RNA–Protein interactions for RNA: ENST00000329397.5

PTP4A3-201, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTP4A3, Length 2,785 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-201ENST00000329397 SOX21Q9Y651 276 aaPredicted RBP13.67□□□□□ -0.22
PTP4A3-201ENST00000329397 A0A087X0K7 114 aa13.67□□□□□ -0.22
PTP4A3-201ENST00000329397 TMEM213A2RRL7 107 aa13.67□□□□□ -0.22
PTP4A3-201ENST00000329397 NEU4Q8WWR8 484 aaPredicted RBP13.67□□□□□ -0.22
PTP4A3-201ENST00000329397 SCNM1Q9BWG6 230 aa13.67□□□□□ -0.22
PTP4A3-201ENST00000329397 MAP1LC3CQ9BXW4 147 aa13.67□□□□□ -0.22
PTP4A3-201ENST00000329397 CD3EP07766 207 aa13.66□□□□□ -0.22
PTP4A3-201ENST00000329397 TCF15Q12870 199 aa13.66□□□□□ -0.22
PTP4A3-201ENST00000329397 PGPEP1Q9NXJ5 209 aa13.66□□□□□ -0.22
PTP4A3-201ENST00000329397 TMEM14CQ9P0S9 112 aa13.66□□□□□ -0.22
PTP4A3-201ENST00000329397 IGKV2-40A0A087WW87 121 aaPredicted RBP13.66□□□□□ -0.22
PTP4A3-201ENST00000329397 H3BRN7 92 aa13.66□□□□□ -0.22
PTP4A3-201ENST00000329397 K7ERU9 68 aa13.66□□□□□ -0.22
PTP4A3-201ENST00000329397 IGKV2D-40P01614 121 aaPredicted RBP13.66□□□□□ -0.22
PTP4A3-201ENST00000329397 HOXB4P17483 251 aaPredicted RBP13.66□□□□□ -0.22
PTP4A3-201ENST00000329397 TMEM191AQ9H0A3 160 aa13.66□□□□□ -0.22
PTP4A3-201ENST00000329397 IFI27P40305 119 aaPredicted RBP13.65□□□□□ -0.22
PTP4A3-201ENST00000329397 Q8TAT8 98 aa13.65□□□□□ -0.22
PTP4A3-201ENST00000329397 AP5S1Q9NUS5 200 aa13.65□□□□□ -0.22
PTP4A3-201ENST00000329397 SELENOKQ9Y6D0 94 aa13.65□□□□□ -0.22
PTP4A3-201ENST00000329397 VAMP3Q15836 100 aa13.65□□□□□ -0.22
PTP4A3-201ENST00000329397 PSG3Q16557 428 aa13.65□□□□□ -0.22
PTP4A3-201ENST00000329397 C5orf64Q2M2E5 130 aa13.65□□□□□ -0.22
PTP4A3-201ENST00000329397 SLC25A34Q6PIV7 304 aa13.65□□□□□ -0.22
PTP4A3-201ENST00000329397 ZNF414Q96IQ9 312 aa13.65□□□□□ -0.22
PTP4A3-201ENST00000329397 ST20Q9HBF5 79 aa13.65□□□□□ -0.22
PTP4A3-201ENST00000329397 OR5AL1P0C617 328 aa13.64□□□□□ -0.23
PTP4A3-201ENST00000329397 ZNF672Q499Z4 452 aaPredicted RBP13.64□□□□□ -0.23
PTP4A3-201ENST00000329397 PRSS3P2Q8NHM4 247 aa13.64□□□□□ -0.23
PTP4A3-201ENST00000329397 AMN1Q8IY45 258 aa13.64□□□□□ -0.23
PTP4A3-201ENST00000329397 OR8A1Q8NGG7 326 aa13.64□□□□□ -0.23
PTP4A3-201ENST00000329397 ATP6V0BQ99437 205 aa13.64□□□□□ -0.23
PTP4A3-201ENST00000329397 COL12A1Q99715 3063 aa13.64□□□□□ -0.23
PTP4A3-201ENST00000329397 OR2T8A6NH00 312 aa13.63□□□□□ -0.23
PTP4A3-201ENST00000329397 LY6LH3BQJ8 138 aa13.63□□□□□ -0.23
PTP4A3-201ENST00000329397 HLA-DMBP28068 263 aa13.63□□□□□ -0.23
PTP4A3-201ENST00000329397 RAB9AP51151 201 aa13.63□□□□□ -0.23
PTP4A3-201ENST00000329397 HERV-K104P63124 156 aa13.63□□□□□ -0.23
PTP4A3-201ENST00000329397 NDPQ00604 133 aa13.63□□□□□ -0.23
PTP4A3-201ENST00000329397 FAM162BQ5T6X4 162 aa13.63□□□□□ -0.23
PTP4A3-201ENST00000329397 FAM231BA6NCW3 169 aa13.63□□□□□ -0.23
PTP4A3-201ENST00000329397 D6R8Y8 96 aa13.63□□□□□ -0.23
PTP4A3-201ENST00000329397 SMKR1H3BMG3 65 aa13.63□□□□□ -0.23
PTP4A3-201ENST00000329397 MRPS12O15235 138 aaKnown RBP13.63□□□□□ -0.23
PTP4A3-201ENST00000329397 LYZL1Q6UWQ5 148 aa13.63□□□□□ -0.23
PTP4A3-201ENST00000329397 TMEM75Q8N9X5 138 aa13.63□□□□□ -0.23
PTP4A3-201ENST00000329397 CITED1Q99966 193 aa13.63□□□□□ -0.23
PTP4A3-201ENST00000329397 SPTAN1Q13813 2472 aaKnown RBP13.62□□□□□ -0.23
PTP4A3-201ENST00000329397 NBR2O15453 112 aa13.62□□□□□ -0.23
PTP4A3-201ENST00000329397 RIGQ13278 110 aa13.62□□□□□ -0.23
PTP4A3-201ENST00000329397 BVES-AS1Q5T3Y7 98 aa13.62□□□□□ -0.23
PTP4A3-201ENST00000329397 SCRT2Q9NQ03 307 aa13.62□□□□□ -0.23
PTP4A3-201ENST00000329397 MAP1AP78559 2803 aaPredicted RBP13.62□□□□□ -0.23
PTP4A3-201ENST00000329397 CDSNQ15517 529 aa13.62□□□□□ -0.23
PTP4A3-201ENST00000329397 FA2HQ7L5A8 372 aa13.62□□□□□ -0.23
PTP4A3-201ENST00000329397 WFDC3Q8IUB2 231 aa13.62□□□□□ -0.23
PTP4A3-201ENST00000329397 C1RLQ9NZP8 487 aa13.62□□□□□ -0.23
PTP4A3-201ENST00000329397 NCBP2LA6PVI3 153 aaKnown RBP13.61□□□□□ -0.23
PTP4A3-201ENST00000329397 TAX1BP3O14907 124 aa13.61□□□□□ -0.23
PTP4A3-201ENST00000329397 ZNF747Q9BV97 191 aa13.61□□□□□ -0.23
PTP4A3-201ENST00000329397 A0A096LNJ9 63 aa13.6□□□□□ -0.23
PTP4A3-201ENST00000329397 K7EQM0 130 aa13.6□□□□□ -0.23
PTP4A3-201ENST00000329397 PAX2Q02962 417 aa13.6□□□□□ -0.23
PTP4A3-201ENST00000329397 FANCD2OSQ96PS1 177 aa13.6□□□□□ -0.23
PTP4A3-201ENST00000329397 HSPB8Q9UJY1 196 aa13.6□□□□□ -0.23
PTP4A3-201ENST00000329397 VPS13CQ709C8 3753 aa13.6□□□□□ -0.23
PTP4A3-201ENST00000329397 TRAV30A0A087WSZ9 112 aa13.6□□□□□ -0.23
PTP4A3-201ENST00000329397 CT45A10P0DMU9 189 aa13.6□□□□□ -0.23
PTP4A3-201ENST00000329397 SH2D1AO60880 128 aa13.6□□□□□ -0.23
PTP4A3-201ENST00000329397 PET117Q6UWS5 81 aa13.6□□□□□ -0.23
PTP4A3-201ENST00000329397 DYNAPQ8N1N2 210 aa13.6□□□□□ -0.23
PTP4A3-201ENST00000329397 CFHR4Q92496 578 aa13.6□□□□□ -0.23
PTP4A3-201ENST00000329397 A0A1B0GW15 77 aa13.59□□□□□ -0.23
PTP4A3-201ENST00000329397 F8W735 103 aaPredicted RBP13.59□□□□□ -0.23
PTP4A3-201ENST00000329397 SAP30O75446 220 aa13.59□□□□□ -0.23
PTP4A3-201ENST00000329397 DPM3Q9P2X0 92 aa13.59□□□□□ -0.23
PTP4A3-201ENST00000329397 LINC01545Q5VT33 79 aa13.59□□□□□ -0.23
PTP4A3-201ENST00000329397 SIGLEC8Q9NYZ4 499 aa13.59□□□□□ -0.23
PTP4A3-201ENST00000329397 NPIPB5A8MRT5 1133 aa13.58□□□□□ -0.24
PTP4A3-201ENST00000329397 PIP4P2Q8N4L2 257 aa13.58□□□□□ -0.24
PTP4A3-201ENST00000329397 AAMDCQ9H7C9 122 aa13.58□□□□□ -0.24
PTP4A3-201ENST00000329397 ZNF80P51504 273 aaPredicted RBP13.58□□□□□ -0.24
PTP4A3-201ENST00000329397 VGLL1Q99990 258 aa13.58□□□□□ -0.24
PTP4A3-201ENST00000329397 WI2-2373I1.2A0A1W2PRP0 233 aa13.57□□□□□ -0.24
PTP4A3-201ENST00000329397 TMEM189A5PLL7 270 aa13.57□□□□□ -0.24
PTP4A3-201ENST00000329397 GAS8-AS1O95177 125 aa13.57□□□□□ -0.24
PTP4A3-201ENST00000329397 UQCRFS1P47985 274 aa13.57□□□□□ -0.24
PTP4A3-201ENST00000329397 FOXC1Q12948 553 aa13.57□□□□□ -0.24
PTP4A3-201ENST00000329397 OR10AG1Q8NH19 301 aa13.57□□□□□ -0.24
PTP4A3-201ENST00000329397 MSRB1Q9NZV6 116 aa13.57□□□□□ -0.24
PTP4A3-201ENST00000329397 IGHV3OR16-13A0A075B7E8 117 aa13.56□□□□□ -0.24
PTP4A3-201ENST00000329397 IGHV3-74A0A0B4J1X5 117 aa13.56□□□□□ -0.24
PTP4A3-201ENST00000329397 EGR2P11161 476 aaPredicted RBP13.56□□□□□ -0.24
PTP4A3-201ENST00000329397 AMMECR1LQ6DCA0 310 aa13.56□□□□□ -0.24
PTP4A3-201ENST00000329397 PRELID3AQ96N28 172 aa13.56□□□□□ -0.24
PTP4A3-201ENST00000329397 IGHV3-66A0A0C4DH42 116 aa13.56□□□□□ -0.24
PTP4A3-201ENST00000329397 C2orf91Q6ZV80 131 aa13.56□□□□□ -0.24
PTP4A3-201ENST00000329397 BOD1L2Q8IYS8 172 aa13.56□□□□□ -0.24
PTP4A3-201ENST00000329397 PPIFP30405 207 aaKnown RBP13.55□□□□□ -0.24
PTP4A3-201ENST00000329397 CSN1S1P47710 185 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms