RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 MSRB1Q9NZV6 116 aa10.48□□□□□ -0.73
VPS54-203ENST00000409558 MRPL27Q9P0M9 148 aaKnown RBP10.48□□□□□ -0.73
VPS54-203ENST00000409558 ACANP16112 2415 aa10.48□□□□□ -0.73
VPS54-203ENST00000409558 CRIP1P50238 77 aa10.48□□□□□ -0.73
VPS54-203ENST00000409558 LYZL1Q6UWQ5 148 aa10.48□□□□□ -0.73
VPS54-203ENST00000409558 C8orf31Q8N9H6 132 aa10.48□□□□□ -0.73
VPS54-203ENST00000409558 ZNF414Q96IQ9 312 aa10.48□□□□□ -0.73
VPS54-203ENST00000409558 C18orf15Q96N68 181 aa10.48□□□□□ -0.73
VPS54-203ENST00000409558 MIEN1Q9BRT3 115 aa10.48□□□□□ -0.73
VPS54-203ENST00000409558 C1RLQ9NZP8 487 aa10.48□□□□□ -0.73
VPS54-203ENST00000409558 IGHV7-81A0A0B4J1V7 117 aa10.47□□□□□ -0.73
VPS54-203ENST00000409558 PRAC2D3DTV9 90 aa10.47□□□□□ -0.73
VPS54-203ENST00000409558 GLMPQ8WWB7 406 aa10.47□□□□□ -0.73
VPS54-203ENST00000409558 ZNF562Q6V9R5 426 aa10.47□□□□□ -0.73
VPS54-203ENST00000409558 ANKRD17O75179 2603 aaKnown RBP10.47□□□□□ -0.73
VPS54-203ENST00000409558 A1L4Q6 167 aa10.47□□□□□ -0.73
VPS54-203ENST00000409558 TMEM189A5PLL7 270 aa10.47□□□□□ -0.73
VPS54-203ENST00000409558 PIP4P2Q8N4L2 257 aa10.47□□□□□ -0.73
VPS54-203ENST00000409558 MLST8Q9BVC4 326 aa10.47□□□□□ -0.73
VPS54-203ENST00000409558 THYN1Q9P016 225 aa10.47□□□□□ -0.73
VPS54-203ENST00000409558 A0A1B0GUT8 65 aa10.47□□□□□ -0.73
VPS54-203ENST00000409558 EVI2AP22794 236 aa10.47□□□□□ -0.73
VPS54-203ENST00000409558 C7orf69Q9H7B7 122 aa10.47□□□□□ -0.73
VPS54-203ENST00000409558 IGLV2-11P01706 119 aa10.46□□□□□ -0.73
VPS54-203ENST00000409558 INS-IGF2F8WCM5 200 aa10.46□□□□□ -0.74
VPS54-203ENST00000409558 H3BRN7 92 aa10.46□□□□□ -0.74
VPS54-203ENST00000409558 TEX43Q6ZNM6 134 aa10.46□□□□□ -0.74
VPS54-203ENST00000409558 RABAC1Q9UI14 185 aa10.46□□□□□ -0.74
VPS54-203ENST00000409558 DOPEY1Q5JWR5 2465 aa10.46□□□□□ -0.74
VPS54-203ENST00000409558 OR4C46A6NHA9 309 aa10.46□□□□□ -0.74
VPS54-203ENST00000409558 UCNP55089 124 aa10.46□□□□□ -0.74
VPS54-203ENST00000409558 NUTF2P61970 127 aaKnown RBP10.46□□□□□ -0.74
VPS54-203ENST00000409558 CCDC144NLQ6NUI1 221 aa10.46□□□□□ -0.74
VPS54-203ENST00000409558 OR11H6Q8NGC7 330 aa10.46□□□□□ -0.74
VPS54-203ENST00000409558 NEU4Q8WWR8 484 aaPredicted RBP10.46□□□□□ -0.74
VPS54-203ENST00000409558 CTSGP08311 255 aa10.45□□□□□ -0.74
VPS54-203ENST00000409558 LOXL1Q08397 574 aaPredicted RBP10.45□□□□□ -0.74
VPS54-203ENST00000409558 PSG3Q16557 428 aa10.45□□□□□ -0.74
VPS54-203ENST00000409558 FA2HQ7L5A8 372 aa10.45□□□□□ -0.74
VPS54-203ENST00000409558 KIR2DL5BA0A0G2JN68 375 aa10.45□□□□□ -0.74
VPS54-203ENST00000409558 KIR2DL5BA0A0G2JPC4 375 aa10.45□□□□□ -0.74
VPS54-203ENST00000409558 D6R8Y8 96 aa10.45□□□□□ -0.74
VPS54-203ENST00000409558 LINC00614P0C842 121 aa10.45□□□□□ -0.74
VPS54-203ENST00000409558 BTF3P20290 206 aaKnown RBP10.45□□□□□ -0.74
VPS54-203ENST00000409558 KIR2DL5AQ8N109 375 aa10.45□□□□□ -0.74
VPS54-203ENST00000409558 LY6G5BQ8NDX9 201 aa10.45□□□□□ -0.74
VPS54-203ENST00000409558 URB1-AS1Q96HZ7 61 aa10.45□□□□□ -0.74
VPS54-203ENST00000409558 IGHV1-24A0A0C4DH33 117 aa10.45□□□□□ -0.74
VPS54-203ENST00000409558 SH2D1AO60880 128 aa10.45□□□□□ -0.74
VPS54-203ENST00000409558 FAM231DQ6ZW35 169 aa10.45□□□□□ -0.74
VPS54-203ENST00000409558 PRB1P04280 392 aa10.44□□□□□ -0.74
VPS54-203ENST00000409558 IGLL1P15814 213 aa10.44□□□□□ -0.74
VPS54-203ENST00000409558 IFI27P40305 119 aaPredicted RBP10.44□□□□□ -0.74
VPS54-203ENST00000409558 ZNF80P51504 273 aaPredicted RBP10.44□□□□□ -0.74
VPS54-203ENST00000409558 HIST2H2BDQ6DRA6 164 aa10.44□□□□□ -0.74
VPS54-203ENST00000409558 LURAP1LQ8IV03 231 aa10.44□□□□□ -0.74
VPS54-203ENST00000409558 Q8N976 141 aa10.44□□□□□ -0.74
VPS54-203ENST00000409558 IGLV11-55A0A075B6I3 123 aa10.44□□□□□ -0.74
VPS54-203ENST00000409558 Q8N9W7 124 aa10.44□□□□□ -0.74
VPS54-203ENST00000409558 OR4B1Q8NGF8 309 aa10.44□□□□□ -0.74
VPS54-203ENST00000409558 UFC1Q9Y3C8 167 aa10.44□□□□□ -0.74
VPS54-203ENST00000409558 C2orf88Q9BSF0 95 aa10.44□□□□□ -0.74
VPS54-203ENST00000409558 C19orf71A6NCJ1 209 aa10.44□□□□□ -0.74
VPS54-203ENST00000409558 RPLP1P05386 114 aaKnown RBP10.44□□□□□ -0.74
VPS54-203ENST00000409558 IGLC2P0DOY2 106 aa10.44□□□□□ -0.74
VPS54-203ENST00000409558 PVRIGQ6DKI7 326 aa10.44□□□□□ -0.74
VPS54-203ENST00000409558 KLF12Q9Y4X4 402 aa10.44□□□□□ -0.74
VPS54-203ENST00000409558 NPSP0C0P6 89 aa10.43□□□□□ -0.74
VPS54-203ENST00000409558 C11orf71Q6IPW1 123 aa10.43□□□□□ -0.74
VPS54-203ENST00000409558 TMEM70Q9BUB7 260 aa10.43□□□□□ -0.74
VPS54-203ENST00000409558 LOC102724200A0A096LPH7 203 aaPredicted RBP10.43□□□□□ -0.74
VPS54-203ENST00000409558 F8W735 103 aaPredicted RBP10.43□□□□□ -0.74
VPS54-203ENST00000409558 GAS8-AS1O95177 125 aa10.43□□□□□ -0.74
VPS54-203ENST00000409558 STPG4Q8N801 248 aa10.43□□□□□ -0.74
VPS54-203ENST00000409558 GATA1P15976 413 aaPredicted RBP10.43□□□□□ -0.74
VPS54-203ENST00000409558 EGR2P11161 476 aaPredicted RBP10.42□□□□□ -0.74
VPS54-203ENST00000409558 TMEM95Q3KNT9 176 aa10.42□□□□□ -0.74
VPS54-203ENST00000409558 COX19Q49B96 90 aa10.42□□□□□ -0.74
VPS54-203ENST00000409558 HIF1ANQ9NWT6 349 aa10.42□□□□□ -0.74
VPS54-203ENST00000409558 TRBV12-3P01733 135 aa10.42□□□□□ -0.74
VPS54-203ENST00000409558 ATP5J2P56134 94 aa10.42□□□□□ -0.74
VPS54-203ENST00000409558 DUX5Q96PT3 197 aa10.42□□□□□ -0.74
VPS54-203ENST00000409558 NACAE9PAV3 2078 aa10.42□□□□□ -0.74
VPS54-203ENST00000409558 M0R1W7 72 aa10.42□□□□□ -0.74
VPS54-203ENST00000409558 PF4V1P10720 104 aa10.42□□□□□ -0.74
VPS54-203ENST00000409558 RPL7P18124 248 aaKnown RBP10.42□□□□□ -0.74
VPS54-203ENST00000409558 RIGQ13278 110 aa10.42□□□□□ -0.74
VPS54-203ENST00000409558 IL17RELQ6ZVW7 336 aa10.42□□□□□ -0.74
VPS54-203ENST00000409558 OR5AL1P0C617 328 aa10.42□□□□□ -0.74
VPS54-203ENST00000409558 IGLC3P0DOY3 106 aa10.42□□□□□ -0.74
VPS54-203ENST00000409558 AP5S1Q9NUS5 200 aa10.42□□□□□ -0.74
VPS54-203ENST00000409558 IGHV4-61A0A0C4DH41 118 aa10.41□□□□□ -0.74
VPS54-203ENST00000409558 IGKV3-20P01619 116 aa10.41□□□□□ -0.74
VPS54-203ENST00000409558 IGHV4-38-2P0DP08 117 aa10.41□□□□□ -0.74
VPS54-203ENST00000409558 CKS2P33552 79 aa10.41□□□□□ -0.74
VPS54-203ENST00000409558 EFNA4P52798 201 aa10.41□□□□□ -0.74
VPS54-203ENST00000409558 PRSS22Q9GZN4 317 aa10.41□□□□□ -0.74
VPS54-203ENST00000409558 TRGV3P03979 118 aa10.41□□□□□ -0.74
VPS54-203ENST00000409558 FBXL19-AS1Q494R0 122 aa10.41□□□□□ -0.74
VPS54-203ENST00000409558 A0A1B0GXF2 115 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms