RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 ZNF705BP0CI00 300 aaPredicted RBP11.07□□□□□ -0.64
NUP54-213ENST00000513352 UBE2G2P60604 165 aa11.07□□□□□ -0.64
NUP54-213ENST00000513352 HIST1H1AQ02539 215 aaPredicted RBP11.07□□□□□ -0.64
NUP54-213ENST00000513352 GDF5OSQ5U4N7 250 aa11.07□□□□□ -0.64
NUP54-213ENST00000513352 FOXI2Q6ZQN5 318 aa11.07□□□□□ -0.64
NUP54-213ENST00000513352 OR4B1Q8NGF8 309 aa11.07□□□□□ -0.64
NUP54-213ENST00000513352 SAV1Q9H4B6 383 aaPredicted RBP11.07□□□□□ -0.64
NUP54-213ENST00000513352 RPH3ALQ9UNE2 315 aa11.07□□□□□ -0.64
NUP54-213ENST00000513352 PRELID1Q9Y255 219 aa11.07□□□□□ -0.64
NUP54-213ENST00000513352 TEX46H3BTG2 121 aa11.06□□□□□ -0.64
NUP54-213ENST00000513352 M0R3E3 92 aa11.06□□□□□ -0.64
NUP54-213ENST00000513352 CSN1S1P47710 185 aa11.06□□□□□ -0.64
NUP54-213ENST00000513352 CMTM2Q8TAZ6 248 aa11.06□□□□□ -0.64
NUP54-213ENST00000513352 MBD3L1Q8WWY6 194 aa11.06□□□□□ -0.64
NUP54-213ENST00000513352 OTORQ9NRC9 128 aa11.06□□□□□ -0.64
NUP54-213ENST00000513352 A0A0J9YX75 114 aa11.05□□□□□ -0.64
NUP54-213ENST00000513352 PGPA6NDG6 321 aa11.05□□□□□ -0.64
NUP54-213ENST00000513352 A8MZ25 164 aa11.05□□□□□ -0.64
NUP54-213ENST00000513352 HLA-DRB4P13762 266 aa11.05□□□□□ -0.64
NUP54-213ENST00000513352 LYPD1Q8N2G4 141 aa11.05□□□□□ -0.64
NUP54-213ENST00000513352 OR10J6PQ8NGY7 276 aa11.05□□□□□ -0.64
NUP54-213ENST00000513352 MRPL53Q96EL3 112 aaKnown RBP11.05□□□□□ -0.64
NUP54-213ENST00000513352 ASCL2Q99929 193 aa11.05□□□□□ -0.64
NUP54-213ENST00000513352 PPP1R14DQ9NXH3 145 aa11.05□□□□□ -0.64
NUP54-213ENST00000513352 HLA-DRB4X5D2U9 266 aa11.05□□□□□ -0.64
NUP54-213ENST00000513352 DNAH3Q8TD57 4116 aa11.04□□□□□ -0.64
NUP54-213ENST00000513352 H3BMM0 161 aa11.04□□□□□ -0.64
NUP54-213ENST00000513352 DUSP14O95147 198 aaKnown RBP11.04□□□□□ -0.64
NUP54-213ENST00000513352 HBE1P02100 147 aa11.04□□□□□ -0.64
NUP54-213ENST00000513352 SLC25A5P05141 298 aaKnown RBP11.04□□□□□ -0.64
NUP54-213ENST00000513352 APOC4P55056 127 aa11.04□□□□□ -0.64
NUP54-213ENST00000513352 TRPT1Q86TN4 253 aaKnown RBP11.04□□□□□ -0.64
NUP54-213ENST00000513352 OR8A1Q8NGG7 326 aa11.04□□□□□ -0.64
NUP54-213ENST00000513352 FBN3Q75N90 2809 aa11.04□□□□□ -0.64
NUP54-213ENST00000513352 MEGF8Q7Z7M0 2845 aa11.04□□□□□ -0.64
NUP54-213ENST00000513352 IGKV2-40A0A087WW87 121 aaPredicted RBP11.03□□□□□ -0.64
NUP54-213ENST00000513352 PRAC2D3DTV9 90 aa11.03□□□□□ -0.64
NUP54-213ENST00000513352 IGKV2D-40P01614 121 aaPredicted RBP11.03□□□□□ -0.64
NUP54-213ENST00000513352 CNN1P51911 297 aaKnown RBP11.03□□□□□ -0.64
NUP54-213ENST00000513352 FXYD7P58549 80 aa11.03□□□□□ -0.64
NUP54-213ENST00000513352 BLOC1S1P78537 153 aa11.03□□□□□ -0.64
NUP54-213ENST00000513352 CST9LP1Q5W188 147 aa11.03□□□□□ -0.64
NUP54-213ENST00000513352 SUN5Q8TC36 379 aa11.03□□□□□ -0.64
NUP54-213ENST00000513352 YTHDF2Q9Y5A9 579 aaKnown RBP11.03□□□□□ -0.64
NUP54-213ENST00000513352 CA1P00915 261 aaPredicted RBP11.02□□□□□ -0.65
NUP54-213ENST00000513352 IFNA7P01567 189 aa11.02□□□□□ -0.65
NUP54-213ENST00000513352 SUMO1P63165 101 aaKnown RBP11.02□□□□□ -0.65
NUP54-213ENST00000513352 GNG5P63218 68 aa11.02□□□□□ -0.65
NUP54-213ENST00000513352 TEX261Q6UWH6 196 aa11.02□□□□□ -0.65
NUP54-213ENST00000513352 RXFP4Q8TDU9 374 aa11.02□□□□□ -0.65
NUP54-213ENST00000513352 GNG13Q9P2W3 67 aa11.02□□□□□ -0.65
NUP54-213ENST00000513352 A0A1W2PRE2 83 aa11.01□□□□□ -0.65
NUP54-213ENST00000513352 FAM74A7A6NL05 159 aa11.01□□□□□ -0.65
NUP54-213ENST00000513352 GGTLC3B5MD39 225 aa11.01□□□□□ -0.65
NUP54-213ENST00000513352 PAGE4O60829 102 aa11.01□□□□□ -0.65
NUP54-213ENST00000513352 PPT1P50897 306 aa11.01□□□□□ -0.65
NUP54-213ENST00000513352 NUTF2P61970 127 aaKnown RBP11.01□□□□□ -0.65
NUP54-213ENST00000513352 ERCC8Q13216 396 aa11.01□□□□□ -0.65
NUP54-213ENST00000513352 HAGHQ16775 308 aa11.01□□□□□ -0.65
NUP54-213ENST00000513352 MORN3Q6PF18 240 aaPredicted RBP11.01□□□□□ -0.65
NUP54-213ENST00000513352 SBSPONQ8IVN8 264 aa11.01□□□□□ -0.65
NUP54-213ENST00000513352 ZNF680Q8NEM1 530 aa11.01□□□□□ -0.65
NUP54-213ENST00000513352 B9D2Q9BPU9 175 aa11.01□□□□□ -0.65
NUP54-213ENST00000513352 CSTL1Q9H114 145 aa11.01□□□□□ -0.65
NUP54-213ENST00000513352 TRAV1-1A0A0B4J248 108 aa11□□□□□ -0.65
NUP54-213ENST00000513352 KIR2DL5BA0A0G2JN68 375 aa11□□□□□ -0.65
NUP54-213ENST00000513352 KIR2DL5BA0A0G2JPC4 375 aa11□□□□□ -0.65
NUP54-213ENST00000513352 CCL20P78556 96 aa11□□□□□ -0.65
NUP54-213ENST00000513352 LINC00322Q6ZN03 302 aaPredicted RBP11□□□□□ -0.65
NUP54-213ENST00000513352 GOLT1AQ6ZVE7 132 aa11□□□□□ -0.65
NUP54-213ENST00000513352 KIR2DL5AQ8N109 375 aa11□□□□□ -0.65
NUP54-213ENST00000513352 C5orf17Q8NAS9 161 aa11□□□□□ -0.65
NUP54-213ENST00000513352 KIR2DL5BQ8NHK3 375 aa11□□□□□ -0.65
NUP54-213ENST00000513352 DIRC3C9JPN6 131 aa10.99□□□□□ -0.65
NUP54-213ENST00000513352 IFNA1P01562 189 aa10.99□□□□□ -0.65
NUP54-213ENST00000513352 ATP5G3P48201 142 aa10.99□□□□□ -0.65
NUP54-213ENST00000513352 TMEM78Q5T7P6 136 aa10.99□□□□□ -0.65
NUP54-213ENST00000513352 SLC35B3Q9H1N7 401 aa10.99□□□□□ -0.65
NUP54-213ENST00000513352 MANBALQ9NQG1 85 aa10.99□□□□□ -0.65
NUP54-213ENST00000513352 XCL2Q9UBD3 114 aa10.99□□□□□ -0.65
NUP54-213ENST00000513352 NPIPB6E9PJ23 425 aa10.98□□□□□ -0.65
NUP54-213ENST00000513352 J3KRW8 73 aa10.98□□□□□ -0.65
NUP54-213ENST00000513352 K7EQM0 130 aa10.98□□□□□ -0.65
NUP54-213ENST00000513352 M0R2Z0 102 aa10.98□□□□□ -0.65
NUP54-213ENST00000513352 UBE2CO00762 179 aa10.98□□□□□ -0.65
NUP54-213ENST00000513352 SPINK13Q1W4C9 94 aa10.98□□□□□ -0.65
NUP54-213ENST00000513352 DEFB135Q30KP9 77 aa10.98□□□□□ -0.65
NUP54-213ENST00000513352 PCNPQ8WW12 178 aaKnown RBP10.98□□□□□ -0.65
NUP54-213ENST00000513352 VGLL1Q99990 258 aa10.98□□□□□ -0.65
NUP54-213ENST00000513352 NKX6-2Q9C056 277 aaPredicted RBP10.98□□□□□ -0.65
NUP54-213ENST00000513352 RETNQ9HD89 108 aa10.98□□□□□ -0.65
NUP54-213ENST00000513352 ARL2-SNX15V9GYD0 113 aa10.98□□□□□ -0.65
NUP54-213ENST00000513352 Q8TAT8 98 aa10.97□□□□□ -0.65
NUP54-213ENST00000513352 CLUHP3Q96NS8 147 aa10.97□□□□□ -0.65
NUP54-213ENST00000513352 ZMAT4Q9H898 229 aa10.97□□□□□ -0.65
NUP54-213ENST00000513352 EPDR1Q9UM22 224 aa10.97□□□□□ -0.65
NUP54-213ENST00000513352 RBAKDNA6NC62 111 aa10.96□□□□□ -0.65
NUP54-213ENST00000513352 A8MTW9 85 aa10.96□□□□□ -0.65
NUP54-213ENST00000513352 C11orf94C9JXX5 98 aa10.96□□□□□ -0.65
NUP54-213ENST00000513352 PEX7O00628 323 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms