RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 CCL21O00585 134 aa15.21■□□□□ 0.03
PCF11-203ENST00000530304 PCP4P48539 62 aa15.21■□□□□ 0.03
PCF11-203ENST00000530304 DYNAPQ8N1N2 210 aa15.21■□□□□ 0.03
PCF11-203ENST00000530304 OR2T8A6NH00 312 aa15.2■□□□□ 0.02
PCF11-203ENST00000530304 LOC389332A0A1B0GUA5 103 aa15.2■□□□□ 0.02
PCF11-203ENST00000530304 NCR2O95944 276 aa15.2■□□□□ 0.02
PCF11-203ENST00000530304 BVES-AS1Q5T3Y7 98 aa15.2■□□□□ 0.02
PCF11-203ENST00000530304 AMN1Q8IY45 258 aa15.2■□□□□ 0.02
PCF11-203ENST00000530304 THYN1Q9P016 225 aa15.2■□□□□ 0.02
PCF11-203ENST00000530304 RPL7P18124 248 aaKnown RBP15.19■□□□□ 0.02
PCF11-203ENST00000530304 LOXL1Q08397 574 aaPredicted RBP15.19■□□□□ 0.02
PCF11-203ENST00000530304 MUC21A0A0G2JKD1 596 aa15.19■□□□□ 0.02
PCF11-203ENST00000530304 MUC21A0A140T8X8 626 aa15.19■□□□□ 0.02
PCF11-203ENST00000530304 MUC21Q5SSG8 566 aa15.19■□□□□ 0.02
PCF11-203ENST00000530304 FAM104BQ5XKR9 115 aa15.19■□□□□ 0.02
PCF11-203ENST00000530304 PRR25Q96S07 402 aa15.19■□□□□ 0.02
PCF11-203ENST00000530304 SIGLEC8Q9NYZ4 499 aa15.19■□□□□ 0.02
PCF11-203ENST00000530304 U3KQK5 164 aa15.19■□□□□ 0.02
PCF11-203ENST00000530304 A0A096LNJ9 63 aa15.18■□□□□ 0.02
PCF11-203ENST00000530304 SAPCD1Q5SSQ6 148 aa15.18■□□□□ 0.02
PCF11-203ENST00000530304 COX8CQ7Z4L0 72 aa15.18■□□□□ 0.02
PCF11-203ENST00000530304 VMO1Q7Z5L0 202 aa15.18■□□□□ 0.02
PCF11-203ENST00000530304 PTPRZ1P23471 2315 aaPredicted RBP15.18■□□□□ 0.02
PCF11-203ENST00000530304 SVEP1Q4LDE5 3571 aa15.18■□□□□ 0.02
PCF11-203ENST00000530304 CTSGP08311 255 aa15.18■□□□□ 0.02
PCF11-203ENST00000530304 CCDC144NLQ6NUI1 221 aa15.18■□□□□ 0.02
PCF11-203ENST00000530304 PRELID3AQ96N28 172 aa15.18■□□□□ 0.02
PCF11-203ENST00000530304 EGR2P11161 476 aaPredicted RBP15.17■□□□□ 0.02
PCF11-203ENST00000530304 Q8N6K4 173 aa15.17■□□□□ 0.02
PCF11-203ENST00000530304 SMAD5-AS1Q9Y6J3 95 aa15.17■□□□□ 0.02
PCF11-203ENST00000530304 IGFL4Q6B9Z1 124 aa15.17■□□□□ 0.02
PCF11-203ENST00000530304 C12orf54Q6X4T0 127 aa15.17■□□□□ 0.02
PCF11-203ENST00000530304 ORMDL3Q8N138 153 aa15.17■□□□□ 0.02
PCF11-203ENST00000530304 Q8TAT8 98 aa15.17■□□□□ 0.02
PCF11-203ENST00000530304 CEP295Q9C0D2 2601 aa15.16■□□□□ 0.02
PCF11-203ENST00000530304 VGLL1Q99990 258 aa15.16■□□□□ 0.02
PCF11-203ENST00000530304 RABAC1Q9UI14 185 aa15.16■□□□□ 0.02
PCF11-203ENST00000530304 PTPRQQ9UMZ3 2332 aa15.16■□□□□ 0.02
PCF11-203ENST00000530304 A0A087X0K7 114 aa15.16■□□□□ 0.02
PCF11-203ENST00000530304 TAX1BP3O14907 124 aa15.16■□□□□ 0.02
PCF11-203ENST00000530304 ZNF80P51504 273 aaPredicted RBP15.16■□□□□ 0.02
PCF11-203ENST00000530304 MRPL51Q4U2R6 128 aaKnown RBP15.16■□□□□ 0.02
PCF11-203ENST00000530304 C11orf71Q6IPW1 123 aa15.16■□□□□ 0.02
PCF11-203ENST00000530304 IGHV2-70DA0A0C4DH43 119 aa15.15■□□□□ 0.02
PCF11-203ENST00000530304 ARL6IP6Q8N6S5 226 aa15.15■□□□□ 0.02
PCF11-203ENST00000530304 OR8A1Q8NGG7 326 aa15.15■□□□□ 0.02
PCF11-203ENST00000530304 MUC6Q6W4X9 2439 aa15.15■□□□□ 0.02
PCF11-203ENST00000530304 IGHG4P01861 327 aa15.15■□□□□ 0.02
PCF11-203ENST00000530304 COX8AP10176 69 aa15.15■□□□□ 0.02
PCF11-203ENST00000530304 HLA-DMBP28068 263 aa15.15■□□□□ 0.02
PCF11-203ENST00000530304 ERASQ7Z444 233 aa15.15■□□□□ 0.02
PCF11-203ENST00000530304 IGHV3OR16-8A0A075B7F1 116 aa15.14■□□□□ 0.01
PCF11-203ENST00000530304 TMEM11P17152 192 aa15.14■□□□□ 0.01
PCF11-203ENST00000530304 ADORA2A-AS1P86434 159 aa15.14■□□□□ 0.01
PCF11-203ENST00000530304 HIST1H1AQ02539 215 aaPredicted RBP15.14■□□□□ 0.01
PCF11-203ENST00000530304 EBI3Q14213 229 aa15.14■□□□□ 0.01
PCF11-203ENST00000530304 DEFB125Q8N687 156 aa15.14■□□□□ 0.01
PCF11-203ENST00000530304 IGHV7-81A0A0B4J1V7 117 aa15.14■□□□□ 0.01
PCF11-203ENST00000530304 TWIST1Q15672 202 aa15.14■□□□□ 0.01
PCF11-203ENST00000530304 VAMP3Q15836 100 aa15.14■□□□□ 0.01
PCF11-203ENST00000530304 C1orf122Q6ZSJ8 110 aa15.14■□□□□ 0.01
PCF11-203ENST00000530304 HRNRQ86YZ3 2850 aaPredicted RBP15.14■□□□□ 0.01
PCF11-203ENST00000530304 IGHV3-35A0A0C4DH35 117 aa15.13■□□□□ 0.01
PCF11-203ENST00000530304 ZNF575Q86XF7 245 aa15.13■□□□□ 0.01
PCF11-203ENST00000530304 FBLL1A6NHQ2 334 aaKnown RBP15.13■□□□□ 0.01
PCF11-203ENST00000530304 SCGB2A1O75556 95 aa15.13■□□□□ 0.01
PCF11-203ENST00000530304 BMI1P35226 326 aa15.13■□□□□ 0.01
PCF11-203ENST00000530304 FXYD7P58549 80 aa15.13■□□□□ 0.01
PCF11-203ENST00000530304 FER1L6-AS1Q8NA97 138 aa15.13■□□□□ 0.01
PCF11-203ENST00000530304 OOSP1A8MZH6 123 aa15.13■□□□□ 0.01
PCF11-203ENST00000530304 ZFP36P26651 326 aaKnown RBP15.13■□□□□ 0.01
PCF11-203ENST00000530304 GPR183P32249 361 aa15.13■□□□□ 0.01
PCF11-203ENST00000530304 FOXE3Q13461 319 aa15.13■□□□□ 0.01
PCF11-203ENST00000530304 PIP4P2Q8N4L2 257 aa15.13■□□□□ 0.01
PCF11-203ENST00000530304 SNAI2O43623 268 aa15.12■□□□□ 0.01
PCF11-203ENST00000530304 RPS20P60866 119 aaKnown RBP15.12■□□□□ 0.01
PCF11-203ENST00000530304 MINOS1Q5TGZ0 78 aa15.12■□□□□ 0.01
PCF11-203ENST00000530304 C2orf91Q6ZV80 131 aa15.12■□□□□ 0.01
PCF11-203ENST00000530304 MSRB2Q9Y3D2 182 aa15.12■□□□□ 0.01
PCF11-203ENST00000530304 MINOS1-NBL1R4GNA1 71 aa15.12■□□□□ 0.01
PCF11-203ENST00000530304 SMKR1H3BMG3 65 aa15.12■□□□□ 0.01
PCF11-203ENST00000530304 CKS2P33552 79 aa15.12■□□□□ 0.01
PCF11-203ENST00000530304 RHOGP84095 191 aa15.12■□□□□ 0.01
PCF11-203ENST00000530304 OR4C5Q8NGB2 326 aa15.12■□□□□ 0.01
PCF11-203ENST00000530304 IGLC6P0CF74 106 aa15.11■□□□□ 0.01
PCF11-203ENST00000530304 PAX8Q06710 450 aa15.11■□□□□ 0.01
PCF11-203ENST00000530304 Q8N9W7 124 aa15.11■□□□□ 0.01
PCF11-203ENST00000530304 RNASE8Q8TDE3 154 aaKnown RBP15.11■□□□□ 0.01
PCF11-203ENST00000530304 NPYP01303 97 aa15.1■□□□□ 0.01
PCF11-203ENST00000530304 HBDP02042 147 aa15.1■□□□□ 0.01
PCF11-203ENST00000530304 LGALS9BQ3B8N2 356 aa15.1■□□□□ 0.01
PCF11-203ENST00000530304 LGALS9CQ6DKI2 356 aa15.1■□□□□ 0.01
PCF11-203ENST00000530304 SPTA1P02549 2419 aa15.09■□□□□ 0.01
PCF11-203ENST00000530304 CBY3A6NI87 242 aa15.09■□□□□ 0.01
PCF11-203ENST00000530304 ORM1P02763 201 aa15.09■□□□□ 0.01
PCF11-203ENST00000530304 NHLH1Q02575 133 aa15.09■□□□□ 0.01
PCF11-203ENST00000530304 ANKRD39Q53RE8 183 aa15.09■□□□□ 0.01
PCF11-203ENST00000530304 K7EP13 123 aa15.09■□□□□ 0.01
PCF11-203ENST00000530304 C15orf32Q32M92 178 aa15.09■□□□□ 0.01
PCF11-203ENST00000530304 MSRB1Q9NZV6 116 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms