RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 GGCTO75223 188 aaKnown RBP3.55□□□□□ -1.84
PTPN4-206ENST00000441089 HYPMO75409 117 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 MBP02144 154 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 APOHP02749 345 aaPredicted RBP3.55□□□□□ -1.84
PTPN4-206ENST00000441089 STAG3L2P0CL84 134 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 STAG3L3P0CL85 134 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 ORM2P19652 201 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 CDC34P49427 236 aaPredicted RBP3.55□□□□□ -1.84
PTPN4-206ENST00000441089 SELENOTP62341 195 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 PMS2P11Q13670 270 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 FAM78BQ5VT40 261 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 C10orf113Q5VZT2 155 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 LEMD1Q68G75 181 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 SUMO4Q6EEV6 95 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 LCN15Q6UWW0 184 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 DPPA3Q6W0C5 159 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 Q8WTZ3 238 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 C4orf3Q8WVX3 66 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 RNF125Q96EQ8 232 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 SAT2Q96F10 170 aaPredicted RBP3.55□□□□□ -1.84
PTPN4-206ENST00000441089 C17orf77Q96MU5 243 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 PBDC1Q9BVG4 233 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 C1orf43Q9BWL3 253 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 SCRT1Q9BWW7 348 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 SLC25A2Q9BXI2 301 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 SLC25A39Q9BZJ4 359 aaPredicted RBP3.55□□□□□ -1.84
PTPN4-206ENST00000441089 ACTR3CQ9C0K3 210 aaPredicted RBP3.55□□□□□ -1.84
PTPN4-206ENST00000441089 HRH4Q9H3N8 390 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 TUBA4BQ9H853 241 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 DNAJC4Q9NNZ3 241 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 KCNIP2Q9NS61 270 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 FUT9Q9Y231 359 aa3.55□□□□□ -1.84
PTPN4-206ENST00000441089 IGHV3OR16-13A0A075B7E8 117 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 IGHV3-49A0A0A0MS15 119 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 IGHV3-74A0A0B4J1X5 117 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 TRAV1-1A0A0B4J248 108 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 MAP1LC3B2A6NCE7 125 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 NDUFA4O00483 81 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 COX7A2P2O60397 106 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 SAP30O75446 220 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 HSPB1P04792 205 aaKnown RBP3.54□□□□□ -1.84
PTPN4-206ENST00000441089 FABP1P07148 127 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 ARL14EPLP0DKL9 152 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 C8orf88P0DMB2 117 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 PYYP10082 97 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 RELQ04864 619 aaPredicted RBP3.54□□□□□ -1.84
PTPN4-206ENST00000441089 KLF5Q13887 457 aaPredicted RBP3.54□□□□□ -1.84
PTPN4-206ENST00000441089 FAM209BQ5JX69 171 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 LINC00305Q7Z4B0 112 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 GPHB5Q86YW7 130 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 OR11H1Q8NG94 326 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 OR1L4Q8NGR5 311 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 OR1N2Q8NGR9 330 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 SFT2D1Q8WV19 159 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 TMEM190Q8WZ59 177 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 FAM110AQ9BQ89 295 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 SHANK2-AS3Q9BTD1 123 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 MRPL32Q9BYC8 188 aaKnown RBP3.54□□□□□ -1.84
PTPN4-206ENST00000441089 MAP1LC3BQ9GZQ8 125 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 SCRT2Q9NQ03 307 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 TECRQ9NZ01 308 aaKnown RBP3.54□□□□□ -1.84
PTPN4-206ENST00000441089 HIGD1AQ9Y241 93 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 APOBP04114 4563 aaKnown RBP3.54□□□□□ -1.84
PTPN4-206ENST00000441089 AGRNO00468 2067 aa3.54□□□□□ -1.84
PTPN4-206ENST00000441089 IGHV3-66A0A0C4DH42 116 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 A0A1W2PPV4 95 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 TMEM213A2RRL7 107 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 ZNF98A6NK75 572 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 C9JQL5 133 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 LINC01619G3V211 115 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 H3BQ15 152 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 OVOL1O14753 267 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 BUB3O43684 328 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 SCGB2A1O75556 95 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 SNRPCP09234 159 aaKnown RBP3.53□□□□□ -1.84
PTPN4-206ENST00000441089 OR10J4P0C629 311 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 CRYBB3P26998 211 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 GCHFRP30047 84 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 SYNJ2BPP57105 145 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 RAB14P61106 215 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 RHOBP62745 196 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 RPEL1Q2QD12 228 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 IL34Q6ZMJ4 242 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 COMMD7Q86VX2 200 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 SLC7A5P1Q8MH63 180 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 SUN5Q8TC36 379 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 LRRC20Q8TCA0 184 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 DLX4Q92988 240 aaPredicted RBP3.53□□□□□ -1.84
PTPN4-206ENST00000441089 FXYD5Q96DB9 178 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 PFDN5Q99471 154 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 RNF2Q99496 336 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 RARRES2Q99969 163 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 C20orf24Q9BUV8 137 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 TMEM231Q9H6L2 316 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 MED9Q9NWA0 146 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 RABAC1Q9UI14 185 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 SELENOKQ9Y6D0 94 aa3.53□□□□□ -1.84
PTPN4-206ENST00000441089 IGHV7-4-1A0A0J9YVY3 117 aa3.52□□□□□ -1.85
PTPN4-206ENST00000441089 LOC102723971A0A1B0GUV8 181 aa3.52□□□□□ -1.85
PTPN4-206ENST00000441089 ZNF320A2RRD8 509 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms