RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 KIR2DL5BQ8NHK3 375 aa16.43■□□□□ 0.22
HOXD4-201ENST00000306324 CSTL1Q9H114 145 aa16.43■□□□□ 0.22
HOXD4-201ENST00000306324 PLA2G2EQ9NZK7 142 aa16.43■□□□□ 0.22
HOXD4-201ENST00000306324 HUWE1Q7Z6Z7 4374 aaKnown RBP16.43■□□□□ 0.22
HOXD4-201ENST00000306324 UMAD1C9J7I0 102 aa16.42■□□□□ 0.22
HOXD4-201ENST00000306324 CXorf1O96002 111 aa16.42■□□□□ 0.22
HOXD4-201ENST00000306324 FHITP49789 147 aa16.42■□□□□ 0.22
HOXD4-201ENST00000306324 RANP62826 216 aaKnown RBP16.42■□□□□ 0.22
HOXD4-201ENST00000306324 IQCF2Q8IXL9 164 aa16.42■□□□□ 0.22
HOXD4-201ENST00000306324 ICAM4Q14773 271 aa16.42■□□□□ 0.22
HOXD4-201ENST00000306324 EIF5AL1Q6IS14 154 aaKnown RBP16.42■□□□□ 0.22
HOXD4-201ENST00000306324 M0R3E3 92 aa16.41■□□□□ 0.22
HOXD4-201ENST00000306324 NHLRC4P0CG21 123 aaPredicted RBP16.41■□□□□ 0.22
HOXD4-201ENST00000306324 GCHFRP30047 84 aa16.41■□□□□ 0.22
HOXD4-201ENST00000306324 FAM213BQ8TBF2 198 aa16.41■□□□□ 0.22
HOXD4-201ENST00000306324 TM2D3Q9BRN9 247 aa16.41■□□□□ 0.22
HOXD4-201ENST00000306324 ZMAT4Q9H898 229 aa16.41■□□□□ 0.22
HOXD4-201ENST00000306324 UBE2CO00762 179 aa16.4■□□□□ 0.22
HOXD4-201ENST00000306324 CA1P00915 261 aaPredicted RBP16.4■□□□□ 0.22
HOXD4-201ENST00000306324 CNN1P51911 297 aaKnown RBP16.4■□□□□ 0.22
HOXD4-201ENST00000306324 FGF8P55075 233 aaPredicted RBP16.4■□□□□ 0.22
HOXD4-201ENST00000306324 HIST1H1AQ02539 215 aaPredicted RBP16.4■□□□□ 0.22
HOXD4-201ENST00000306324 OR8A1Q8NGG7 326 aa16.4■□□□□ 0.22
HOXD4-201ENST00000306324 SPATA25Q9BR10 227 aa16.4■□□□□ 0.22
HOXD4-201ENST00000306324 Q9H3A6 140 aa16.4■□□□□ 0.22
HOXD4-201ENST00000306324 PRELID1Q9Y255 219 aa16.4■□□□□ 0.22
HOXD4-201ENST00000306324 BOLA1Q9Y3E2 137 aa16.4■□□□□ 0.22
HOXD4-201ENST00000306324 TENM3Q9P273 2699 aa16.39■□□□□ 0.21
HOXD4-201ENST00000306324 MAP1LC3B2A6NCE7 125 aa16.39■□□□□ 0.21
HOXD4-201ENST00000306324 PRAC2D3DTV9 90 aa16.39■□□□□ 0.21
HOXD4-201ENST00000306324 DUSP14O95147 198 aaKnown RBP16.39■□□□□ 0.21
HOXD4-201ENST00000306324 NUTF2P61970 127 aaKnown RBP16.39■□□□□ 0.21
HOXD4-201ENST00000306324 DEFB135Q30KP9 77 aa16.39■□□□□ 0.21
HOXD4-201ENST00000306324 MORN3Q6PF18 240 aaPredicted RBP16.39■□□□□ 0.21
HOXD4-201ENST00000306324 MRPL53Q96EL3 112 aaKnown RBP16.39■□□□□ 0.21
HOXD4-201ENST00000306324 MAP1LC3BQ9GZQ8 125 aa16.39■□□□□ 0.21
HOXD4-201ENST00000306324 RETNQ9HD89 108 aa16.39■□□□□ 0.21
HOXD4-201ENST00000306324 LYPD1Q8N2G4 141 aa16.38■□□□□ 0.21
HOXD4-201ENST00000306324 TMEM167BQ9NRX6 74 aa16.38■□□□□ 0.21
HOXD4-201ENST00000306324 DPPA3Q6W0C5 159 aa16.37■□□□□ 0.21
HOXD4-201ENST00000306324 OR10J6PQ8NGY7 276 aa16.37■□□□□ 0.21
HOXD4-201ENST00000306324 FXYD7P58549 80 aa16.36■□□□□ 0.21
HOXD4-201ENST00000306324 Q6ZWC4 215 aa16.36■□□□□ 0.21
HOXD4-201ENST00000306324 SLC35B3Q9H1N7 401 aa16.36■□□□□ 0.21
HOXD4-201ENST00000306324 TMPRSS5Q9H3S3 457 aa16.36■□□□□ 0.21
HOXD4-201ENST00000306324 BOLA2-SMG1P6H3BVE0 249 aa16.35■□□□□ 0.21
HOXD4-201ENST00000306324 SUN5Q8TC36 379 aa16.35■□□□□ 0.21
HOXD4-201ENST00000306324 SFT2D1Q8WV19 159 aa16.35■□□□□ 0.21
HOXD4-201ENST00000306324 CLUHP3Q96NS8 147 aa16.35■□□□□ 0.21
HOXD4-201ENST00000306324 OTORQ9NRC9 128 aa16.35■□□□□ 0.21
HOXD4-201ENST00000306324 PGPA6NDG6 321 aa16.35■□□□□ 0.21
HOXD4-201ENST00000306324 GIG44P09565 113 aaPredicted RBP16.35■□□□□ 0.21
HOXD4-201ENST00000306324 CSN1S1P47710 185 aa16.35■□□□□ 0.21
HOXD4-201ENST00000306324 RAB5CP51148 216 aa16.35■□□□□ 0.21
HOXD4-201ENST00000306324 FAM74A1Q5RGS3 127 aa16.35■□□□□ 0.21
HOXD4-201ENST00000306324 PPP1R14DQ9NXH3 145 aa16.35■□□□□ 0.21
HOXD4-201ENST00000306324 XCL2Q9UBD3 114 aa16.35■□□□□ 0.21
HOXD4-201ENST00000306324 A0A1B0GV50 99 aa16.34■□□□□ 0.21
HOXD4-201ENST00000306324 SULT1A2P50226 295 aa16.34■□□□□ 0.21
HOXD4-201ENST00000306324 RCHY1Q96PM5 261 aa16.34■□□□□ 0.21
HOXD4-201ENST00000306324 A8MTW9 85 aa16.33■□□□□ 0.2
HOXD4-201ENST00000306324 SPRY2O43597 315 aa16.33■□□□□ 0.2
HOXD4-201ENST00000306324 H2AFB1P0C5Y9 115 aa16.33■□□□□ 0.2
HOXD4-201ENST00000306324 AMTNQ6UX39 209 aa16.33■□□□□ 0.2
HOXD4-201ENST00000306324 CMTM2Q8TAZ6 248 aa16.33■□□□□ 0.2
HOXD4-201ENST00000306324 MBD3L1Q8WWY6 194 aa16.33■□□□□ 0.2
HOXD4-201ENST00000306324 C1QTNF4Q9BXJ3 329 aa16.33■□□□□ 0.2
HOXD4-201ENST00000306324 U3KQK5 164 aa16.33■□□□□ 0.2
HOXD4-201ENST00000306324 IGKV2-40A0A087WW87 121 aaPredicted RBP16.32■□□□□ 0.2
HOXD4-201ENST00000306324 IGKV2D-40P01614 121 aaPredicted RBP16.32■□□□□ 0.2
HOXD4-201ENST00000306324 UBE2G2P60604 165 aa16.32■□□□□ 0.2
HOXD4-201ENST00000306324 ALKAL2Q6UX46 152 aa16.32■□□□□ 0.2
HOXD4-201ENST00000306324 RXFP4Q8TDU9 374 aa16.32■□□□□ 0.2
HOXD4-201ENST00000306324 RNF183Q96D59 192 aa16.32■□□□□ 0.2
HOXD4-201ENST00000306324 OVOL2Q9BRP0 275 aa16.32■□□□□ 0.2
HOXD4-201ENST00000306324 RPH3ALQ9UNE2 315 aa16.32■□□□□ 0.2
HOXD4-201ENST00000306324 M0R2Z0 102 aa16.31■□□□□ 0.2
HOXD4-201ENST00000306324 ERCC8Q13216 396 aa16.31■□□□□ 0.2
HOXD4-201ENST00000306324 SPINK13Q1W4C9 94 aa16.31■□□□□ 0.2
HOXD4-201ENST00000306324 NPIPB6E9PJ23 425 aa16.3■□□□□ 0.2
HOXD4-201ENST00000306324 SLC25A5P05141 298 aaKnown RBP16.3■□□□□ 0.2
HOXD4-201ENST00000306324 TP53TG1Q9Y2A0 90 aa16.3■□□□□ 0.2
HOXD4-201ENST00000306324 SUMO1P63165 101 aaKnown RBP16.29■□□□□ 0.2
HOXD4-201ENST00000306324 A0A1W2PRE2 83 aa16.29■□□□□ 0.2
HOXD4-201ENST00000306324 GGTLC3B5MD39 225 aa16.29■□□□□ 0.2
HOXD4-201ENST00000306324 DIRC3C9JPN6 131 aa16.29■□□□□ 0.2
HOXD4-201ENST00000306324 VGLL1Q99990 258 aa16.29■□□□□ 0.2
HOXD4-201ENST00000306324 YTHDF2Q9Y5A9 579 aaKnown RBP16.29■□□□□ 0.2
HOXD4-201ENST00000306324 STAB2Q8WWQ8 2551 aa16.28■□□□□ 0.2
HOXD4-201ENST00000306324 CT45A10P0DMU9 189 aa16.28■□□□□ 0.2
HOXD4-201ENST00000306324 GNG5P63218 68 aa16.28■□□□□ 0.2
HOXD4-201ENST00000306324 TMEM78Q5T7P6 136 aa16.28■□□□□ 0.2
HOXD4-201ENST00000306324 CSNK1G2-AS1Q8NCQ2 148 aa16.28■□□□□ 0.2
HOXD4-201ENST00000306324 AGPAT4-IT1Q9H0P7 198 aa16.28■□□□□ 0.2
HOXD4-201ENST00000306324 FAM74A7A6NL05 159 aa16.27■□□□□ 0.19
HOXD4-201ENST00000306324 ZNF705EA8MWA4 302 aaPredicted RBP16.27■□□□□ 0.19
HOXD4-201ENST00000306324 C9orf47Q6ZRZ4 202 aa16.27■□□□□ 0.19
HOXD4-201ENST00000306324 C5orf17Q8NAS9 161 aa16.27■□□□□ 0.19
HOXD4-201ENST00000306324 LINC00477Q96M19 166 aa16.27■□□□□ 0.19
HOXD4-201ENST00000306324 RARRES2Q99969 163 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 229.7 ms