RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 TRAV8-1A0A0A6YYK1 113 aa13.06□□□□□ -0.32
PCDHA3-201ENST00000522353 WISP1O95388 367 aa13.06□□□□□ -0.32
PCDHA3-201ENST00000522353 CXCL1P09341 107 aa13.06□□□□□ -0.32
PCDHA3-201ENST00000522353 LYL1P12980 280 aa13.06□□□□□ -0.32
PCDHA3-201ENST00000522353 MLANAQ16655 118 aa13.06□□□□□ -0.32
PCDHA3-201ENST00000522353 LIME1Q9H400 295 aa13.06□□□□□ -0.32
PCDHA3-201ENST00000522353 MALRD1Q5VYJ5 2156 aa13.06□□□□□ -0.32
PCDHA3-201ENST00000522353 A0A0G2JRQ6 117 aa13.05□□□□□ -0.32
PCDHA3-201ENST00000522353 DEFB113Q30KQ7 82 aa13.05□□□□□ -0.32
PCDHA3-201ENST00000522353 IGFL2Q6UWQ7 119 aa13.05□□□□□ -0.32
PCDHA3-201ENST00000522353 Q6ZRM9 215 aa13.05□□□□□ -0.32
PCDHA3-201ENST00000522353 DMRTA1Q5VZB9 504 aa13.05□□□□□ -0.32
PCDHA3-201ENST00000522353 COLCA2A8K830 154 aa13.05□□□□□ -0.32
PCDHA3-201ENST00000522353 GGTLC3B5MD39 225 aa13.05□□□□□ -0.32
PCDHA3-201ENST00000522353 PAX4O43316 350 aa13.05□□□□□ -0.32
PCDHA3-201ENST00000522353 C17orf58Q2M2W7 97 aa13.05□□□□□ -0.32
PCDHA3-201ENST00000522353 ARTNQ5T4W7 220 aa13.05□□□□□ -0.32
PCDHA3-201ENST00000522353 IL17RELQ6ZVW7 336 aa13.05□□□□□ -0.32
PCDHA3-201ENST00000522353 CSTL1Q9H114 145 aa13.05□□□□□ -0.32
PCDHA3-201ENST00000522353 MRPL27Q9P0M9 148 aaKnown RBP13.05□□□□□ -0.32
PCDHA3-201ENST00000522353 TRAV8-2A0A0B4J237 113 aa13.05□□□□□ -0.32
PCDHA3-201ENST00000522353 IGKV1-6A0A0C4DH72 117 aa13.05□□□□□ -0.32
PCDHA3-201ENST00000522353 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.04□□□□□ -0.32
PCDHA3-201ENST00000522353 IGHV4-39P01824 125 aa13.04□□□□□ -0.32
PCDHA3-201ENST00000522353 HIST3H2BBQ8N257 126 aa13.04□□□□□ -0.32
PCDHA3-201ENST00000522353 NUP35Q8NFH5 326 aa13.04□□□□□ -0.32
PCDHA3-201ENST00000522353 C11orf68Q9H3H3 251 aaKnown RBP13.04□□□□□ -0.32
PCDHA3-201ENST00000522353 IGHV3-64A0A075B6Q5 118 aa13.04□□□□□ -0.32
PCDHA3-201ENST00000522353 TMEM95Q3KNT9 176 aa13.04□□□□□ -0.32
PCDHA3-201ENST00000522353 M0R2P5 195 aa13.04□□□□□ -0.32
PCDHA3-201ENST00000522353 ARMS2P0C7Q2 107 aa13.04□□□□□ -0.32
PCDHA3-201ENST00000522353 Q86TA4 180 aa13.04□□□□□ -0.32
PCDHA3-201ENST00000522353 ERG28Q9UKR5 140 aa13.03□□□□□ -0.32
PCDHA3-201ENST00000522353 WDR86Q86TI4 376 aa13.03□□□□□ -0.32
PCDHA3-201ENST00000522353 A0A1B0GV72 72 aa13.03□□□□□ -0.32
PCDHA3-201ENST00000522353 IGHV2-5P01817 119 aa13.03□□□□□ -0.32
PCDHA3-201ENST00000522353 SPINK13Q1W4C9 94 aa13.03□□□□□ -0.32
PCDHA3-201ENST00000522353 ZNF479Q96JC4 524 aa13.03□□□□□ -0.32
PCDHA3-201ENST00000522353 ZMAT4Q9H898 229 aa13.03□□□□□ -0.32
PCDHA3-201ENST00000522353 VPREB3Q9UKI3 123 aa13.03□□□□□ -0.32
PCDHA3-201ENST00000522353 CUL9Q8IWT3 2517 aa13.03□□□□□ -0.32
PCDHA3-201ENST00000522353 CACNA1AO00555 2505 aa13.03□□□□□ -0.32
PCDHA3-201ENST00000522353 A0A087WWL8 130 aa13.03□□□□□ -0.32
PCDHA3-201ENST00000522353 WT1P19544 449 aaPredicted RBP13.03□□□□□ -0.32
PCDHA3-201ENST00000522353 SFTA2Q6UW10 78 aa13.03□□□□□ -0.32
PCDHA3-201ENST00000522353 TRPT1Q86TN4 253 aaKnown RBP13.03□□□□□ -0.32
PCDHA3-201ENST00000522353 ATXN8Q156A1 80 aa13.02□□□□□ -0.33
PCDHA3-201ENST00000522353 ZNF503-AS2A6NEH8 195 aa13.02□□□□□ -0.33
PCDHA3-201ENST00000522353 H3BUA1 57 aa13.02□□□□□ -0.33
PCDHA3-201ENST00000522353 TRAV13-1A0A0B4J241 112 aa13.02□□□□□ -0.33
PCDHA3-201ENST00000522353 DUX4L9Q6RFH8 374 aaPredicted RBP13.02□□□□□ -0.33
PCDHA3-201ENST00000522353 SPOCK3Q9BQ16 436 aa13.02□□□□□ -0.33
PCDHA3-201ENST00000522353 YLPM1P49750 1951 aaKnown RBP13.01□□□□□ -0.33
PCDHA3-201ENST00000522353 SHISA9B4DS77 424 aa13.01□□□□□ -0.33
PCDHA3-201ENST00000522353 LY6G5BQ8NDX9 201 aa13.01□□□□□ -0.33
PCDHA3-201ENST00000522353 GFRA4Q9GZZ7 299 aa13.01□□□□□ -0.33
PCDHA3-201ENST00000522353 A8MWV9 139 aa13□□□□□ -0.33
PCDHA3-201ENST00000522353 DKK1O94907 266 aa13□□□□□ -0.33
PCDHA3-201ENST00000522353 TSSC4Q9Y5U2 329 aaPredicted RBP13□□□□□ -0.33
PCDHA3-201ENST00000522353 TP53BP1Q12888 1972 aaPredicted RBP13□□□□□ -0.33
PCDHA3-201ENST00000522353 EREGO14944 169 aa13□□□□□ -0.33
PCDHA3-201ENST00000522353 FNDC4Q9H6D8 234 aaPredicted RBP13□□□□□ -0.33
PCDHA3-201ENST00000522353 A0A1B0GUS0 222 aa12.99□□□□□ -0.33
PCDHA3-201ENST00000522353 PFN1P07737 140 aaKnown RBP12.99□□□□□ -0.33
PCDHA3-201ENST00000522353 IGHV1OR15-1A0A075B7D0 117 aa12.99□□□□□ -0.33
PCDHA3-201ENST00000522353 F8WEM9 126 aa12.99□□□□□ -0.33
PCDHA3-201ENST00000522353 CDKN1BP46527 198 aa12.99□□□□□ -0.33
PCDHA3-201ENST00000522353 TMEM75Q8N9X5 138 aa12.99□□□□□ -0.33
PCDHA3-201ENST00000522353 DEFB112Q30KQ8 113 aa12.99□□□□□ -0.33
PCDHA3-201ENST00000522353 SPG11Q96JI7 2443 aa12.99□□□□□ -0.33
PCDHA3-201ENST00000522353 KIAA1671Q9BY89 1806 aa12.99□□□□□ -0.33
PCDHA3-201ENST00000522353 K7EM74 188 aa12.99□□□□□ -0.33
PCDHA3-201ENST00000522353 NDUFS7O75251 213 aa12.98□□□□□ -0.33
PCDHA3-201ENST00000522353 SHANK1Q9Y566 2161 aa12.98□□□□□ -0.33
PCDHA3-201ENST00000522353 MYMXA0A1B0GTQ4 84 aa12.98□□□□□ -0.33
PCDHA3-201ENST00000522353 IGHV2-70P01814 119 aa12.98□□□□□ -0.33
PCDHA3-201ENST00000522353 GRNP28799 593 aaKnown RBP12.98□□□□□ -0.33
PCDHA3-201ENST00000522353 PCP4P48539 62 aa12.98□□□□□ -0.33
PCDHA3-201ENST00000522353 SSBP2P81877 361 aaPredicted RBP12.98□□□□□ -0.33
PCDHA3-201ENST00000522353 RMI2Q96E14 147 aa12.98□□□□□ -0.33
PCDHA3-201ENST00000522353 TRBV25-1A0A075B6N4 114 aa12.98□□□□□ -0.33
PCDHA3-201ENST00000522353 PRB1P04280 392 aa12.98□□□□□ -0.33
PCDHA3-201ENST00000522353 C8orf86Q6ZUL3 223 aa12.98□□□□□ -0.33
PCDHA3-201ENST00000522353 C22orf46C9J442 243 aa12.98□□□□□ -0.33
PCDHA3-201ENST00000522353 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.98□□□□□ -0.33
PCDHA3-201ENST00000522353 TRBV19A0A075B6N1 114 aa12.97□□□□□ -0.33
PCDHA3-201ENST00000522353 GAGE12JA6NER3 117 aa12.97□□□□□ -0.33
PCDHA3-201ENST00000522353 KNCNA6PVL3 124 aa12.97□□□□□ -0.33
PCDHA3-201ENST00000522353 C15orf65H3BRN8 121 aa12.97□□□□□ -0.33
PCDHA3-201ENST00000522353 ZNF561-AS1K7EIQ3 104 aa12.97□□□□□ -0.33
PCDHA3-201ENST00000522353 AZU1P20160 251 aa12.97□□□□□ -0.33
PCDHA3-201ENST00000522353 GAGE1Q13065 139 aa12.97□□□□□ -0.33
PCDHA3-201ENST00000522353 GAGE4Q13068 117 aa12.97□□□□□ -0.33
PCDHA3-201ENST00000522353 GAGE5Q13069 117 aa12.97□□□□□ -0.33
PCDHA3-201ENST00000522353 GAGE13Q4V321 117 aa12.97□□□□□ -0.33
PCDHA3-201ENST00000522353 TMEM158Q8WZ71 300 aa12.97□□□□□ -0.33
PCDHA3-201ENST00000522353 CDK2AP2O75956 126 aa12.97□□□□□ -0.33
PCDHA3-201ENST00000522353 HAPLN4Q86UW8 402 aa12.97□□□□□ -0.33
PCDHA3-201ENST00000522353 ZNF492Q9P255 531 aa12.97□□□□□ -0.33
PCDHA3-201ENST00000522353 SAMD5Q5TGI4 173 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms