RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 ZNF705FA8MVS1 300 aaPredicted RBP8.75□□□□□ -1.01
VPS13D-204ENST00000469054 HMGB3O15347 200 aaKnown RBP8.75□□□□□ -1.01
VPS13D-204ENST00000469054 DUSP14O95147 198 aaKnown RBP8.75□□□□□ -1.01
VPS13D-204ENST00000469054 IGKV3-20P01619 116 aa8.75□□□□□ -1.01
VPS13D-204ENST00000469054 GIG44P09565 113 aaPredicted RBP8.75□□□□□ -1.01
VPS13D-204ENST00000469054 SEC11BP0C7V7 166 aa8.75□□□□□ -1.01
VPS13D-204ENST00000469054 STAG3L2P0CL84 134 aa8.75□□□□□ -1.01
VPS13D-204ENST00000469054 STAG3L3P0CL85 134 aa8.75□□□□□ -1.01
VPS13D-204ENST00000469054 NUTF2P61970 127 aaKnown RBP8.75□□□□□ -1.01
VPS13D-204ENST00000469054 UBE2L3P68036 154 aaKnown RBP8.75□□□□□ -1.01
VPS13D-204ENST00000469054 DEFB135Q30KP9 77 aa8.75□□□□□ -1.01
VPS13D-204ENST00000469054 ZFP69Q49AA0 526 aa8.75□□□□□ -1.01
VPS13D-204ENST00000469054 BAP18Q8IXM2 172 aa8.75□□□□□ -1.01
VPS13D-204ENST00000469054 OR8A1Q8NGG7 326 aa8.75□□□□□ -1.01
VPS13D-204ENST00000469054 TP53TG1Q9Y2A0 90 aa8.75□□□□□ -1.01
VPS13D-204ENST00000469054 SPRY2O43597 315 aa8.74□□□□□ -1.01
VPS13D-204ENST00000469054 ZNF705DP0CH99 300 aaPredicted RBP8.74□□□□□ -1.01
VPS13D-204ENST00000469054 ZNF705BP0CI00 300 aaPredicted RBP8.74□□□□□ -1.01
VPS13D-204ENST00000469054 PRB4P10163 310 aaPredicted RBP8.74□□□□□ -1.01
VPS13D-204ENST00000469054 TPT1P13693 172 aaKnown RBP8.74□□□□□ -1.01
VPS13D-204ENST00000469054 C4BPBP20851 252 aa8.74□□□□□ -1.01
VPS13D-204ENST00000469054 CNN1P51911 297 aaKnown RBP8.74□□□□□ -1.01
VPS13D-204ENST00000469054 EXOC3-AS1Q8N2X6 119 aa8.74□□□□□ -1.01
VPS13D-204ENST00000469054 STOML3Q8TAV4 291 aa8.74□□□□□ -1.01
VPS13D-204ENST00000469054 RNF183Q96D59 192 aa8.74□□□□□ -1.01
VPS13D-204ENST00000469054 MRPL53Q96EL3 112 aaKnown RBP8.74□□□□□ -1.01
VPS13D-204ENST00000469054 PHYHIPLQ96FC7 376 aa8.74□□□□□ -1.01
VPS13D-204ENST00000469054 AAMDCQ9H7C9 122 aa8.74□□□□□ -1.01
VPS13D-204ENST00000469054 PRELID1Q9Y255 219 aa8.74□□□□□ -1.01
VPS13D-204ENST00000469054 CTXND1A0A1B0GTU2 59 aa8.73□□□□□ -1.01
VPS13D-204ENST00000469054 A8MTW9 85 aa8.73□□□□□ -1.01
VPS13D-204ENST00000469054 PRAC2D3DTV9 90 aa8.73□□□□□ -1.01
VPS13D-204ENST00000469054 M0R3E3 92 aa8.73□□□□□ -1.01
VPS13D-204ENST00000469054 ARL14EPLP0DKL9 152 aa8.73□□□□□ -1.01
VPS13D-204ENST00000469054 RANP62826 216 aaKnown RBP8.73□□□□□ -1.01
VPS13D-204ENST00000469054 HIST1H1AQ02539 215 aaPredicted RBP8.73□□□□□ -1.01
VPS13D-204ENST00000469054 ICAM4Q14773 271 aa8.73□□□□□ -1.01
VPS13D-204ENST00000469054 SSX7Q7RTT5 188 aa8.73□□□□□ -1.01
VPS13D-204ENST00000469054 LYPD1Q8N2G4 141 aa8.73□□□□□ -1.01
VPS13D-204ENST00000469054 C9orf62Q8N4C0 152 aa8.73□□□□□ -1.01
VPS13D-204ENST00000469054 C1QTNF4Q9BXJ3 329 aa8.73□□□□□ -1.01
VPS13D-204ENST00000469054 UMAD1C9J7I0 102 aa8.72□□□□□ -1.01
VPS13D-204ENST00000469054 CXorf1O96002 111 aa8.72□□□□□ -1.01
VPS13D-204ENST00000469054 FXYD7P58549 80 aa8.72□□□□□ -1.01
VPS13D-204ENST00000469054 ZNF726P1Q15940 193 aa8.72□□□□□ -1.01
VPS13D-204ENST00000469054 AMTNQ6UX39 209 aa8.72□□□□□ -1.01
VPS13D-204ENST00000469054 OR10J6PQ8NGY7 276 aa8.72□□□□□ -1.01
VPS13D-204ENST00000469054 Q9H3A6 140 aa8.72□□□□□ -1.01
VPS13D-204ENST00000469054 XCL2Q9UBD3 114 aa8.72□□□□□ -1.01
VPS13D-204ENST00000469054 GCHFRP30047 84 aa8.71□□□□□ -1.02
VPS13D-204ENST00000469054 SLC51BQ86UW2 128 aa8.71□□□□□ -1.02
VPS13D-204ENST00000469054 CSNK1G2-AS1Q8NCQ2 148 aa8.71□□□□□ -1.02
VPS13D-204ENST00000469054 SUN5Q8TC36 379 aa8.71□□□□□ -1.02
VPS13D-204ENST00000469054 TMED6Q8WW62 240 aa8.71□□□□□ -1.02
VPS13D-204ENST00000469054 RARRES2Q99969 163 aa8.71□□□□□ -1.02
VPS13D-204ENST00000469054 SLC35B3Q9H1N7 401 aa8.71□□□□□ -1.02
VPS13D-204ENST00000469054 TMEM167BQ9NRX6 74 aa8.71□□□□□ -1.02
VPS13D-204ENST00000469054 AGRNO00468 2067 aa8.71□□□□□ -1.02
VPS13D-204ENST00000469054 PGPA6NDG6 321 aa8.7□□□□□ -1.02
VPS13D-204ENST00000469054 CSN1S1P47710 185 aa8.7□□□□□ -1.02
VPS13D-204ENST00000469054 FHITP49789 147 aa8.7□□□□□ -1.02
VPS13D-204ENST00000469054 EIF5AL1Q6IS14 154 aaKnown RBP8.7□□□□□ -1.02
VPS13D-204ENST00000469054 OR11H2Q8NH07 326 aa8.7□□□□□ -1.02
VPS13D-204ENST00000469054 RXFP4Q8TDU9 374 aa8.7□□□□□ -1.02
VPS13D-204ENST00000469054 OTORQ9NRC9 128 aa8.7□□□□□ -1.02
VPS13D-204ENST00000469054 PPP1R14DQ9NXH3 145 aa8.7□□□□□ -1.02
VPS13D-204ENST00000469054 MAP1LC3B2A6NCE7 125 aa8.69□□□□□ -1.02
VPS13D-204ENST00000469054 NPIPB6E9PJ23 425 aa8.69□□□□□ -1.02
VPS13D-204ENST00000469054 BOLA2-SMG1P6H3BVE0 249 aa8.69□□□□□ -1.02
VPS13D-204ENST00000469054 AMBPP02760 352 aa8.69□□□□□ -1.02
VPS13D-204ENST00000469054 NKX2-5P52952 324 aaPredicted RBP8.69□□□□□ -1.02
VPS13D-204ENST00000469054 SPINK13Q1W4C9 94 aa8.69□□□□□ -1.02
VPS13D-204ENST00000469054 FAM74A1Q5RGS3 127 aa8.69□□□□□ -1.02
VPS13D-204ENST00000469054 DPPA3Q6W0C5 159 aa8.69□□□□□ -1.02
VPS13D-204ENST00000469054 IQCF2Q8IXL9 164 aa8.69□□□□□ -1.02
VPS13D-204ENST00000469054 WWC2-AS2Q96NR7 200 aa8.69□□□□□ -1.02
VPS13D-204ENST00000469054 MAP1LC3BQ9GZQ8 125 aa8.69□□□□□ -1.02
VPS13D-204ENST00000469054 IGKV2-40A0A087WW87 121 aaPredicted RBP8.68□□□□□ -1.02
VPS13D-204ENST00000469054 ZNF705EA8MWA4 302 aaPredicted RBP8.68□□□□□ -1.02
VPS13D-204ENST00000469054 M0R2Z0 102 aa8.68□□□□□ -1.02
VPS13D-204ENST00000469054 CRXO43186 299 aaPredicted RBP8.68□□□□□ -1.02
VPS13D-204ENST00000469054 IGKV2D-40P01614 121 aaPredicted RBP8.68□□□□□ -1.02
VPS13D-204ENST00000469054 CT45A10P0DMU9 189 aa8.68□□□□□ -1.02
VPS13D-204ENST00000469054 RAB5CP51148 216 aa8.68□□□□□ -1.02
VPS13D-204ENST00000469054 FGF8P55075 233 aaPredicted RBP8.68□□□□□ -1.02
VPS13D-204ENST00000469054 ERCC8Q13216 396 aa8.68□□□□□ -1.02
VPS13D-204ENST00000469054 ARL6IP6Q8N6S5 226 aa8.68□□□□□ -1.02
VPS13D-204ENST00000469054 CMTM2Q8TAZ6 248 aa8.68□□□□□ -1.02
VPS13D-204ENST00000469054 FAM213BQ8TBF2 198 aa8.68□□□□□ -1.02
VPS13D-204ENST00000469054 MBD3L1Q8WWY6 194 aa8.68□□□□□ -1.02
VPS13D-204ENST00000469054 IGF2BP2-AS1Q96M15 143 aa8.68□□□□□ -1.02
VPS13D-204ENST00000469054 LINC00477Q96M19 166 aa8.68□□□□□ -1.02
VPS13D-204ENST00000469054 ODF3Q96PU9 254 aa8.68□□□□□ -1.02
VPS13D-204ENST00000469054 AGPAT4-IT1Q9H0P7 198 aa8.68□□□□□ -1.02
VPS13D-204ENST00000469054 TMPRSS5Q9H3S3 457 aa8.68□□□□□ -1.02
VPS13D-204ENST00000469054 EDA2RQ9HAV5 297 aa8.68□□□□□ -1.02
VPS13D-204ENST00000469054 A0A1W2PRE2 83 aa8.67□□□□□ -1.02
VPS13D-204ENST00000469054 DIRC3C9JPN6 131 aa8.67□□□□□ -1.02
VPS13D-204ENST00000469054 TSPOP30536 169 aa8.67□□□□□ -1.02
VPS13D-204ENST00000469054 CDKN1BP46527 198 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 117.5 ms