RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 TRAV2A0A0B4J234 112 aa10.72□□□□□ -0.69
SKA1-202ENST00000398452 TSPAN4O14817 238 aa10.72□□□□□ -0.69
SKA1-202ENST00000398452 CD300EQ496F6 205 aaPredicted RBP10.72□□□□□ -0.69
SKA1-202ENST00000398452 FAM90A2PQ658T7 463 aa10.72□□□□□ -0.69
SKA1-202ENST00000398452 EXOC3-AS1Q8N2X6 119 aa10.72□□□□□ -0.69
SKA1-202ENST00000398452 EIF4E3Q8N5X7 224 aaKnown RBP10.72□□□□□ -0.69
SKA1-202ENST00000398452 HIST1H2BAQ96A08 127 aa10.72□□□□□ -0.69
SKA1-202ENST00000398452 LINC00052Q96N35 136 aa10.72□□□□□ -0.69
SKA1-202ENST00000398452 SLC35B3Q9H1N7 401 aa10.72□□□□□ -0.69
SKA1-202ENST00000398452 WNK1Q9H4A3 2382 aa10.72□□□□□ -0.69
SKA1-202ENST00000398452 SERTM2A0A1B0GWG4 89 aa10.71□□□□□ -0.69
SKA1-202ENST00000398452 GGTLC3B5MD39 225 aa10.71□□□□□ -0.69
SKA1-202ENST00000398452 TMEM250H0YL14 139 aa10.71□□□□□ -0.69
SKA1-202ENST00000398452 SLC17A3O00476 420 aa10.71□□□□□ -0.69
SKA1-202ENST00000398452 NDUFS6O75380 124 aaKnown RBP10.71□□□□□ -0.69
SKA1-202ENST00000398452 NDUFB4O95168 129 aa10.71□□□□□ -0.69
SKA1-202ENST00000398452 AKR1C3P42330 323 aa10.71□□□□□ -0.69
SKA1-202ENST00000398452 CNN1P51911 297 aaKnown RBP10.71□□□□□ -0.69
SKA1-202ENST00000398452 CMC4P56277 68 aaPredicted RBP10.71□□□□□ -0.69
SKA1-202ENST00000398452 ADAMTSL5Q6ZMM2 481 aa10.71□□□□□ -0.69
SKA1-202ENST00000398452 TMEM61Q8N0U2 210 aa10.71□□□□□ -0.69
SKA1-202ENST00000398452 ZNF738Q8NE65 137 aa10.71□□□□□ -0.69
SKA1-202ENST00000398452 EPDR1Q9UM22 224 aa10.71□□□□□ -0.69
SKA1-202ENST00000398452 PKD1L1Q8TDX9 2849 aa10.7□□□□□ -0.7
SKA1-202ENST00000398452 UBE2G1P62253 170 aa10.7□□□□□ -0.7
SKA1-202ENST00000398452 PSG3Q16557 428 aa10.7□□□□□ -0.7
SKA1-202ENST00000398452 PRR31Q5SQ13 230 aa10.7□□□□□ -0.7
SKA1-202ENST00000398452 SLC7A5P1Q8MH63 180 aa10.7□□□□□ -0.7
SKA1-202ENST00000398452 ARL6IP6Q8N6S5 226 aa10.7□□□□□ -0.7
SKA1-202ENST00000398452 MRPL53Q96EL3 112 aaKnown RBP10.7□□□□□ -0.7
SKA1-202ENST00000398452 ATG101Q9BSB4 218 aa10.7□□□□□ -0.7
SKA1-202ENST00000398452 PEX7O00628 323 aa10.69□□□□□ -0.7
SKA1-202ENST00000398452 IGLV1-51P01701 117 aa10.69□□□□□ -0.7
SKA1-202ENST00000398452 S100A9P06702 114 aaKnown RBP10.69□□□□□ -0.7
SKA1-202ENST00000398452 SRP19P09132 144 aaKnown RBP10.69□□□□□ -0.7
SKA1-202ENST00000398452 CD81P60033 236 aa10.69□□□□□ -0.7
SKA1-202ENST00000398452 OXLD1Q5BKU9 147 aa10.69□□□□□ -0.7
SKA1-202ENST00000398452 SOHLH1Q5JUK2 328 aa10.69□□□□□ -0.7
SKA1-202ENST00000398452 CYB561D1Q8N8Q1 229 aa10.69□□□□□ -0.7
SKA1-202ENST00000398452 SCO2A0A1W2PP80 73 aa10.68□□□□□ -0.7
SKA1-202ENST00000398452 FBLL1A6NHQ2 334 aaKnown RBP10.68□□□□□ -0.7
SKA1-202ENST00000398452 F8W036 122 aa10.68□□□□□ -0.7
SKA1-202ENST00000398452 K7EQG2 157 aa10.68□□□□□ -0.7
SKA1-202ENST00000398452 TCRAP04437 139 aa10.68□□□□□ -0.7
SKA1-202ENST00000398452 SFTA3P0C7M3 94 aa10.68□□□□□ -0.7
SKA1-202ENST00000398452 ZNF688P0C7X2 276 aa10.68□□□□□ -0.7
SKA1-202ENST00000398452 SRSF3P84103 164 aaKnown RBP10.68□□□□□ -0.7
SKA1-202ENST00000398452 DEFA6Q01524 100 aa10.68□□□□□ -0.7
SKA1-202ENST00000398452 ZNF674Q2M3X9 581 aa10.68□□□□□ -0.7
SKA1-202ENST00000398452 PSMG4Q5JS54 123 aa10.68□□□□□ -0.7
SKA1-202ENST00000398452 IGFL4Q6B9Z1 124 aa10.68□□□□□ -0.7
SKA1-202ENST00000398452 CCDC28AQ8IWP9 274 aa10.68□□□□□ -0.7
SKA1-202ENST00000398452 RNF182Q8N6D2 247 aa10.68□□□□□ -0.7
SKA1-202ENST00000398452 WFDC9Q8NEX5 89 aa10.68□□□□□ -0.7
SKA1-202ENST00000398452 OR10J6PQ8NGY7 276 aa10.68□□□□□ -0.7
SKA1-202ENST00000398452 DCANP1Q8TF63 244 aa10.68□□□□□ -0.7
SKA1-202ENST00000398452 ZMAT5Q9UDW3 170 aaKnown RBP10.68□□□□□ -0.7
SKA1-202ENST00000398452 KRBOX1C9JBD0 128 aa10.67□□□□□ -0.7
SKA1-202ENST00000398452 DIRC3C9JPN6 131 aa10.67□□□□□ -0.7
SKA1-202ENST00000398452 M0R3E3 92 aa10.67□□□□□ -0.7
SKA1-202ENST00000398452 GNG5P63218 68 aa10.67□□□□□ -0.7
SKA1-202ENST00000398452 FAM74A3Q4VXF1 159 aa10.67□□□□□ -0.7
SKA1-202ENST00000398452 EBLN2Q6P2I7 272 aa10.67□□□□□ -0.7
SKA1-202ENST00000398452 GOLT1AQ6ZVE7 132 aa10.67□□□□□ -0.7
SKA1-202ENST00000398452 TRRAPQ9Y4A5 3859 aa10.66□□□□□ -0.7
SKA1-202ENST00000398452 TRAV8-2A0A0B4J237 113 aa10.66□□□□□ -0.7
SKA1-202ENST00000398452 TMEM218A2RU14 115 aa10.66□□□□□ -0.7
SKA1-202ENST00000398452 ZNF727A8MUV8 499 aa10.66□□□□□ -0.7
SKA1-202ENST00000398452 SOCS3O14543 225 aa10.66□□□□□ -0.7
SKA1-202ENST00000398452 HLA-DMBP28068 263 aa10.66□□□□□ -0.7
SKA1-202ENST00000398452 TMEM78Q5T7P6 136 aa10.66□□□□□ -0.7
SKA1-202ENST00000398452 GTSCR1Q86UQ5 136 aa10.66□□□□□ -0.7
SKA1-202ENST00000398452 C11orf52Q96A22 123 aa10.66□□□□□ -0.7
SKA1-202ENST00000398452 FMC1Q96HJ9 113 aa10.66□□□□□ -0.7
SKA1-202ENST00000398452 SMIM7Q9BQ49 75 aa10.66□□□□□ -0.7
SKA1-202ENST00000398452 NDFIP1Q9BT67 221 aa10.66□□□□□ -0.7
SKA1-202ENST00000398452 PPP1R14DQ9NXH3 145 aa10.66□□□□□ -0.7
SKA1-202ENST00000398452 IGLL1P15814 213 aa10.65□□□□□ -0.7
SKA1-202ENST00000398452 TAS2R60P59551 318 aa10.65□□□□□ -0.7
SKA1-202ENST00000398452 NIPSNAP3BQ9BS92 247 aa10.65□□□□□ -0.7
SKA1-202ENST00000398452 PARLQ9H300 379 aa10.65□□□□□ -0.7
SKA1-202ENST00000398452 MEGF8Q7Z7M0 2845 aa10.64□□□□□ -0.71
SKA1-202ENST00000398452 RBAKDNA6NC62 111 aa10.64□□□□□ -0.71
SKA1-202ENST00000398452 IZUMO1RA6ND01 250 aa10.64□□□□□ -0.71
SKA1-202ENST00000398452 ZNF705FA8MVS1 300 aaPredicted RBP10.64□□□□□ -0.71
SKA1-202ENST00000398452 OR11H12B2RN74 326 aa10.64□□□□□ -0.71
SKA1-202ENST00000398452 DUSP14O95147 198 aaKnown RBP10.64□□□□□ -0.71
SKA1-202ENST00000398452 RPL35P42766 123 aaKnown RBP10.64□□□□□ -0.71
SKA1-202ENST00000398452 GNG4P50150 75 aa10.64□□□□□ -0.71
SKA1-202ENST00000398452 DEFB131AP59861 70 aa10.64□□□□□ -0.71
SKA1-202ENST00000398452 HIST1H1AQ02539 215 aaPredicted RBP10.64□□□□□ -0.71
SKA1-202ENST00000398452 TMEM75Q8N9X5 138 aa10.64□□□□□ -0.71
SKA1-202ENST00000398452 FLI1Q01543 452 aaPredicted RBP10.63□□□□□ -0.71
SKA1-202ENST00000398452 TMEM183BQ1AE95 376 aa10.63□□□□□ -0.71
SKA1-202ENST00000398452 FOXI2Q6ZQN5 318 aa10.63□□□□□ -0.71
SKA1-202ENST00000398452 PRNTQ86SH4 94 aa10.63□□□□□ -0.71
SKA1-202ENST00000398452 C2CD4CQ8TF44 421 aa10.63□□□□□ -0.71
SKA1-202ENST00000398452 SEC11CQ9BY50 192 aa10.63□□□□□ -0.71
SKA1-202ENST00000398452 IGKV2-40A0A087WW87 121 aaPredicted RBP10.62□□□□□ -0.71
SKA1-202ENST00000398452 TRAV34A0A0B4J273 112 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 263.9 ms