RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 COX8AP10176 69 aa10.09□□□□□ -0.79
VPS52-218ENST00000482399 ARL3P36405 182 aa10.09□□□□□ -0.79
VPS52-218ENST00000482399 GTSCR1Q86UQ5 136 aa10.09□□□□□ -0.79
VPS52-218ENST00000482399 MLST8Q9BVC4 326 aa10.09□□□□□ -0.79
VPS52-218ENST00000482399 NCOR2Q9Y618 2525 aa10.09□□□□□ -0.79
VPS52-218ENST00000482399 K7ERJ3 54 aa10.09□□□□□ -0.79
VPS52-218ENST00000482399 IGLV2-23P01705 113 aa10.09□□□□□ -0.79
VPS52-218ENST00000482399 RPL11P62913 178 aaKnown RBP10.09□□□□□ -0.79
VPS52-218ENST00000482399 ECSCRQ19T08 205 aa10.09□□□□□ -0.79
VPS52-218ENST00000482399 OR4A5Q8NH83 315 aa10.09□□□□□ -0.79
VPS52-218ENST00000482399 FOXC2Q99958 501 aa10.09□□□□□ -0.79
VPS52-218ENST00000482399 MS4A6AQ9H2W1 248 aa10.09□□□□□ -0.79
VPS52-218ENST00000482399 MSRB1Q9NZV6 116 aa10.09□□□□□ -0.79
VPS52-218ENST00000482399 PTPRBP23467 1997 aa10.08□□□□□ -0.8
VPS52-218ENST00000482399 HBDP02042 147 aa10.08□□□□□ -0.8
VPS52-218ENST00000482399 LEPP41159 167 aa10.08□□□□□ -0.8
VPS52-218ENST00000482399 C1RLQ9NZP8 487 aa10.08□□□□□ -0.8
VPS52-218ENST00000482399 C19orf71A6NCJ1 209 aa10.08□□□□□ -0.8
VPS52-218ENST00000482399 SH2D1AO60880 128 aa10.08□□□□□ -0.8
VPS52-218ENST00000482399 FER1L6-AS1Q8NA97 138 aa10.08□□□□□ -0.8
VPS52-218ENST00000482399 PTPRQQ9UMZ3 2332 aa10.07□□□□□ -0.8
VPS52-218ENST00000482399 PSG3Q16557 428 aa10.07□□□□□ -0.8
VPS52-218ENST00000482399 TRBV19A0A075B6N1 114 aa10.07□□□□□ -0.8
VPS52-218ENST00000482399 A0A0G2JNJ9 132 aa10.07□□□□□ -0.8
VPS52-218ENST00000482399 HAX1O00165 279 aa10.07□□□□□ -0.8
VPS52-218ENST00000482399 NPYP01303 97 aa10.07□□□□□ -0.8
VPS52-218ENST00000482399 IGKV1-17P01599 117 aa10.07□□□□□ -0.8
VPS52-218ENST00000482399 PRSS22Q9GZN4 317 aa10.07□□□□□ -0.8
VPS52-218ENST00000482399 ZNF492Q9P255 531 aa10.07□□□□□ -0.8
VPS52-218ENST00000482399 Q9UFV3 132 aa10.07□□□□□ -0.8
VPS52-218ENST00000482399 GATA1P15976 413 aaPredicted RBP10.07□□□□□ -0.8
VPS52-218ENST00000482399 TMEM30BQ3MIR4 351 aa10.07□□□□□ -0.8
VPS52-218ENST00000482399 KLF12Q9Y4X4 402 aa10.07□□□□□ -0.8
VPS52-218ENST00000482399 C2CD3Q4AC94 2353 aa10.06□□□□□ -0.8
VPS52-218ENST00000482399 SPRY2O43597 315 aa10.06□□□□□ -0.8
VPS52-218ENST00000482399 ASCL5Q7RTU5 278 aa10.06□□□□□ -0.8
VPS52-218ENST00000482399 C7orf69Q9H7B7 122 aa10.06□□□□□ -0.8
VPS52-218ENST00000482399 CUL9Q8IWT3 2517 aa10.06□□□□□ -0.8
VPS52-218ENST00000482399 ERCC8Q13216 396 aa10.06□□□□□ -0.8
VPS52-218ENST00000482399 TEX36Q5VZQ5 186 aa10.06□□□□□ -0.8
VPS52-218ENST00000482399 MAP1LC3AQ9H492 121 aa10.06□□□□□ -0.8
VPS52-218ENST00000482399 SEC11AP67812 179 aa10.05□□□□□ -0.8
VPS52-218ENST00000482399 MRPL51Q4U2R6 128 aaKnown RBP10.05□□□□□ -0.8
VPS52-218ENST00000482399 CT83Q5H943 113 aa10.05□□□□□ -0.8
VPS52-218ENST00000482399 OR1N2Q8NGR9 330 aa10.05□□□□□ -0.8
VPS52-218ENST00000482399 JKAMPQ9P055 326 aa10.05□□□□□ -0.8
VPS52-218ENST00000482399 TMEM155Q4W5P6 130 aa10.05□□□□□ -0.8
VPS52-218ENST00000482399 COL25A1Q9BXS0 654 aaPredicted RBP10.05□□□□□ -0.8
VPS52-218ENST00000482399 BUB1B-PAK6H3BSN5 160 aa10.05□□□□□ -0.8
VPS52-218ENST00000482399 NDUFA3O95167 84 aa10.05□□□□□ -0.8
VPS52-218ENST00000482399 CD3EP07766 207 aa10.05□□□□□ -0.8
VPS52-218ENST00000482399 MYCNOSP40205 109 aa10.05□□□□□ -0.8
VPS52-218ENST00000482399 SMAGPQ0VAQ4 97 aa10.05□□□□□ -0.8
VPS52-218ENST00000482399 LINC01545Q5VT33 79 aa10.05□□□□□ -0.8
VPS52-218ENST00000482399 GFRA4Q9GZZ7 299 aa10.05□□□□□ -0.8
VPS52-218ENST00000482399 GTSF1LQ9H1H1 148 aa10.05□□□□□ -0.8
VPS52-218ENST00000482399 SMAD7O15105 426 aaKnown RBP10.04□□□□□ -0.8
VPS52-218ENST00000482399 SMIM13P0DJ93 91 aa10.04□□□□□ -0.8
VPS52-218ENST00000482399 MFAP4P55083 255 aa10.04□□□□□ -0.8
VPS52-218ENST00000482399 CLUHP3Q96NS8 147 aa10.04□□□□□ -0.8
VPS52-218ENST00000482399 CSMD1Q96PZ7 3565 aa10.04□□□□□ -0.8
VPS52-218ENST00000482399 RNF182Q8N6D2 247 aa10.04□□□□□ -0.8
VPS52-218ENST00000482399 VGLL1Q99990 258 aa10.04□□□□□ -0.8
VPS52-218ENST00000482399 SHANK2-AS3Q9BTD1 123 aa10.04□□□□□ -0.8
VPS52-218ENST00000482399 FCN3O75636 299 aa10.04□□□□□ -0.8
VPS52-218ENST00000482399 SAMD5Q5TGI4 173 aa10.04□□□□□ -0.8
VPS52-218ENST00000482399 SPANXN1Q5VSR9 72 aa10.04□□□□□ -0.8
VPS52-218ENST00000482399 FAM104BQ5XKR9 115 aa10.04□□□□□ -0.8
VPS52-218ENST00000482399 SMIM12Q96EX1 92 aa10.04□□□□□ -0.8
VPS52-218ENST00000482399 ABHD17AQ96GS6 310 aa10.04□□□□□ -0.8
VPS52-218ENST00000482399 C21orf62Q9NYP8 219 aa10.04□□□□□ -0.8
VPS52-218ENST00000482399 LRBAP50851 2863 aa10.04□□□□□ -0.8
VPS52-218ENST00000482399 C19orf67A6NJJ6 358 aa10.03□□□□□ -0.8
VPS52-218ENST00000482399 CRIP1P50238 77 aa10.03□□□□□ -0.8
VPS52-218ENST00000482399 PRR30Q53SZ7 412 aaPredicted RBP10.03□□□□□ -0.8
VPS52-218ENST00000482399 ZC2HC1BQ5TFG8 222 aa10.03□□□□□ -0.8
VPS52-218ENST00000482399 FAM71F2Q6NXP2 309 aa10.03□□□□□ -0.8
VPS52-218ENST00000482399 FAM169BQ8N8A8 192 aa10.03□□□□□ -0.8
VPS52-218ENST00000482399 FAM57AQ8TBR7 257 aa10.03□□□□□ -0.8
VPS52-218ENST00000482399 NCOR1P1Q9H4R4 102 aa10.03□□□□□ -0.8
VPS52-218ENST00000482399 TRAV26-2A0A0B4J265 109 aa10.03□□□□□ -0.8
VPS52-218ENST00000482399 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.03□□□□□ -0.8
VPS52-218ENST00000482399 CLEC3BP05452 202 aa10.03□□□□□ -0.8
VPS52-218ENST00000482399 S100A4P26447 101 aaKnown RBP10.03□□□□□ -0.8
VPS52-218ENST00000482399 HSD52Q0P140 79 aa10.03□□□□□ -0.8
VPS52-218ENST00000482399 ZNF491Q8N8L2 437 aa10.03□□□□□ -0.8
VPS52-218ENST00000482399 HIST1H4GQ99525 98 aa10.03□□□□□ -0.8
VPS52-218ENST00000482399 E7EQL1 145 aa10.02□□□□□ -0.8
VPS52-218ENST00000482399 EGR2P11161 476 aaPredicted RBP10.02□□□□□ -0.8
VPS52-218ENST00000482399 SIGLEC15Q6ZMC9 328 aa10.02□□□□□ -0.8
VPS52-218ENST00000482399 C9orf118A6NHY6 69 aa10.02□□□□□ -0.81
VPS52-218ENST00000482399 C2orf91Q6ZV80 131 aa10.02□□□□□ -0.81
VPS52-218ENST00000482399 JMJD8Q96S16 334 aa10.02□□□□□ -0.81
VPS52-218ENST00000482399 NBR2O15453 112 aa10.02□□□□□ -0.81
VPS52-218ENST00000482399 FSTL3O95633 263 aa10.02□□□□□ -0.81
VPS52-218ENST00000482399 RPL7P18124 248 aaKnown RBP10.02□□□□□ -0.81
VPS52-218ENST00000482399 PLA2G2CQ5R387 149 aa10.02□□□□□ -0.81
VPS52-218ENST00000482399 AMTNQ6UX39 209 aa10.02□□□□□ -0.81
VPS52-218ENST00000482399 CHD8Q9HCK8 2581 aa10.02□□□□□ -0.81
VPS52-218ENST00000482399 CRXO43186 299 aaPredicted RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms