RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 CSPG4Q6UVK1 2322 aa8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 TRBV19A0A075B6N1 114 aa8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 TRAV5A0A0B4J249 113 aa8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 Q0VFX4 171 aa8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 A6NNC1 897 aa8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 TRPT1Q86TN4 253 aaKnown RBP8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 OR13C6PQ8NH95 151 aa8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 A0A087X0K7 114 aa8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 A0A0G2JRQ6 117 aa8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 TMEM8BA6NDV4 472 aa8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 FAM201AQ5SY85 155 aa8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 Q6ZWC4 215 aa8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 A0A1W2PPI3 338 aa8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 PSMB11A5LHX3 300 aa8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 MRPL53Q96EL3 112 aaKnown RBP8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 KAAG1Q9UBP8 84 aa8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 LINC01560Q8TB33 94 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 SSC4DQ8WTU2 575 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 TRAV3A0A0B4J244 114 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 TNFRSF6BO95407 300 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 LTAP01374 205 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 LY6G5BQ8NDX9 201 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 C7orf69Q9H7B7 122 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 MALP21145 153 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 PRTN3P24158 256 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 LY6EQ16553 131 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 RNF138Q8WVD3 245 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 INSP01308 110 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 RSPO4Q2I0M5 234 aaPredicted RBP8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 TMEM158Q8WZ71 300 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 TIMM21Q9BVV7 248 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 ZC2HC1BQ5TFG8 222 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 LILRA1O75019 489 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 IGKV2-40A0A087WW87 121 aaPredicted RBP8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 hDV102S1A0JD36 115 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 IGKV2D-40P01614 121 aaPredicted RBP8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 EVI2AP22794 236 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 KLF12Q9Y4X4 402 aa8.32□□□□□ -1.08
CCDC88A-202ENST00000336838 EREGO14944 169 aa8.31□□□□□ -1.08
CCDC88A-202ENST00000336838 TDGF1P13385 188 aa8.31□□□□□ -1.08
CCDC88A-202ENST00000336838 IGLV1-44P01699 117 aa8.31□□□□□ -1.08
CCDC88A-202ENST00000336838 IGKV1-16P04430 117 aa8.31□□□□□ -1.08
CCDC88A-202ENST00000336838 STHQ8IWL8 128 aa8.31□□□□□ -1.08
CCDC88A-202ENST00000336838 K7EM74 188 aa8.31□□□□□ -1.08
CCDC88A-202ENST00000336838 C1orf122Q6ZSJ8 110 aa8.31□□□□□ -1.08
CCDC88A-202ENST00000336838 TRGV2A0A075B6R0 118 aa8.31□□□□□ -1.08
CCDC88A-202ENST00000336838 C15orf65H3BRN8 121 aa8.31□□□□□ -1.08
CCDC88A-202ENST00000336838 CDKN1AP38936 164 aa8.31□□□□□ -1.08
CCDC88A-202ENST00000336838 WDR87Q6ZQQ6 2873 aa8.31□□□□□ -1.08
CCDC88A-202ENST00000336838 ZNF672Q499Z4 452 aaPredicted RBP8.31□□□□□ -1.08
CCDC88A-202ENST00000336838 DMRTA2Q96SC8 542 aa8.31□□□□□ -1.08
CCDC88A-202ENST00000336838 PRADC1Q9BSG0 188 aa8.31□□□□□ -1.08
CCDC88A-202ENST00000336838 TRAV2A0A0B4J234 112 aa8.31□□□□□ -1.08
CCDC88A-202ENST00000336838 FAM110DQ8TAY7 271 aaPredicted RBP8.31□□□□□ -1.08
CCDC88A-202ENST00000336838 IGHV4-39P01824 125 aa8.31□□□□□ -1.08
CCDC88A-202ENST00000336838 CD59P13987 128 aa8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 ZNF726P1Q15940 193 aa8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 C2orf82Q6UX34 121 aa8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 SRRM4A7MD48 611 aaKnown RBP8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 INS-IGF2F8WCM5 200 aa8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 H3BUA1 57 aa8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 RIPPLY3P57055 190 aa8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 RPL15P61313 204 aaKnown RBP8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 RPL36AP83881 106 aaKnown RBP8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 PMVKQ15126 192 aa8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 Q6ZS92 163 aa8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 PHLDA1Q8WV24 401 aaPredicted RBP8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 RPL36ALQ969Q0 106 aaKnown RBP8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 LSM4Q9Y4Z0 139 aaKnown RBP8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 PF4P02776 101 aa8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 Q5PR19 223 aa8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 GTSCR1Q86UQ5 136 aa8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 TNRC6BQ9UPQ9 1833 aaKnown RBP8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 H3BRN7 92 aa8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 ADAMTSL5Q6ZMM2 481 aa8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 ATP6V0BQ99437 205 aa8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 CSTL1Q9H114 145 aa8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 PTPRQQ9UMZ3 2332 aa8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 ZNF688P0C7X2 276 aa8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 CDKN1BP46527 198 aa8.3□□□□□ -1.08
CCDC88A-202ENST00000336838 IGHV3-23P01764 117 aa8.29□□□□□ -1.08
CCDC88A-202ENST00000336838 ITLN2Q8WWU7 325 aaPredicted RBP8.29□□□□□ -1.08
CCDC88A-202ENST00000336838 PGPEP1Q9NXJ5 209 aa8.29□□□□□ -1.08
CCDC88A-202ENST00000336838 F8VRH5 84 aa8.29□□□□□ -1.08
CCDC88A-202ENST00000336838 ZNHIT1O43257 154 aa8.29□□□□□ -1.08
CCDC88A-202ENST00000336838 HLA-DMBP28068 263 aa8.29□□□□□ -1.08
CCDC88A-202ENST00000336838 SLAQ13239 276 aa8.29□□□□□ -1.08
CCDC88A-202ENST00000336838 A0A1W2PPM0 123 aa8.29□□□□□ -1.08
CCDC88A-202ENST00000336838 C22orf46C9J442 243 aa8.29□□□□□ -1.08
CCDC88A-202ENST00000336838 IGFBPL1Q8WX77 278 aa8.29□□□□□ -1.08
CCDC88A-202ENST00000336838 HLA-DRB4P13762 266 aa8.29□□□□□ -1.08
CCDC88A-202ENST00000336838 HLA-DRB4X5D2U9 266 aa8.29□□□□□ -1.08
CCDC88A-202ENST00000336838 C5orf63A6NC05 138 aa8.29□□□□□ -1.08
CCDC88A-202ENST00000336838 K7EP13 123 aa8.29□□□□□ -1.08
CCDC88A-202ENST00000336838 UBE2E1P51965 193 aa8.29□□□□□ -1.08
CCDC88A-202ENST00000336838 AMN1Q8IY45 258 aa8.29□□□□□ -1.08
CCDC88A-202ENST00000336838 IGLV3-9A0A075B6K5 115 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 IGHV3OR16-12A0A075B7B8 117 aa8.28□□□□□ -1.08
CCDC88A-202ENST00000336838 IGHV3-35A0A0C4DH35 117 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms