□□ -0.21
VIM-201ENST00000224237 C9orf47Q6ZRZ4 202 aa13.71□□□□□ -0.21
VIM-201ENST00000224237 HIST3H2BBQ8N257 126 aa13.71□□□□□ -0.21
VIM-201ENST00000224237 DCANP1Q8TF63 244 aa13.71□□□□□ -0.21
VIM-201ENST00000224237 IFITM10A6NMD0 228 aa13.7□□□□□ -0.22
VIM-201ENST00000224237 A8MWL6 223 aa13.7□□□□□ -0.22
VIM-201ENST00000224237 ID1P41134 155 aa13.7□□□□□ -0.22
VIM-201ENST00000224237 TCL1AP56279 114 aa13.7□□□□□ -0.22
VIM-201ENST00000224237 COA6Q5JTJ3 125 aaKnown RBP13.7□□□□□ -0.22
VIM-201ENST00000224237 OR9G4Q8NGQ1 327 aa13.7□□□□□ -0.22
VIM-201ENST00000224237 OVOL1O14753 267 aa13.7□□□□□ -0.22
VIM-201ENST00000224237 CRLF1O75462 422 aa13.7□□□□□ -0.22
VIM-201ENST00000224237 CITED2Q99967 270 aaPredicted RBP13.7□□□□□ -0.22
VIM-201ENST00000224237 AGPAT4-IT1Q9H0P7 198 aa13.7□□□□□ -0.22
VIM-201ENST00000224237 PPP1R14DQ9NXH3 145 aa13.7□□□□□ -0.22
VIM-201ENST00000224237 NAT8BQ9UHF3 227 aa13.7□□□□□ -0.22
VIM-201ENST00000224237 C2CD3Q4AC94 2353 aa13.69□□□□□ -0.22
VIM-201ENST00000224237 CRIP1P50238 77 aa13.69□□□□□ -0.22
VIM-201ENST00000224237 ZNF138P52744 262 aa13.69□□□□□ -0.22
VIM-201ENST00000224237 S100A12P80511 92 aa13.69□□□□□ -0.22
VIM-201ENST00000224237 FAM162BQ5T6X4 162 aa13.69□□□□□ -0.22
VIM-201ENST00000224237 NEU1Q99519 415 aa13.69□□□□□ -0.22
VIM-201ENST00000224237 GPR61Q9BZJ8 451 aa13.69□□□□□ -0.22
VIM-201ENST00000224237 GFRA4Q9GZZ7 299 aa13.69□□□□□ -0.22
VIM-201ENST00000224237 MS4A6AQ9H2W1 248 aa13.69□□□□□ -0.22
VIM-201ENST00000224237 TRAPPC1Q9Y5R8 145 aa13.69□□□□□ -0.22
VIM-201ENST00000224237 A0A1W2PRX2 142 aa13.68□□□□□ -0.22
VIM-201ENST00000224237 IZUMO1RA6ND01 250 aa13.68□□□□□ -0.22
VIM-201ENST00000224237 PROK1P58294 105 aa13.68□□□□□ -0.22
VIM-201ENST00000224237 FHL3Q13643 280 aa13.68□□□□□ -0.22
VIM-201ENST00000224237 FAM231BA6NCW3 169 aa13.67□□□□□ -0.22
VIM-201ENST00000224237 PCP4L1A6NKN8 68 aa13.67□□□□□ -0.22
VIM-201ENST00000224237 HIGD1CA8MV81 97 aa13.67□□□□□ -0.22
VIM-201ENST00000224237 GFI1BQ5VTD9 330 aa13.67□□□□□ -0.22
VIM-201ENST00000224237 OR2D3Q8NGH3 330 aa13.67□□□□□ -0.22
VIM-201ENST00000224237 OR10J6PQ8NGY7 276 aa13.67□□□□□ -0.22
VIM-201ENST00000224237 DLX4Q92988 240 aaPredicted RBP13.67□□□□□ -0.22
VIM-201ENST00000224237 RAX2Q96IS3 184 aa13.67□□□□□ -0.22
VIM-201ENST00000224237 NUP35Q8NFH5 326 aa13.67□□□□□ -0.22
VIM-201ENST00000224237 LENEPQ9Y5L5 61 aa13.67□□□□□ -0.22
VIM-201ENST00000224237 SH2D1AO60880 128 aa13.66□□□□□ -0.22
VIM-201ENST00000224237 ADAMTSL5Q6ZMM2 481 aa13.66□□□□□ -0.22
VIM-201ENST00000224237 WFDC3Q8IUB2 231 aa13.66□□□□□ -0.22
VIM-201ENST00000224237 LINC00477Q96M19 166 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms