RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 POLR2GP62487 172 aaKnown RBP eCLIP2.51□□□□□ -2.01
VPS13C-210ENST00000561258 HIST1H3AP68431 136 aa2.51□□□□□ -2.01
VPS13C-210ENST00000561258 H3F3AP84243 136 aa2.51□□□□□ -2.01
VPS13C-210ENST00000561258 TAF1AQ15573 450 aaPredicted RBP2.51□□□□□ -2.01
VPS13C-210ENST00000561258 CCSMST1Q4G0I0 132 aa2.51□□□□□ -2.01
VPS13C-210ENST00000561258 PPP1R2P3Q6NXS1 205 aa2.51□□□□□ -2.01
VPS13C-210ENST00000561258 FAM173BQ6P4H8 233 aa2.51□□□□□ -2.01
VPS13C-210ENST00000561258 S100A7AQ86SG5 101 aa2.51□□□□□ -2.01
VPS13C-210ENST00000561258 TBC1D19Q8N5T2 526 aa2.51□□□□□ -2.01
VPS13C-210ENST00000561258 OR4X1Q8NH49 305 aa2.51□□□□□ -2.01
VPS13C-210ENST00000561258 SMCR5Q8TEV8 140 aa2.51□□□□□ -2.01
VPS13C-210ENST00000561258 MINOS1-NBL1R4GNA1 71 aa2.51□□□□□ -2.01
VPS13C-210ENST00000561258 LOC285095A0A1B0GVY8 99 aa2.5□□□□□ -2.01
VPS13C-210ENST00000561258 OR4C46A6NHA9 309 aa2.5□□□□□ -2.01
VPS13C-210ENST00000561258 FAAHO00519 579 aa2.5□□□□□ -2.01
VPS13C-210ENST00000561258 CCL22O00626 93 aa2.5□□□□□ -2.01
VPS13C-210ENST00000561258 CST2P09228 141 aa2.5□□□□□ -2.01
VPS13C-210ENST00000561258 RPL5P46777 297 aaKnown RBP2.5□□□□□ -2.01
VPS13C-210ENST00000561258 XCL1P47992 114 aa2.5□□□□□ -2.01
VPS13C-210ENST00000561258 TAS2R20P59543 309 aa2.5□□□□□ -2.01
VPS13C-210ENST00000561258 RPL30P62888 115 aaKnown RBP2.5□□□□□ -2.01
VPS13C-210ENST00000561258 CDK10Q15131 360 aa2.5□□□□□ -2.01
VPS13C-210ENST00000561258 IAH1Q2TAA2 248 aaPredicted RBP2.5□□□□□ -2.01
VPS13C-210ENST00000561258 DEFB112Q30KQ8 113 aa2.5□□□□□ -2.01
VPS13C-210ENST00000561258 LINC00301Q8NCQ3 95 aa2.5□□□□□ -2.01
VPS13C-210ENST00000561258 OR5C1Q8NGR4 320 aa2.5□□□□□ -2.01
VPS13C-210ENST00000561258 OR13C4Q8NGS5 318 aa2.5□□□□□ -2.01
VPS13C-210ENST00000561258 OR13C8Q8NGS7 320 aa2.5□□□□□ -2.01
VPS13C-210ENST00000561258 BORCS7Q96B45 105 aa2.5□□□□□ -2.01
VPS13C-210ENST00000561258 ERMAPQ96PL5 475 aaPredicted RBP2.5□□□□□ -2.01
VPS13C-210ENST00000561258 PAQR5Q9NXK6 330 aaPredicted RBP2.5□□□□□ -2.01
VPS13C-210ENST00000561258 IDI2-AS1Q9NZ38 188 aa2.5□□□□□ -2.01
VPS13C-210ENST00000561258 DOK5Q9P104 306 aa2.5□□□□□ -2.01
VPS13C-210ENST00000561258 SOX21Q9Y651 276 aaPredicted RBP2.5□□□□□ -2.01
VPS13C-210ENST00000561258 DOCK11Q5JSL3 2073 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 FAM236DA0A1B0GTK5 79 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 ZNF878C9JN71 531 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 NOS1APO75052 506 aaPredicted RBP2.49□□□□□ -2.01
VPS13C-210ENST00000561258 NPYP01303 97 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 HLA-DRB1P01911 266 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 CTSGP08311 255 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 FAM236CP0DP71 79 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 DSCR4P56555 118 aaPredicted RBP2.49□□□□□ -2.01
VPS13C-210ENST00000561258 GLO1Q04760 184 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 KCNJ8Q15842 424 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 GLT8D1Q68CQ7 371 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 NCBP2-AS2Q69YL0 99 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 NDUFA11Q86Y39 141 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 ZNF283Q8N7M2 679 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 ZNF676Q8N7Q3 588 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 DEFB108BQ8NET1 73 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 WFDC9Q8NEX5 89 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 OR10X1Q8NGY0 326 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 SIGMAR1Q99720 223 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 C9orf16Q9BUW7 83 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 TTTY13Q9BZ97 58 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 PLECQ15149 4684 aaKnown RBP2.49□□□□□ -2.01
VPS13C-210ENST00000561258 ALMS1Q8TCU4 4167 aa2.49□□□□□ -2.01
VPS13C-210ENST00000561258 TRBV20OR9-2A0A075B6H5 130 aa2.48□□□□□ -2.01
VPS13C-210ENST00000561258 TRAV26-2A0A0B4J265 109 aa2.48□□□□□ -2.01
VPS13C-210ENST00000561258 TMEM235A6NFC5 223 aa2.48□□□□□ -2.01
VPS13C-210ENST00000561258 OR1I1O60431 355 aa2.48□□□□□ -2.01
VPS13C-210ENST00000561258 SRP19P09132 144 aaKnown RBP2.48□□□□□ -2.01
VPS13C-210ENST00000561258 CD24P25063 80 aa2.48□□□□□ -2.01
VPS13C-210ENST00000561258 RAB13P51153 203 aa2.48□□□□□ -2.01
VPS13C-210ENST00000561258 FXYD7P58549 80 aa2.48□□□□□ -2.01
VPS13C-210ENST00000561258 RPS20P60866 119 aaKnown RBP2.48□□□□□ -2.01
VPS13C-210ENST00000561258 GRK1Q15835 563 aa2.48□□□□□ -2.01
VPS13C-210ENST00000561258 TMEM42Q69YG0 159 aa2.48□□□□□ -2.01
VPS13C-210ENST00000561258 SMARCD3Q6STE5 483 aa2.48□□□□□ -2.01
VPS13C-210ENST00000561258 BRD3OSQ6XYD6 125 aa2.48□□□□□ -2.01
VPS13C-210ENST00000561258 PHF13Q86YI8 300 aaPredicted RBP2.48□□□□□ -2.01
VPS13C-210ENST00000561258 RPP25LQ8N5L8 163 aaKnown RBP2.48□□□□□ -2.01
VPS13C-210ENST00000561258 OR8B12Q8NGG6 310 aa2.48□□□□□ -2.01
VPS13C-210ENST00000561258 TSPAN32Q96QS1 320 aa2.48□□□□□ -2.01
VPS13C-210ENST00000561258 MIEN1Q9BRT3 115 aa2.48□□□□□ -2.01
VPS13C-210ENST00000561258 ZNF471Q9BX82 626 aaPredicted RBP2.48□□□□□ -2.01
VPS13C-210ENST00000561258 PCBD2Q9H0N5 130 aa2.48□□□□□ -2.01
VPS13C-210ENST00000561258 KMT2AQ03164 3969 aa2.48□□□□□ -2.01
VPS13C-210ENST00000561258 A0A0J9YX75 114 aa2.47□□□□□ -2.01
VPS13C-210ENST00000561258 TMEM269A0A1B0GVZ9 245 aa2.47□□□□□ -2.01
VPS13C-210ENST00000561258 A0A1W2PQD3 144 aa2.47□□□□□ -2.01
VPS13C-210ENST00000561258 ODF3BA8MYP8 253 aa2.47□□□□□ -2.01
VPS13C-210ENST00000561258 I3L521 148 aa2.47□□□□□ -2.01
VPS13C-210ENST00000561258 M0R233 179 aa2.47□□□□□ -2.01
VPS13C-210ENST00000561258 OR7C1O76099 320 aaPredicted RBP2.47□□□□□ -2.01
VPS13C-210ENST00000561258 ZNF705DP0CH99 300 aaPredicted RBP2.47□□□□□ -2.01
VPS13C-210ENST00000561258 ZNF728P0DKX0 622 aa2.47□□□□□ -2.01
VPS13C-210ENST00000561258 PLCXD2Q0VAA5 305 aa2.47□□□□□ -2.01
VPS13C-210ENST00000561258 Q6ZS49 121 aa2.47□□□□□ -2.01
VPS13C-210ENST00000561258 SBSPONQ8IVN8 264 aa2.47□□□□□ -2.01
VPS13C-210ENST00000561258 KRT222Q8N1A0 295 aa2.47□□□□□ -2.01
VPS13C-210ENST00000561258 SLC35F6Q8N357 371 aa2.47□□□□□ -2.01
VPS13C-210ENST00000561258 ANKRD29Q8N6D5 301 aa2.47□□□□□ -2.01
VPS13C-210ENST00000561258 ZNF675Q8TD23 568 aa2.47□□□□□ -2.01
VPS13C-210ENST00000561258 WDR61Q9GZS3 305 aaKnown RBP2.47□□□□□ -2.01
VPS13C-210ENST00000561258 RSL24D1Q9UHA3 163 aaKnown RBP2.47□□□□□ -2.01
VPS13C-210ENST00000561258 PKHD1P08F94 4074 aa2.47□□□□□ -2.01
VPS13C-210ENST00000561258 hADV38S2A0JD32 116 aa2.46□□□□□ -2.02
VPS13C-210ENST00000561258 C11orf86A6NJI1 115 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms