RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 KRTAP29-1A8MX34 341 aaPredicted RBP13.71□□□□□ -0.21
SQSTM1-215ENST00000514093 NPIPB6E9PJ23 425 aa13.71□□□□□ -0.21
SQSTM1-215ENST00000514093 CXCL2P19875 107 aa13.71□□□□□ -0.21
SQSTM1-215ENST00000514093 LEPP41159 167 aa13.71□□□□□ -0.21
SQSTM1-215ENST00000514093 TEPPQ6URK8 271 aa13.71□□□□□ -0.21
SQSTM1-215ENST00000514093 WFDC10BQ8IUB3 73 aa13.71□□□□□ -0.21
SQSTM1-215ENST00000514093 LINC00467Q9BRT7 94 aa13.71□□□□□ -0.21
SQSTM1-215ENST00000514093 FAM30AQ9NZY2 134 aa13.71□□□□□ -0.21
SQSTM1-215ENST00000514093 CTDSPLO15194 276 aa13.7□□□□□ -0.22
SQSTM1-215ENST00000514093 PRAF2O60831 178 aa13.7□□□□□ -0.22
SQSTM1-215ENST00000514093 CCNKO75909 580 aa13.7□□□□□ -0.22
SQSTM1-215ENST00000514093 HOXB5P09067 269 aa13.7□□□□□ -0.22
SQSTM1-215ENST00000514093 VAMP1P23763 118 aa13.7□□□□□ -0.22
SQSTM1-215ENST00000514093 SELENOTP62341 195 aa13.7□□□□□ -0.22
SQSTM1-215ENST00000514093 LINC00305Q7Z4B0 112 aa13.7□□□□□ -0.22
SQSTM1-215ENST00000514093 RABL2BQ9UNT1 228 aa13.7□□□□□ -0.22
SQSTM1-215ENST00000514093 SPINK4O60575 86 aa13.69□□□□□ -0.22
SQSTM1-215ENST00000514093 SLC38A11Q08AI6 406 aa13.69□□□□□ -0.22
SQSTM1-215ENST00000514093 S100A7AQ86SG5 101 aa13.69□□□□□ -0.22
SQSTM1-215ENST00000514093 LRTM2Q8N967 370 aa13.69□□□□□ -0.22
SQSTM1-215ENST00000514093 ZNF680Q8NEM1 530 aa13.69□□□□□ -0.22
SQSTM1-215ENST00000514093 DIRAS2Q96HU8 199 aa13.69□□□□□ -0.22
SQSTM1-215ENST00000514093 C8orf49Q96NF6 230 aa13.69□□□□□ -0.22
SQSTM1-215ENST00000514093 PIGBOS1A0A0B4J2F0 54 aa13.68□□□□□ -0.22
SQSTM1-215ENST00000514093 CRYBA4P53673 196 aa13.68□□□□□ -0.22
SQSTM1-215ENST00000514093 ST6GAL2Q96JF0 529 aa13.68□□□□□ -0.22
SQSTM1-215ENST00000514093 MRPL16Q9NX20 251 aaKnown RBP13.68□□□□□ -0.22
SQSTM1-215ENST00000514093 PRO0255Q9UI72 69 aa13.68□□□□□ -0.22
SQSTM1-215ENST00000514093 HHLA3Q9XRX5 114 aa13.68□□□□□ -0.22
SQSTM1-215ENST00000514093 EVI2AP22794 236 aa13.67□□□□□ -0.22
SQSTM1-215ENST00000514093 POLR2GP62487 172 aaKnown RBP eCLIP13.67□□□□□ -0.22
SQSTM1-215ENST00000514093 MRPL23Q16540 153 aaKnown RBP13.67□□□□□ -0.22
SQSTM1-215ENST00000514093 TMEM128Q5BJH2 165 aa13.67□□□□□ -0.22
SQSTM1-215ENST00000514093 MORN5Q5VZ52 161 aa13.67□□□□□ -0.22
SQSTM1-215ENST00000514093 NEGR1Q7Z3B1 354 aa13.67□□□□□ -0.22
SQSTM1-215ENST00000514093 BPIFA4PQ86YQ2 179 aa13.67□□□□□ -0.22
SQSTM1-215ENST00000514093 ODF3Q96PU9 254 aa13.67□□□□□ -0.22
SQSTM1-215ENST00000514093 PSENENQ9NZ42 101 aa13.67□□□□□ -0.22
SQSTM1-215ENST00000514093 LRP1Q07954 4544 aaKnown RBP13.66□□□□□ -0.22
SQSTM1-215ENST00000514093 C7orf71A4D174 169 aa13.66□□□□□ -0.22
SQSTM1-215ENST00000514093 H3BQ15 152 aa13.66□□□□□ -0.22
SQSTM1-215ENST00000514093 CD300CQ08708 224 aa13.66□□□□□ -0.22
SQSTM1-215ENST00000514093 ERCC8Q13216 396 aa13.66□□□□□ -0.22
SQSTM1-215ENST00000514093 BTN1A1Q13410 526 aa13.66□□□□□ -0.22
SQSTM1-215ENST00000514093 FHL2Q14192 279 aa13.66□□□□□ -0.22
SQSTM1-215ENST00000514093 EIF4E3Q8N5X7 224 aaKnown RBP13.66□□□□□ -0.22
SQSTM1-215ENST00000514093 NPVFQ9HCQ7 196 aa13.66□□□□□ -0.22
SQSTM1-215ENST00000514093 TP53TG3Q9ULZ0 132 aa13.66□□□□□ -0.22
SQSTM1-215ENST00000514093 LRCOL1A6NCL2 159 aa13.65□□□□□ -0.22
SQSTM1-215ENST00000514093 E5RGE8 158 aa13.65□□□□□ -0.22
SQSTM1-215ENST00000514093 SLC25A5P05141 298 aaKnown RBP13.65□□□□□ -0.22
SQSTM1-215ENST00000514093 SERTAD4-AS1Q5TG53 156 aa13.65□□□□□ -0.22
SQSTM1-215ENST00000514093 SAT2Q96F10 170 aaPredicted RBP13.65□□□□□ -0.22
SQSTM1-215ENST00000514093 RNF24Q9Y225 148 aa13.65□□□□□ -0.22
SQSTM1-215ENST00000514093 PXMP4Q9Y6I8 212 aa13.65□□□□□ -0.22
SQSTM1-215ENST00000514093 GOSR2O14653 212 aa13.64□□□□□ -0.23
SQSTM1-215ENST00000514093 PLA2G1BP04054 148 aaKnown RBP13.64□□□□□ -0.23
SQSTM1-215ENST00000514093 METTL15P1P0C7V9 234 aa13.64□□□□□ -0.23
SQSTM1-215ENST00000514093 IGLC2P0DOY2 106 aa13.64□□□□□ -0.23
SQSTM1-215ENST00000514093 RNASE4P34096 147 aaKnown RBP13.64□□□□□ -0.23
SQSTM1-215ENST00000514093 TCL1AP56279 114 aa13.64□□□□□ -0.23
SQSTM1-215ENST00000514093 OPCMLQ14982 345 aa13.64□□□□□ -0.23
SQSTM1-215ENST00000514093 ANXA2RQ3ZCQ2 193 aa13.64□□□□□ -0.23
SQSTM1-215ENST00000514093 SYT8Q8NBV8 401 aa13.64□□□□□ -0.23
SQSTM1-215ENST00000514093 TMEM37Q8WXS4 190 aa13.64□□□□□ -0.23
SQSTM1-215ENST00000514093 CCDC59Q9P031 241 aaKnown RBP13.64□□□□□ -0.23
SQSTM1-215ENST00000514093 K7EPK0 472 aa13.63□□□□□ -0.23
SQSTM1-215ENST00000514093 PSCAO43653 123 aa13.63□□□□□ -0.23
SQSTM1-215ENST00000514093 SSSCA1O60232 199 aa13.63□□□□□ -0.23
SQSTM1-215ENST00000514093 SFT2D2O95562 160 aa13.63□□□□□ -0.23
SQSTM1-215ENST00000514093 CRYGDP07320 174 aa13.63□□□□□ -0.23
SQSTM1-215ENST00000514093 PPP1R1AQ13522 171 aa13.63□□□□□ -0.23
SQSTM1-215ENST00000514093 NTN5Q8WTR8 489 aaPredicted RBP13.63□□□□□ -0.23
SQSTM1-215ENST00000514093 TRAV5A0A0B4J249 113 aa13.62□□□□□ -0.23
SQSTM1-215ENST00000514093 K7EQD1 137 aa13.62□□□□□ -0.23
SQSTM1-215ENST00000514093 COX7A2P2O60397 106 aa13.62□□□□□ -0.23
SQSTM1-215ENST00000514093 ID3Q02535 119 aa13.62□□□□□ -0.23
SQSTM1-215ENST00000514093 SLAQ13239 276 aa13.62□□□□□ -0.23
SQSTM1-215ENST00000514093 Q6ZQT7 251 aa13.62□□□□□ -0.23
SQSTM1-215ENST00000514093 KLLNB2CW77 178 aa13.61□□□□□ -0.23
SQSTM1-215ENST00000514093 K7EP13 123 aa13.61□□□□□ -0.23
SQSTM1-215ENST00000514093 AGPAT2O15120 278 aa13.61□□□□□ -0.23
SQSTM1-215ENST00000514093 SRIP30626 198 aa13.61□□□□□ -0.23
SQSTM1-215ENST00000514093 SPCS2Q15005 226 aa13.61□□□□□ -0.23
SQSTM1-215ENST00000514093 PXDC1Q5TGL8 231 aa13.61□□□□□ -0.23
SQSTM1-215ENST00000514093 LINC00528Q8N1L1 170 aa13.61□□□□□ -0.23
SQSTM1-215ENST00000514093 Q8N814 137 aa13.61□□□□□ -0.23
SQSTM1-215ENST00000514093 DEFB104AQ8WTQ1 72 aa13.61□□□□□ -0.23
SQSTM1-215ENST00000514093 VGLL1Q99990 258 aa13.61□□□□□ -0.23
SQSTM1-215ENST00000514093 MRPL32Q9BYC8 188 aaKnown RBP13.61□□□□□ -0.23
SQSTM1-215ENST00000514093 MGAT4CQ9UBM8 478 aa13.61□□□□□ -0.23
SQSTM1-215ENST00000514093 TRGV4A0A0C4DH28 118 aa13.6□□□□□ -0.23
SQSTM1-215ENST00000514093 M0R3E3 92 aa13.6□□□□□ -0.23
SQSTM1-215ENST00000514093 MPDU1O75352 247 aa13.6□□□□□ -0.23
SQSTM1-215ENST00000514093 ZNF415Q09FC8 603 aa13.6□□□□□ -0.23
SQSTM1-215ENST00000514093 C10orf113Q5VZT2 155 aa13.6□□□□□ -0.23
SQSTM1-215ENST00000514093 ZNF546Q86UE3 836 aa13.6□□□□□ -0.23
SQSTM1-215ENST00000514093 RABL2AQ9UBK7 228 aaPredicted RBP13.6□□□□□ -0.23
SQSTM1-215ENST00000514093 SFTA3P0C7M3 94 aa13.59□□□□□ -0.23
SQSTM1-215ENST00000514093 TMEM14EPQ6UXP3 125 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 200.8 ms