RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 CCL17Q92583 94 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 CDIP1Q9H305 208 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 ARFGEF3Q5TH69 2177 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 E7EQL1 145 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 NDUFS7O75251 213 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 ZNF562Q6V9R5 426 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 IL17RELQ6ZVW7 336 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 RNF185Q96GF1 192 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 FANCD2OSQ96PS1 177 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 FBXL15Q9H469 300 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 MAP1LC3AQ9H492 121 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 THYN1Q9P016 225 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 HHLA3Q9XRX5 114 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 ZGRF1Q86YA3 2104 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 A0A0G2JLM5 398 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 A0A1W2PPM0 123 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 IL4P05112 153 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 KLF17Q5JT82 389 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 OR2K2Q8NGT1 345 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 C17orf77Q96MU5 243 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 AP1S3Q96PC3 154 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 DPM3Q9P2X0 92 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 IGLV2-18A0A075B6J9 118 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 NHLH1Q02575 133 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 C5orf64Q2M2E5 130 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 GFRALQ6UXV0 394 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 WFDC8Q8IUA0 241 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 AMN1Q8IY45 258 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 Q8N8P6 123 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 C8orf49Q96NF6 230 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 ASCL2Q99929 193 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 PPIAL4CA0A0B4J2A2 164 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 FABP5P3A8MUU1 101 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 ZNF207O43670 478 aaKnown RBP4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 NPYP01303 97 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 IGHG4P01861 327 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 CSN3P07498 182 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 FAM106CPP0CH98 169 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 PPIAL4GP0DN37 164 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 EGR2P11161 476 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 CACNG7P62955 275 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 LOXL1Q08397 574 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 FAM106AQ4KMX7 169 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 MINOS1Q5TGZ0 78 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 CCDC144NLQ6NUI1 221 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 DEFB123Q8N688 67 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 PHLDA1Q8WV24 401 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 JMJD8Q96S16 334 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 VPS25Q9BRG1 176 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 SLC50A1Q9BRV3 221 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 DYNLRB1Q9NP97 96 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 TP73-AS1Q9UF72 201 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 LENEPQ9Y5L5 61 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 MINOS1-NBL1R4GNA1 71 aa4.47□□□□□ -1.69
CCDC88A-203ENST00000412148 FREM2Q5SZK8 3169 aa4.46□□□□□ -1.69
CCDC88A-203ENST00000412148 MYO15AQ9UKN7 3530 aa4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 IGHV3-72A0A0B4J1Y9 119 aa4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 TMEM213A2RRL7 107 aa4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 GNG7O60262 68 aa4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 CKS2P33552 79 aa4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 Q71RC1 249 aaPredicted RBP4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 BCL6BQ8N143 479 aaPredicted RBP4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 DEFB124Q8NES8 71 aa4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 ARPC1AQ92747 370 aa4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 TRAV12-1A0A0B4J245 112 aa4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 CENPVL3A0A0U1RRI6 287 aa4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 A0A1B0GWB2 263 aa4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 H3BTX0 84 aa4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 TIMM23O14925 209 aa4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 SMIM13P0DJ93 91 aa4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 SLC25A16P16260 332 aa4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 PRTN3P24158 256 aa4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 OR8A1Q8NGG7 326 aa4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 C21orf62Q9NYP8 219 aa4.46□□□□□ -1.7
CCDC88A-203ENST00000412148 ZNF561-AS1K7EIQ3 104 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 M0R3E3 92 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 SNAI2O43623 268 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 CNIH1O95406 144 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 KHDC1LQ5JSQ8 128 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 FOXI2Q6ZQN5 318 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 SMAD5-AS1Q9Y6J3 95 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 CADP27708 2225 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 FAM186AA6NE01 2351 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 PLXNB1O43157 2135 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 SPAARA0A1B0GVQ0 90 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 LINC01549A6NIU2 74 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 IGKCP01834 107 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 CTSGP08311 255 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 MED14OSP0DP75 135 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 FABP2P12104 132 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 FOXE3Q13461 319 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 TWIST1Q15672 202 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 MEGF9Q9H1U4 602 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 PLCE1Q9P212 2302 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 CHTOPQ9Y3Y2 248 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 FRYLO94915 3013 aa4.45□□□□□ -1.7
CCDC88A-203ENST00000412148 E9PLD3 99 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 F8W1H4 67 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 H3BUT2 72 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 DPM2O94777 84 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms