RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 GTSCR1Q86UQ5 136 aa11.76□□□□□ -0.53
TCOF1-201ENST00000323668 TRAV21A0A0B4J279 112 aa11.75□□□□□ -0.53
TCOF1-201ENST00000323668 ORMDL2Q53FV1 153 aa11.75□□□□□ -0.53
TCOF1-201ENST00000323668 ZC2HC1AQ96GY0 325 aa11.75□□□□□ -0.53
TCOF1-201ENST00000323668 A0A1B0GWB2 263 aa11.75□□□□□ -0.53
TCOF1-201ENST00000323668 H7C2G1 150 aa11.75□□□□□ -0.53
TCOF1-201ENST00000323668 KIR3DS1Q14943 382 aa11.75□□□□□ -0.53
TCOF1-201ENST00000323668 SMAD7O15105 426 aaKnown RBP11.75□□□□□ -0.53
TCOF1-201ENST00000323668 IGHV3-11P01762 117 aa11.75□□□□□ -0.53
TCOF1-201ENST00000323668 LAGE3Q14657 143 aa11.75□□□□□ -0.53
TCOF1-201ENST00000323668 C8orf49Q96NF6 230 aa11.75□□□□□ -0.53
TCOF1-201ENST00000323668 CTSZQ9UBR2 303 aa11.75□□□□□ -0.53
TCOF1-201ENST00000323668 PRSS46E5RG02 174 aa11.74□□□□□ -0.53
TCOF1-201ENST00000323668 PRSS2P07478 247 aa11.74□□□□□ -0.53
TCOF1-201ENST00000323668 CGB3P0DN86 165 aa11.74□□□□□ -0.53
TCOF1-201ENST00000323668 CGB7P0DN87 165 aa11.74□□□□□ -0.53
TCOF1-201ENST00000323668 RNASE4P34096 147 aaKnown RBP11.74□□□□□ -0.53
TCOF1-201ENST00000323668 ZNF56Q15929 161 aa11.74□□□□□ -0.53
TCOF1-201ENST00000323668 PIMREGQ9BSJ6 248 aa11.74□□□□□ -0.53
TCOF1-201ENST00000323668 H3BRN7 92 aa11.74□□□□□ -0.53
TCOF1-201ENST00000323668 ZC2HC1BQ5TFG8 222 aa11.74□□□□□ -0.53
TCOF1-201ENST00000323668 IGKV3-20P01619 116 aa11.74□□□□□ -0.53
TCOF1-201ENST00000323668 PAX8Q06710 450 aa11.74□□□□□ -0.53
TCOF1-201ENST00000323668 COX8AP10176 69 aa11.73□□□□□ -0.53
TCOF1-201ENST00000323668 TMEM158Q8WZ71 300 aa11.73□□□□□ -0.53
TCOF1-201ENST00000323668 K7EM74 188 aa11.73□□□□□ -0.53
TCOF1-201ENST00000323668 ZNF503Q96F45 646 aa11.73□□□□□ -0.53
TCOF1-201ENST00000323668 C22orf46C9J442 243 aa11.73□□□□□ -0.53
TCOF1-201ENST00000323668 PAX1P15863 534 aa11.73□□□□□ -0.53
TCOF1-201ENST00000323668 PIP4P1Q86T03 277 aa11.73□□□□□ -0.53
TCOF1-201ENST00000323668 NDUFB8O95169 186 aa11.72□□□□□ -0.53
TCOF1-201ENST00000323668 SNRPD3P62318 126 aaKnown RBP11.72□□□□□ -0.53
TCOF1-201ENST00000323668 SEM1Q6ZVN7 128 aa11.72□□□□□ -0.53
TCOF1-201ENST00000323668 PRR25Q96S07 402 aa11.72□□□□□ -0.53
TCOF1-201ENST00000323668 SIGLEC15Q6ZMC9 328 aa11.72□□□□□ -0.53
TCOF1-201ENST00000323668 ZNF491Q8N8L2 437 aa11.72□□□□□ -0.53
TCOF1-201ENST00000323668 GLMPQ8WWB7 406 aa11.72□□□□□ -0.53
TCOF1-201ENST00000323668 ZNF479Q96JC4 524 aa11.72□□□□□ -0.53
TCOF1-201ENST00000323668 APOMO95445 188 aa11.72□□□□□ -0.53
TCOF1-201ENST00000323668 ATP5J2P56134 94 aa11.72□□□□□ -0.53
TCOF1-201ENST00000323668 LINC00527Q9UJ94 153 aa11.72□□□□□ -0.53
TCOF1-201ENST00000323668 INS-IGF2F8WCM5 200 aa11.72□□□□□ -0.53
TCOF1-201ENST00000323668 MRPL51Q4U2R6 128 aaKnown RBP11.72□□□□□ -0.53
TCOF1-201ENST00000323668 PAPPA-AS1Q5QFB9 102 aa11.72□□□□□ -0.53
TCOF1-201ENST00000323668 Q6ZVH6 145 aa11.72□□□□□ -0.53
TCOF1-201ENST00000323668 CST9LQ9H4G1 147 aa11.72□□□□□ -0.53
TCOF1-201ENST00000323668 SIGLEC8Q9NYZ4 499 aa11.72□□□□□ -0.53
TCOF1-201ENST00000323668 E7EUB6 86 aa11.71□□□□□ -0.53
TCOF1-201ENST00000323668 NPIPB6E9PJ23 425 aa11.71□□□□□ -0.53
TCOF1-201ENST00000323668 TNFRSF6BO95407 300 aa11.71□□□□□ -0.53
TCOF1-201ENST00000323668 GP9P14770 177 aa11.71□□□□□ -0.53
TCOF1-201ENST00000323668 RIPPLY3P57055 190 aa11.71□□□□□ -0.53
TCOF1-201ENST00000323668 C17orf77Q96MU5 243 aa11.71□□□□□ -0.53
TCOF1-201ENST00000323668 BVES-AS1Q5T3Y7 98 aa11.71□□□□□ -0.53
TCOF1-201ENST00000323668 CEACAM4O75871 244 aa11.71□□□□□ -0.54
TCOF1-201ENST00000323668 CHTOPQ9Y3Y2 248 aaKnown RBP11.71□□□□□ -0.54
TCOF1-201ENST00000323668 CPAMD8Q8IZJ3 1885 aa11.71□□□□□ -0.54
TCOF1-201ENST00000323668 UTF1Q5T230 341 aa11.71□□□□□ -0.54
TCOF1-201ENST00000323668 COX6CP09669 75 aa11.7□□□□□ -0.54
TCOF1-201ENST00000323668 ERCC8Q13216 396 aa11.7□□□□□ -0.54
TCOF1-201ENST00000323668 LGALS9BQ3B8N2 356 aa11.7□□□□□ -0.54
TCOF1-201ENST00000323668 LGALS9CQ6DKI2 356 aa11.7□□□□□ -0.54
TCOF1-201ENST00000323668 ZNF747Q9BV97 191 aa11.7□□□□□ -0.54
TCOF1-201ENST00000323668 CYSLTR1Q9Y271 337 aa11.7□□□□□ -0.54
TCOF1-201ENST00000323668 OVOL1O14753 267 aa11.7□□□□□ -0.54
TCOF1-201ENST00000323668 OCIAD2Q56VL3 154 aa11.7□□□□□ -0.54
TCOF1-201ENST00000323668 MRPL36Q9P0J6 103 aaKnown RBP11.7□□□□□ -0.54
TCOF1-201ENST00000323668 KLF12Q9Y4X4 402 aa11.7□□□□□ -0.54
TCOF1-201ENST00000323668 DOPEY2Q9Y3R5 2298 aa11.7□□□□□ -0.54
TCOF1-201ENST00000323668 PLXNB1O43157 2135 aa11.69□□□□□ -0.54
TCOF1-201ENST00000323668 TRAV41A0A0B4J266 112 aa11.69□□□□□ -0.54
TCOF1-201ENST00000323668 PRR30Q53SZ7 412 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-201ENST00000323668 ATG2AQ2TAZ0 1938 aa11.69□□□□□ -0.54
TCOF1-201ENST00000323668 CEP192Q8TEP8 1941 aa11.69□□□□□ -0.54
TCOF1-201ENST00000323668 PRSS57Q6UWY2 283 aa11.69□□□□□ -0.54
TCOF1-201ENST00000323668 RITA1Q96K30 269 aa11.69□□□□□ -0.54
TCOF1-201ENST00000323668 SPG11Q96JI7 2443 aa11.69□□□□□ -0.54
TCOF1-201ENST00000323668 IGKV1-17P01599 117 aa11.69□□□□□ -0.54
TCOF1-201ENST00000323668 IGLV2-8P01709 118 aa11.69□□□□□ -0.54
TCOF1-201ENST00000323668 C1orf229Q6ZS94 237 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-201ENST00000323668 C9orf139Q6ZV77 190 aa11.69□□□□□ -0.54
TCOF1-201ENST00000323668 DYNLRB2Q8TF09 96 aa11.69□□□□□ -0.54
TCOF1-201ENST00000323668 NDPQ00604 133 aa11.68□□□□□ -0.54
TCOF1-201ENST00000323668 LINC00173Q6ZV60 143 aa11.68□□□□□ -0.54
TCOF1-201ENST00000323668 ARL6IP6Q8N6S5 226 aa11.68□□□□□ -0.54
TCOF1-201ENST00000323668 ZNF418Q8TF45 676 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-201ENST00000323668 TRBV7-1A0A0A6YYK4 115 aa11.68□□□□□ -0.54
TCOF1-201ENST00000323668 FAM120AOSQ5T036 256 aa11.68□□□□□ -0.54
TCOF1-201ENST00000323668 GTSF1Q8WW33 167 aa11.68□□□□□ -0.54
TCOF1-201ENST00000323668 ZNF256Q9Y2P7 627 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-201ENST00000323668 ZNF815PA8K554 130 aa11.68□□□□□ -0.54
TCOF1-201ENST00000323668 H3BRM9 83 aa11.68□□□□□ -0.54
TCOF1-201ENST00000323668 JMJD8Q96S16 334 aa11.68□□□□□ -0.54
TCOF1-201ENST00000323668 HOXA3O43365 443 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-201ENST00000323668 CD7P09564 240 aa11.67□□□□□ -0.54
TCOF1-201ENST00000323668 PLNP26678 52 aa11.67□□□□□ -0.54
TCOF1-201ENST00000323668 TMEM219Q86XT9 240 aa11.67□□□□□ -0.54
TCOF1-201ENST00000323668 C7orf69Q9H7B7 122 aa11.67□□□□□ -0.54
TCOF1-201ENST00000323668 CCL25O15444 150 aa11.67□□□□□ -0.54
TCOF1-201ENST00000323668 NPFFR1Q9GZQ6 430 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms