RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 LINC00869P0C866 280 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 STAG3L2P0CL84 134 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 C8orf88P0DMB2 117 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 APELAP0DMC3 54 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 BLCAPP62952 87 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 NDPQ00604 133 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 RUNX1Q01196 453 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 C15orf32Q32M92 178 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 KHDC3LQ587J8 217 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 KIAA2026Q5HYC2 2103 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 FAM74A1Q5RGS3 127 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 C10orf113Q5VZT2 155 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 MIC13Q5XKP0 118 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 ZNF600Q6ZNG1 722 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 NFE4Q86UQ8 179 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 COMMD7Q86VX2 200 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 RPP25LQ8N5L8 163 aaKnown RBP3.93□□□□□ -1.78
LDLR-209ENST00000558528 C20orf173Q96LM9 149 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 MAP1LC3BQ9GZQ8 125 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 EIF5A2Q9GZV4 153 aaKnown RBP3.93□□□□□ -1.78
LDLR-209ENST00000558528 SH3BGRL3Q9H299 93 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 FUT9Q9Y231 359 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 HIGD1AQ9Y241 93 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 ARL2-SNX15V9GYD0 113 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.92□□□□□ -1.78
LDLR-209ENST00000558528 TRBV7-9A0A0J9YWB2 115 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 MDFIC2A0A1B0GVS7 189 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 PSMB11A5LHX3 300 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 F6UZH7 168 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 G3V318 75 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 TGOLN2O43493 480 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 TCF21O43680 179 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 GGCTO75223 188 aaKnown RBP3.92□□□□□ -1.78
LDLR-209ENST00000558528 TSHBP01222 138 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 HSPB1P04792 205 aaKnown RBP3.92□□□□□ -1.78
LDLR-209ENST00000558528 OR5G3P0C626 314 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 IGLC1P0CG04 106 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 MEOX2P50222 304 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 MFAP2P55001 183 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 TPPP2P59282 170 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 HILS1P60008 231 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 DEFA6Q01524 100 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 GUK1Q16774 197 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 FAM78BQ5VT40 261 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 OR4F17Q8NGA8 305 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 OR4X2Q8NGF9 303 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 OR4F5Q8NH21 305 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 ZNF502Q8TBZ5 544 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 RPUSD4Q96CM3 377 aaKnown RBP3.92□□□□□ -1.78
LDLR-209ENST00000558528 C2orf48Q96LS8 159 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 FAM210AQ96ND0 272 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 GPR82Q96P67 336 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 OR4F4Q96R69 305 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 TCEAL7Q9BRU2 100 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 C16orf95Q9H693 158 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 VAX2Q9UIW0 290 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 PCLOQ9Y6V0 5065 aa3.92□□□□□ -1.78
LDLR-209ENST00000558528 ABCA1O95477 2261 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 HYDINQ4G0P3 5121 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 IGKV1D-37A0A075B6S9 117 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 IGKV1OR2-108A0A075B7D4 117 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 WI2-2373I1.2A0A1W2PRP0 233 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 RBFOX3A6NFN3 312 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 G3V4G9 280 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 NDUFA4O00483 81 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 RS1O15537 224 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 PDE6DO43924 150 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 CD5P06127 495 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 RPL7P18124 248 aaKnown RBP3.91□□□□□ -1.78
LDLR-209ENST00000558528 ORM2P19652 201 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 NPPCP23582 126 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 PSMB8P28062 276 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 LYZP61626 148 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 ZNF90Q03938 601 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 TIGITQ495A1 244 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 C1orf194Q5T5A4 169 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 ZNF343Q6P1L6 599 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 LCN15Q6UWW0 184 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 LINC00305Q7Z4B0 112 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 BPIFA4PQ86YQ2 179 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 LYPD1Q8N2G4 141 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 ZNF491Q8N8L2 437 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 OR1B1Q8NGR6 318 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 RPL36ALQ969Q0 106 aaKnown RBP3.91□□□□□ -1.78
LDLR-209ENST00000558528 UBE2E2Q96LR5 201 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 METTL26Q96S19 204 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 OR51M1Q9H341 326 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 ZNF702PQ9H963 129 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 TREM1Q9NP99 234 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 CLEC5AQ9NY25 188 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 MRPL27Q9P0M9 148 aaKnown RBP3.91□□□□□ -1.78
LDLR-209ENST00000558528 TMEM14CQ9P0S9 112 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 RABAC1Q9UI14 185 aa3.91□□□□□ -1.78
LDLR-209ENST00000558528 SOX21Q9Y651 276 aaPredicted RBP3.91□□□□□ -1.78
LDLR-209ENST00000558528 IGHV3-21A0A0B4J1V1 117 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 A0A1W2PRE2 83 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 TMEM218A2RU14 115 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 OR2T8A6NH00 312 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 DNAJC9-AS1A6NH13 148 aa3.9□□□□□ -1.79
LDLR-209ENST00000558528 TMEM250H0YL14 139 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms