RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 ELOBQ15370 118 aa10.72□□□□□ -0.69
SS18-201ENST00000269137 OR11H1Q8NG94 326 aa10.72□□□□□ -0.69
SS18-201ENST00000269137 DPF1Q92782 380 aa10.72□□□□□ -0.69
SS18-201ENST00000269137 CLEC5AQ9NY25 188 aa10.72□□□□□ -0.69
SS18-201ENST00000269137 TRAV34A0A0B4J273 112 aa10.72□□□□□ -0.69
SS18-201ENST00000269137 SERTM2A0A1B0GWG4 89 aa10.72□□□□□ -0.69
SS18-201ENST00000269137 M0R3E3 92 aa10.72□□□□□ -0.69
SS18-201ENST00000269137 IGLV2-8P01709 118 aa10.72□□□□□ -0.69
SS18-201ENST00000269137 UBE2G1P62253 170 aa10.72□□□□□ -0.69
SS18-201ENST00000269137 DEFB136Q30KP8 78 aa10.72□□□□□ -0.69
SS18-201ENST00000269137 C8orf86Q6ZUL3 223 aa10.72□□□□□ -0.69
SS18-201ENST00000269137 GOLT1AQ6ZVE7 132 aa10.72□□□□□ -0.69
SS18-201ENST00000269137 SMIM12Q96EX1 92 aa10.72□□□□□ -0.69
SS18-201ENST00000269137 AURKAIP1Q9NWT8 199 aaPredicted RBP10.72□□□□□ -0.69
SS18-201ENST00000269137 RPH3ALQ9UNE2 315 aa10.72□□□□□ -0.69
SS18-201ENST00000269137 TSSC4Q9Y5U2 329 aaPredicted RBP10.72□□□□□ -0.69
SS18-201ENST00000269137 NIPBLQ6KC79 2804 aaeCLIP10.71□□□□□ -0.69
SS18-201ENST00000269137 K7EN84 100 aa10.71□□□□□ -0.69
SS18-201ENST00000269137 K7EQM0 130 aa10.71□□□□□ -0.69
SS18-201ENST00000269137 BAGE2Q86Y30 109 aa10.71□□□□□ -0.69
SS18-201ENST00000269137 TMEM75Q8N9X5 138 aa10.71□□□□□ -0.69
SS18-201ENST00000269137 ANAPC16Q96DE5 110 aa10.71□□□□□ -0.69
SS18-201ENST00000269137 MRPL53Q96EL3 112 aaKnown RBP10.71□□□□□ -0.69
SS18-201ENST00000269137 TRAV8-2A0A0B4J237 113 aa10.7□□□□□ -0.7
SS18-201ENST00000269137 HAX1O00165 279 aa10.7□□□□□ -0.7
SS18-201ENST00000269137 GCGP01275 180 aa10.7□□□□□ -0.7
SS18-201ENST00000269137 IGLV2-11P01706 119 aa10.7□□□□□ -0.7
SS18-201ENST00000269137 SLURP1P55000 103 aa10.7□□□□□ -0.7
SS18-201ENST00000269137 CITED2Q99967 270 aaPredicted RBP10.7□□□□□ -0.7
SS18-201ENST00000269137 JMJD1CQ15652 2540 aa10.7□□□□□ -0.7
SS18-201ENST00000269137 A0A1B0GUS0 222 aa10.7□□□□□ -0.7
SS18-201ENST00000269137 C2orf70A6NJV1 201 aa10.7□□□□□ -0.7
SS18-201ENST00000269137 CYSRT1A8MQ03 144 aa10.7□□□□□ -0.7
SS18-201ENST00000269137 LTAP01374 205 aa10.7□□□□□ -0.7
SS18-201ENST00000269137 CXCL1P09341 107 aa10.7□□□□□ -0.7
SS18-201ENST00000269137 FHL3Q13643 280 aa10.7□□□□□ -0.7
SS18-201ENST00000269137 LCN12Q6JVE5 192 aa10.7□□□□□ -0.7
SS18-201ENST00000269137 SFRP2Q96HF1 295 aa10.7□□□□□ -0.7
SS18-201ENST00000269137 NRN1Q9NPD7 142 aa10.7□□□□□ -0.7
SS18-201ENST00000269137 URGCP-MRPS24S4R325 110 aa10.7□□□□□ -0.7
SS18-201ENST00000269137 C5orf52A6NGY3 159 aa10.69□□□□□ -0.7
SS18-201ENST00000269137 FBLL1A6NHQ2 334 aaKnown RBP10.69□□□□□ -0.7
SS18-201ENST00000269137 SOCS3O14543 225 aa10.69□□□□□ -0.7
SS18-201ENST00000269137 PPP1R2P9O14990 202 aa10.69□□□□□ -0.7
SS18-201ENST00000269137 S100A6P06703 90 aa10.69□□□□□ -0.7
SS18-201ENST00000269137 EDN2P20800 178 aa10.69□□□□□ -0.7
SS18-201ENST00000269137 CBLN1P23435 193 aa10.69□□□□□ -0.7
SS18-201ENST00000269137 RPS10P46783 165 aaKnown RBP10.69□□□□□ -0.7
SS18-201ENST00000269137 SNRPEP62304 92 aaKnown RBP10.69□□□□□ -0.7
SS18-201ENST00000269137 LINC00518Q8N0U6 118 aa10.69□□□□□ -0.7
SS18-201ENST00000269137 C11orf44Q8N8P7 122 aa10.69□□□□□ -0.7
SS18-201ENST00000269137 MLST8Q9BVC4 326 aa10.69□□□□□ -0.7
SS18-201ENST00000269137 TGIF2-C20orf24A0A0A6YYL0 155 aa10.68□□□□□ -0.7
SS18-201ENST00000269137 H7BYZ3 331 aa10.68□□□□□ -0.7
SS18-201ENST00000269137 HLA-DMBP28068 263 aa10.68□□□□□ -0.7
SS18-201ENST00000269137 PSG3Q16557 428 aa10.68□□□□□ -0.7
SS18-201ENST00000269137 SAMD13Q5VXD3 122 aa10.68□□□□□ -0.7
SS18-201ENST00000269137 IGFL4Q6B9Z1 124 aa10.68□□□□□ -0.7
SS18-201ENST00000269137 TCF24Q7RTU0 167 aa10.68□□□□□ -0.7
SS18-201ENST00000269137 Q86TA4 180 aa10.68□□□□□ -0.7
SS18-201ENST00000269137 RAX2Q96IS3 184 aa10.68□□□□□ -0.7
SS18-201ENST00000269137 C16orf92Q96LL3 132 aa10.68□□□□□ -0.7
SS18-201ENST00000269137 PEMTQ9UBM1 199 aa10.68□□□□□ -0.7
SS18-201ENST00000269137 TRAV8-1A0A0A6YYK1 113 aa10.68□□□□□ -0.7
SS18-201ENST00000269137 AKR1D1P51857 326 aa10.68□□□□□ -0.7
SS18-201ENST00000269137 SGK494Q96LW2 274 aa10.68□□□□□ -0.7
SS18-201ENST00000269137 ZFP30Q9Y2G7 519 aa10.68□□□□□ -0.7
SS18-201ENST00000269137 RBAKDNA6NC62 111 aa10.67□□□□□ -0.7
SS18-201ENST00000269137 ZNF705FA8MVS1 300 aaPredicted RBP10.67□□□□□ -0.7
SS18-201ENST00000269137 M0QZ24 198 aa10.67□□□□□ -0.7
SS18-201ENST00000269137 CCL24O00175 119 aa10.67□□□□□ -0.7
SS18-201ENST00000269137 RPL11P62913 178 aaKnown RBP10.67□□□□□ -0.7
SS18-201ENST00000269137 SRSF2Q01130 221 aaKnown RBP10.67□□□□□ -0.7
SS18-201ENST00000269137 FOXL1Q12952 345 aa10.67□□□□□ -0.7
SS18-201ENST00000269137 OR5I1Q13606 314 aa10.67□□□□□ -0.7
SS18-201ENST00000269137 HIST2H2BDQ6DRA6 164 aa10.67□□□□□ -0.7
SS18-201ENST00000269137 TMEM183AQ8IXX5 376 aa10.67□□□□□ -0.7
SS18-201ENST00000269137 RNF182Q8N6D2 247 aa10.67□□□□□ -0.7
SS18-201ENST00000269137 OR10G8Q8NGN5 311 aa10.67□□□□□ -0.7
SS18-201ENST00000269137 OR9G4Q8NGQ1 327 aa10.67□□□□□ -0.7
SS18-201ENST00000269137 DLX4Q92988 240 aaPredicted RBP10.67□□□□□ -0.7
SS18-201ENST00000269137 DUX3Q96PT4 197 aa10.67□□□□□ -0.7
SS18-201ENST00000269137 OSTCQ9NRP0 149 aa10.67□□□□□ -0.7
SS18-201ENST00000269137 PSG8Q9UQ74 426 aa10.67□□□□□ -0.7
SS18-201ENST00000269137 UBE2CO00762 179 aa10.66□□□□□ -0.7
SS18-201ENST00000269137 MGST1P10620 155 aaKnown RBP10.66□□□□□ -0.7
SS18-201ENST00000269137 ADAMTSL5Q6ZMM2 481 aa10.66□□□□□ -0.7
SS18-201ENST00000269137 PRNTQ86SH4 94 aa10.66□□□□□ -0.7
SS18-201ENST00000269137 NHLRC2Q8NBF2 726 aa10.66□□□□□ -0.7
SS18-201ENST00000269137 WNK1Q9H4A3 2382 aa10.66□□□□□ -0.7
SS18-201ENST00000269137 A0A1W2PRX2 142 aa10.65□□□□□ -0.7
SS18-201ENST00000269137 ADARB2-AS1A8MUL3 147 aa10.65□□□□□ -0.7
SS18-201ENST00000269137 ERVFC1-1P60608 527 aa10.65□□□□□ -0.7
SS18-201ENST00000269137 FAM231DQ6ZW35 169 aa10.65□□□□□ -0.7
SS18-201ENST00000269137 TEP1Q99973 2627 aaKnown RBP10.65□□□□□ -0.7
SS18-201ENST00000269137 TRBV24-1A0A075B6N3 115 aa10.65□□□□□ -0.71
SS18-201ENST00000269137 IGKV2-40A0A087WW87 121 aaPredicted RBP10.65□□□□□ -0.71
SS18-201ENST00000269137 PRAC2D3DTV9 90 aa10.65□□□□□ -0.71
SS18-201ENST00000269137 IGKV2D-40P01614 121 aaPredicted RBP10.65□□□□□ -0.71
SS18-201ENST00000269137 FAM210BQ96KR6 192 aa10.65□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms