RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 FFAR4Q5NUL3 377 aa6.5□□□□□ -1.37
TRIM28-214ENST00000600840 C10orf113Q5VZT2 155 aa6.5□□□□□ -1.37
TRIM28-214ENST00000600840 TMEM88Q6PEY1 159 aa6.5□□□□□ -1.37
TRIM28-214ENST00000600840 MIR17HGQ75NE6 70 aa6.5□□□□□ -1.37
TRIM28-214ENST00000600840 LINC00305Q7Z4B0 112 aa6.5□□□□□ -1.37
TRIM28-214ENST00000600840 CBLN2Q8IUK8 224 aa6.5□□□□□ -1.37
TRIM28-214ENST00000600840 OR1L4Q8NGR5 311 aa6.5□□□□□ -1.37
TRIM28-214ENST00000600840 DCANP1Q8TF63 244 aa6.5□□□□□ -1.37
TRIM28-214ENST00000600840 BTF3L4Q96K17 158 aa6.5□□□□□ -1.37
TRIM28-214ENST00000600840 FAM110AQ9BQ89 295 aa6.5□□□□□ -1.37
TRIM28-214ENST00000600840 CTDSP1Q9GZU7 261 aa6.5□□□□□ -1.37
TRIM28-214ENST00000600840 A0A1W2PS18 150 aa6.49□□□□□ -1.37
TRIM28-214ENST00000600840 MAP1LC3B2A6NCE7 125 aa6.49□□□□□ -1.37
TRIM28-214ENST00000600840 COLCA2A8K830 154 aa6.49□□□□□ -1.37
TRIM28-214ENST00000600840 C9JQL5 133 aa6.49□□□□□ -1.37
TRIM28-214ENST00000600840 HMGB3O15347 200 aaKnown RBP6.49□□□□□ -1.37
TRIM28-214ENST00000600840 IGLC2P0DOY2 106 aa6.49□□□□□ -1.37
TRIM28-214ENST00000600840 FAM78BQ5VT40 261 aa6.49□□□□□ -1.37
TRIM28-214ENST00000600840 LCN12Q6JVE5 192 aa6.49□□□□□ -1.37
TRIM28-214ENST00000600840 SSX7Q7RTT5 188 aa6.49□□□□□ -1.37
TRIM28-214ENST00000600840 TCF24Q7RTU0 167 aa6.49□□□□□ -1.37
TRIM28-214ENST00000600840 DEFB125Q8N687 156 aa6.49□□□□□ -1.37
TRIM28-214ENST00000600840 OR10G9Q8NGN4 311 aa6.49□□□□□ -1.37
TRIM28-214ENST00000600840 OR10G7Q8NGN6 311 aa6.49□□□□□ -1.37
TRIM28-214ENST00000600840 PFDN5Q99471 154 aa6.49□□□□□ -1.37
TRIM28-214ENST00000600840 SLC25A2Q9BXI2 301 aa6.49□□□□□ -1.37
TRIM28-214ENST00000600840 MAP1LC3BQ9GZQ8 125 aa6.49□□□□□ -1.37
TRIM28-214ENST00000600840 TMEM14CQ9P0S9 112 aa6.49□□□□□ -1.37
TRIM28-214ENST00000600840 ARL2-SNX15V9GYD0 113 aa6.49□□□□□ -1.37
TRIM28-214ENST00000600840 A0A087X0K7 114 aa6.48□□□□□ -1.37
TRIM28-214ENST00000600840 TRAV2A0A0B4J234 112 aa6.48□□□□□ -1.37
TRIM28-214ENST00000600840 H3BQ15 152 aa6.48□□□□□ -1.37
TRIM28-214ENST00000600840 K7EQG2 157 aa6.48□□□□□ -1.37
TRIM28-214ENST00000600840 COX7A2P2O60397 106 aa6.48□□□□□ -1.37
TRIM28-214ENST00000600840 EIF3GO75821 320 aaKnown RBP eCLIP6.48□□□□□ -1.37
TRIM28-214ENST00000600840 S100A8P05109 93 aa6.48□□□□□ -1.37
TRIM28-214ENST00000600840 S100A6P06703 90 aa6.48□□□□□ -1.37
TRIM28-214ENST00000600840 CD81P60033 236 aa6.48□□□□□ -1.37
TRIM28-214ENST00000600840 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.48□□□□□ -1.37
TRIM28-214ENST00000600840 RXFP4Q8TDU9 374 aa6.48□□□□□ -1.37
TRIM28-214ENST00000600840 HIST1H2BAQ96A08 127 aa6.48□□□□□ -1.37
TRIM28-214ENST00000600840 SPATA25Q9BR10 227 aa6.48□□□□□ -1.37
TRIM28-214ENST00000600840 MRPL32Q9BYC8 188 aaKnown RBP6.48□□□□□ -1.37
TRIM28-214ENST00000600840 MS4A6AQ9H2W1 248 aa6.48□□□□□ -1.37
TRIM28-214ENST00000600840 GNG13Q9P2W3 67 aa6.48□□□□□ -1.37
TRIM28-214ENST00000600840 FUT9Q9Y231 359 aa6.48□□□□□ -1.37
TRIM28-214ENST00000600840 TRAV8-2A0A0B4J237 113 aa6.47□□□□□ -1.37
TRIM28-214ENST00000600840 HELTA6NFD8 242 aa6.47□□□□□ -1.37
TRIM28-214ENST00000600840 F6UZH7 168 aa6.47□□□□□ -1.37
TRIM28-214ENST00000600840 PDE6DO43924 150 aa6.47□□□□□ -1.37
TRIM28-214ENST00000600840 NDUFB4O95168 129 aa6.47□□□□□ -1.37
TRIM28-214ENST00000600840 STAG3L2P0CL84 134 aa6.47□□□□□ -1.37
TRIM28-214ENST00000600840 STAG3L3P0CL85 134 aa6.47□□□□□ -1.37
TRIM28-214ENST00000600840 RAB5AP20339 215 aa6.47□□□□□ -1.37
TRIM28-214ENST00000600840 MEF2BQ02080 365 aaPredicted RBP6.47□□□□□ -1.37
TRIM28-214ENST00000600840 SMUG1Q53HV7 270 aa6.47□□□□□ -1.37
TRIM28-214ENST00000600840 SIGLEC15Q6ZMC9 328 aa6.47□□□□□ -1.37
TRIM28-214ENST00000600840 GTSCR1Q86UQ5 136 aa6.47□□□□□ -1.37
TRIM28-214ENST00000600840 OR8I2Q8N0Y5 310 aa6.47□□□□□ -1.37
TRIM28-214ENST00000600840 FAM24BQ8N5W8 94 aa6.47□□□□□ -1.37
TRIM28-214ENST00000600840 RAB24Q969Q5 203 aa6.47□□□□□ -1.37
TRIM28-214ENST00000600840 GRAMD2BQ96HH9 432 aa6.47□□□□□ -1.37
TRIM28-214ENST00000600840 GPR82Q96P67 336 aa6.47□□□□□ -1.37
TRIM28-214ENST00000600840 SPAG8Q99932 426 aaPredicted RBP6.47□□□□□ -1.37
TRIM28-214ENST00000600840 ZNF586Q9NXT0 402 aa6.47□□□□□ -1.37
TRIM28-214ENST00000600840 NAT8Q9UHE5 227 aa6.47□□□□□ -1.37
TRIM28-214ENST00000600840 PLECQ15149 4684 aaKnown RBP6.47□□□□□ -1.37
TRIM28-214ENST00000600840 A0A1W2PPV4 95 aa6.46□□□□□ -1.38
TRIM28-214ENST00000600840 OR11H12B2RN74 326 aa6.46□□□□□ -1.38
TRIM28-214ENST00000600840 PYYP10082 97 aa6.46□□□□□ -1.38
TRIM28-214ENST00000600840 RPL7P18124 248 aaKnown RBP6.46□□□□□ -1.38
TRIM28-214ENST00000600840 BMI1P35226 326 aa6.46□□□□□ -1.38
TRIM28-214ENST00000600840 CDC34P49427 236 aaPredicted RBP6.46□□□□□ -1.38
TRIM28-214ENST00000600840 RHOBP62745 196 aa6.46□□□□□ -1.38
TRIM28-214ENST00000600840 CCL20P78556 96 aa6.46□□□□□ -1.38
TRIM28-214ENST00000600840 ODF3L2Q3SX64 289 aa6.46□□□□□ -1.38
TRIM28-214ENST00000600840 BPIFA4PQ86YQ2 179 aa6.46□□□□□ -1.38
TRIM28-214ENST00000600840 GBGT1Q8N5D6 347 aa6.46□□□□□ -1.38
TRIM28-214ENST00000600840 CYB561D1Q8N8Q1 229 aa6.46□□□□□ -1.38
TRIM28-214ENST00000600840 DYNLRB2Q8TF09 96 aa6.46□□□□□ -1.38
TRIM28-214ENST00000600840 FXYD5Q96DB9 178 aa6.46□□□□□ -1.38
TRIM28-214ENST00000600840 RARRES2Q99969 163 aa6.46□□□□□ -1.38
TRIM28-214ENST00000600840 SRD5A3Q9H8P0 318 aa6.46□□□□□ -1.38
TRIM28-214ENST00000600840 SLC25A22Q9H936 323 aa6.46□□□□□ -1.38
TRIM28-214ENST00000600840 NRN1Q9NPD7 142 aa6.46□□□□□ -1.38
TRIM28-214ENST00000600840 TRBV19A0A075B6N1 114 aa6.45□□□□□ -1.38
TRIM28-214ENST00000600840 PPP1R2P9O14990 202 aa6.45□□□□□ -1.38
TRIM28-214ENST00000600840 ZNF253O75346 499 aa6.45□□□□□ -1.38
TRIM28-214ENST00000600840 HIST1H1EP10412 219 aaKnown RBP6.45□□□□□ -1.38
TRIM28-214ENST00000600840 S100A7P31151 101 aa6.45□□□□□ -1.38
TRIM28-214ENST00000600840 S100A12P80511 92 aa6.45□□□□□ -1.38
TRIM28-214ENST00000600840 LCN15Q6UWW0 184 aa6.45□□□□□ -1.38
TRIM28-214ENST00000600840 RBPMS2Q6ZRY4 209 aaKnown RBP6.45□□□□□ -1.38
TRIM28-214ENST00000600840 S100A7AQ86SG5 101 aa6.45□□□□□ -1.38
TRIM28-214ENST00000600840 ANAPC16Q96DE5 110 aa6.45□□□□□ -1.38
TRIM28-214ENST00000600840 OR51M1Q9H341 326 aa6.45□□□□□ -1.38
TRIM28-214ENST00000600840 SDF2L1Q9HCN8 221 aa6.45□□□□□ -1.38
TRIM28-214ENST00000600840 ZNF331Q9NQX6 463 aaPredicted RBP6.45□□□□□ -1.38
TRIM28-214ENST00000600840 RNF24Q9Y225 148 aa6.45□□□□□ -1.38
TRIM28-214ENST00000600840 IGKV3-7A0A075B6H7 116 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms