RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 EXTL2Q9UBQ6 330 aa8.58□□□□□ -1.04
VPS29-211ENST00000553128 TP53TG3Q9ULZ0 132 aa8.58□□□□□ -1.04
VPS29-211ENST00000553128 H3BP45 60 aa8.57□□□□□ -1.04
VPS29-211ENST00000553128 ANXA7P20073 488 aaKnown RBP8.57□□□□□ -1.04
VPS29-211ENST00000553128 S100A7P31151 101 aa8.57□□□□□ -1.04
VPS29-211ENST00000553128 PLP1P60201 277 aa8.57□□□□□ -1.04
VPS29-211ENST00000553128 ZNF680Q8NEM1 530 aa8.57□□□□□ -1.04
VPS29-211ENST00000553128 Q9HAA7 133 aa8.57□□□□□ -1.04
VPS29-211ENST00000553128 RCL1Q9Y2P8 373 aaKnown RBP8.57□□□□□ -1.04
VPS29-211ENST00000553128 KCNIP3Q9Y2W7 256 aa8.57□□□□□ -1.04
VPS29-211ENST00000553128 SMCO3A2RU48 225 aa8.56□□□□□ -1.04
VPS29-211ENST00000553128 WRBO00258 174 aa8.56□□□□□ -1.04
VPS29-211ENST00000553128 SRIP30626 198 aa8.56□□□□□ -1.04
VPS29-211ENST00000553128 LEPP41159 167 aa8.56□□□□□ -1.04
VPS29-211ENST00000553128 TCL1AP56279 114 aa8.56□□□□□ -1.04
VPS29-211ENST00000553128 VBP1P61758 197 aa8.56□□□□□ -1.04
VPS29-211ENST00000553128 CD300CQ08708 224 aa8.56□□□□□ -1.04
VPS29-211ENST00000553128 ZNF415Q09FC8 603 aa8.56□□□□□ -1.04
VPS29-211ENST00000553128 BTN1A1Q13410 526 aa8.56□□□□□ -1.04
VPS29-211ENST00000553128 SPANXN5Q5MJ07 72 aa8.56□□□□□ -1.04
VPS29-211ENST00000553128 LCN15Q6UWW0 184 aa8.56□□□□□ -1.04
VPS29-211ENST00000553128 Q6ZQT7 251 aa8.56□□□□□ -1.04
VPS29-211ENST00000553128 OR51S1Q8NGJ8 323 aa8.56□□□□□ -1.04
VPS29-211ENST00000553128 SLC50A1Q9BRV3 221 aa8.56□□□□□ -1.04
VPS29-211ENST00000553128 ARL6Q9H0F7 186 aa8.56□□□□□ -1.04
VPS29-211ENST00000553128 DISC1C4P0D8 188 aa8.55□□□□□ -1.04
VPS29-211ENST00000553128 SFTA3P0C7M3 94 aa8.55□□□□□ -1.04
VPS29-211ENST00000553128 CXCL2P19875 107 aa8.55□□□□□ -1.04
VPS29-211ENST00000553128 ANXA2RQ3ZCQ2 193 aa8.55□□□□□ -1.04
VPS29-211ENST00000553128 MORN5Q5VZ52 161 aa8.55□□□□□ -1.04
VPS29-211ENST00000553128 C10orf126Q8N4M7 172 aa8.55□□□□□ -1.04
VPS29-211ENST00000553128 EIF4E3Q8N5X7 224 aaKnown RBP8.55□□□□□ -1.04
VPS29-211ENST00000553128 ODF3Q96PU9 254 aa8.55□□□□□ -1.04
VPS29-211ENST00000553128 VGLL1Q99990 258 aa8.55□□□□□ -1.04
VPS29-211ENST00000553128 MRPL32Q9BYC8 188 aaKnown RBP8.55□□□□□ -1.04
VPS29-211ENST00000553128 ARV1Q9H2C2 271 aa8.55□□□□□ -1.04
VPS29-211ENST00000553128 C7orf71A4D174 169 aa8.54□□□□□ -1.04
VPS29-211ENST00000553128 H3BQ15 152 aa8.54□□□□□ -1.04
VPS29-211ENST00000553128 GYPEP15421 78 aa8.54□□□□□ -1.04
VPS29-211ENST00000553128 HNRNPA3P51991 378 aaKnown RBP8.54□□□□□ -1.04
VPS29-211ENST00000553128 ERCC8Q13216 396 aa8.54□□□□□ -1.04
VPS29-211ENST00000553128 LRTM2Q8N967 370 aa8.54□□□□□ -1.04
VPS29-211ENST00000553128 ZNF479Q96JC4 524 aa8.54□□□□□ -1.04
VPS29-211ENST00000553128 IBA57-AS1B1ANH7 110 aa8.53□□□□□ -1.04
VPS29-211ENST00000553128 SYNGR2O43760 224 aa8.53□□□□□ -1.04
VPS29-211ENST00000553128 CCNKO75909 580 aa8.53□□□□□ -1.04
VPS29-211ENST00000553128 SLC25A5P05141 298 aaKnown RBP8.53□□□□□ -1.04
VPS29-211ENST00000553128 SLAQ13239 276 aa8.53□□□□□ -1.04
VPS29-211ENST00000553128 LINC00305Q7Z4B0 112 aa8.53□□□□□ -1.04
VPS29-211ENST00000553128 SAT2Q96F10 170 aaPredicted RBP8.53□□□□□ -1.04
VPS29-211ENST00000553128 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.52□□□□□ -1.05
VPS29-211ENST00000553128 TRGV4A0A0C4DH28 118 aa8.52□□□□□ -1.05
VPS29-211ENST00000553128 IGHV3-38A0A0C4DH36 116 aa8.52□□□□□ -1.05
VPS29-211ENST00000553128 LOC100131303A0A0U1RQF7 123 aa8.52□□□□□ -1.05
VPS29-211ENST00000553128 KLLNB2CW77 178 aa8.52□□□□□ -1.05
VPS29-211ENST00000553128 LECT2O14960 151 aa8.52□□□□□ -1.05
VPS29-211ENST00000553128 AKAIN1P0CW23 69 aa8.52□□□□□ -1.05
VPS29-211ENST00000553128 MT1HL1P0DM35 61 aa8.52□□□□□ -1.05
VPS29-211ENST00000553128 IGLC2P0DOY2 106 aa8.52□□□□□ -1.05
VPS29-211ENST00000553128 RNASE4P34096 147 aaKnown RBP8.52□□□□□ -1.05
VPS29-211ENST00000553128 RRAS2P62070 204 aaPredicted RBP8.52□□□□□ -1.05
VPS29-211ENST00000553128 RPP30P78346 268 aaKnown RBP8.52□□□□□ -1.05
VPS29-211ENST00000553128 SLC38A11Q08AI6 406 aa8.52□□□□□ -1.05
VPS29-211ENST00000553128 PRR9Q5T870 116 aa8.52□□□□□ -1.05
VPS29-211ENST00000553128 CLVS1Q8IUQ0 354 aaPredicted RBP8.52□□□□□ -1.05
VPS29-211ENST00000553128 FAM19A4Q96LR4 140 aa8.52□□□□□ -1.05
VPS29-211ENST00000553128 CIB3Q96Q77 187 aaPredicted RBP8.52□□□□□ -1.05
VPS29-211ENST00000553128 PRRT1Q99946 306 aa8.52□□□□□ -1.05
VPS29-211ENST00000553128 MIXL1Q9H2W2 232 aa8.52□□□□□ -1.05
VPS29-211ENST00000553128 MED6O75586 246 aa8.51□□□□□ -1.05
VPS29-211ENST00000553128 SSBP1Q04837 148 aaKnown RBP8.51□□□□□ -1.05
VPS29-211ENST00000553128 LINC01556Q5JQF7 62 aa8.51□□□□□ -1.05
VPS29-211ENST00000553128 IBA57Q5T440 356 aaKnown RBP8.51□□□□□ -1.05
VPS29-211ENST00000553128 MZT2AQ6P582 158 aa8.51□□□□□ -1.05
VPS29-211ENST00000553128 CIRBP-AS1Q8TBR5 109 aa8.51□□□□□ -1.05
VPS29-211ENST00000553128 FUNDC2Q9BWH2 189 aa8.51□□□□□ -1.05
VPS29-211ENST00000553128 STRAPQ9Y3F4 350 aaKnown RBP8.51□□□□□ -1.05
VPS29-211ENST00000553128 M0R3E3 92 aa8.5□□□□□ -1.05
VPS29-211ENST00000553128 MPDU1O75352 247 aa8.5□□□□□ -1.05
VPS29-211ENST00000553128 SELENOTP62341 195 aa8.5□□□□□ -1.05
VPS29-211ENST00000553128 SRPXP78539 464 aa8.5□□□□□ -1.05
VPS29-211ENST00000553128 OPCMLQ14982 345 aa8.5□□□□□ -1.05
VPS29-211ENST00000553128 BPIFA4PQ86YQ2 179 aa8.5□□□□□ -1.05
VPS29-211ENST00000553128 BLNKQ8WV28 456 aa8.5□□□□□ -1.05
VPS29-211ENST00000553128 SMIM4Q8WVI0 70 aa8.5□□□□□ -1.05
VPS29-211ENST00000553128 PCNPQ8WW12 178 aaKnown RBP8.5□□□□□ -1.05
VPS29-211ENST00000553128 TMEM37Q8WXS4 190 aa8.5□□□□□ -1.05
VPS29-211ENST00000553128 CHAC1Q9BUX1 264 aa8.5□□□□□ -1.05
VPS29-211ENST00000553128 Q9H521 79 aa8.5□□□□□ -1.05
VPS29-211ENST00000553128 PXMP4Q9Y6I8 212 aa8.5□□□□□ -1.05
VPS29-211ENST00000553128 TRAV5A0A0B4J249 113 aa8.49□□□□□ -1.05
VPS29-211ENST00000553128 IGHV3-30P01768 117 aa8.49□□□□□ -1.05
VPS29-211ENST00000553128 IGHV3-33P01772 117 aa8.49□□□□□ -1.05
VPS29-211ENST00000553128 OR4E1P0C645 316 aa8.49□□□□□ -1.05
VPS29-211ENST00000553128 IGHV3-30-3P0DP02 117 aa8.49□□□□□ -1.05
VPS29-211ENST00000553128 IGHV3-30-5P0DP03 117 aa8.49□□□□□ -1.05
VPS29-211ENST00000553128 SLC25A6P12236 298 aa8.49□□□□□ -1.05
VPS29-211ENST00000553128 ANXA3P12429 323 aa8.49□□□□□ -1.05
VPS29-211ENST00000553128 IQCF2Q8IXL9 164 aa8.49□□□□□ -1.05
VPS29-211ENST00000553128 C15orf40Q8WUR7 153 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms