RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 NDPQ00604 133 aa15.45■□□□□ 0.06
UPF1-201ENST00000262803 SAMD5Q5TGI4 173 aa15.45■□□□□ 0.06
UPF1-201ENST00000262803 MEGF9Q9H1U4 602 aa15.45■□□□□ 0.06
UPF1-201ENST00000262803 ANAPC10Q9UM13 185 aa15.45■□□□□ 0.06
UPF1-201ENST00000262803 C1orf159Q96HA4 380 aa15.44■□□□□ 0.06
UPF1-201ENST00000262803 DEFB131AP59861 70 aa15.44■□□□□ 0.06
UPF1-201ENST00000262803 ZNF833PQ6ZTB9 187 aa15.44■□□□□ 0.06
UPF1-201ENST00000262803 ZNF524Q96C55 264 aa15.44■□□□□ 0.06
UPF1-201ENST00000262803 C3orf79P0CE67 100 aa15.44■□□□□ 0.06
UPF1-201ENST00000262803 CFHR2P36980 270 aa15.44■□□□□ 0.06
UPF1-201ENST00000262803 ELANEP08246 267 aa15.43■□□□□ 0.06
UPF1-201ENST00000262803 SLAQ13239 276 aa15.43■□□□□ 0.06
UPF1-201ENST00000262803 DMRTC2Q8IXT2 367 aaPredicted RBP15.43■□□□□ 0.06
UPF1-201ENST00000262803 TRBV25-1A0A075B6N4 114 aa15.43■□□□□ 0.06
UPF1-201ENST00000262803 VWC2LB2RUY7 222 aa15.43■□□□□ 0.06
UPF1-201ENST00000262803 TEX36Q5VZQ5 186 aa15.43■□□□□ 0.06
UPF1-201ENST00000262803 TMEM249Q2WGJ8 235 aa15.43■□□□□ 0.06
UPF1-201ENST00000262803 Q8TAT8 98 aa15.43■□□□□ 0.06
UPF1-201ENST00000262803 MYLKQ15746 1914 aa15.43■□□□□ 0.06
UPF1-201ENST00000262803 CHAC1Q9BUX1 264 aa15.42■□□□□ 0.06
UPF1-201ENST00000262803 C14orf178Q8N769 122 aaPredicted RBP15.42■□□□□ 0.06
UPF1-201ENST00000262803 WDR81Q562E7 1941 aa15.42■□□□□ 0.06
UPF1-201ENST00000262803 ABCA4P78363 2273 aa15.42■□□□□ 0.06
UPF1-201ENST00000262803 UBE2E2Q96LR5 201 aa15.41■□□□□ 0.06
UPF1-201ENST00000262803 Q96MF0 132 aa15.41■□□□□ 0.06
UPF1-201ENST00000262803 SELENOKQ9Y6D0 94 aa15.41■□□□□ 0.06
UPF1-201ENST00000262803 ZNF561-AS1K7EIQ3 104 aa15.41■□□□□ 0.06
UPF1-201ENST00000262803 ATP6V0E1O15342 81 aa15.41■□□□□ 0.06
UPF1-201ENST00000262803 IGHV3-53P01767 116 aa15.41■□□□□ 0.06
UPF1-201ENST00000262803 IGHV3-73A0A0B4J1V6 119 aa15.41■□□□□ 0.06
UPF1-201ENST00000262803 NBL1P41271 181 aa15.41■□□□□ 0.06
UPF1-201ENST00000262803 PLA2G2CQ5R387 149 aa15.41■□□□□ 0.06
UPF1-201ENST00000262803 PRIMA1Q86XR5 153 aa15.41■□□□□ 0.06
UPF1-201ENST00000262803 PCNX1Q96RV3 2341 aa15.4■□□□□ 0.06
UPF1-201ENST00000262803 PFN1P07737 140 aaKnown RBP15.4■□□□□ 0.06
UPF1-201ENST00000262803 LINC00479Q96M42 142 aa15.4■□□□□ 0.06
UPF1-201ENST00000262803 A0A1W2PPI3 338 aa15.4■□□□□ 0.06
UPF1-201ENST00000262803 TMEM14BQ9NUH8 114 aa15.4■□□□□ 0.06
UPF1-201ENST00000262803 SPXQ9BT56 116 aa15.4■□□□□ 0.06
UPF1-201ENST00000262803 TSC2P49815 1807 aa15.39■□□□□ 0.05
UPF1-201ENST00000262803 hDV102S1A0JD36 115 aa15.39■□□□□ 0.05
UPF1-201ENST00000262803 PROK2Q9HC23 129 aa15.39■□□□□ 0.05
UPF1-201ENST00000262803 TMEM14CQ9P0S9 112 aa15.39■□□□□ 0.05
UPF1-201ENST00000262803 PRSS46E5RG02 174 aa15.39■□□□□ 0.05
UPF1-201ENST00000262803 FXYD7P58549 80 aa15.39■□□□□ 0.05
UPF1-201ENST00000262803 CR1LQ2VPA4 569 aa15.39■□□□□ 0.05
UPF1-201ENST00000262803 PAX9P55771 341 aa15.39■□□□□ 0.05
UPF1-201ENST00000262803 TMEM158Q8WZ71 300 aa15.39■□□□□ 0.05
UPF1-201ENST00000262803 NDUFA4L2Q9NRX3 87 aa15.39■□□□□ 0.05
UPF1-201ENST00000262803 C1orf122Q6ZSJ8 110 aa15.39■□□□□ 0.05
UPF1-201ENST00000262803 IGHV3-64A0A075B6Q5 118 aa15.38■□□□□ 0.05
UPF1-201ENST00000262803 I3L3M4 83 aa15.38■□□□□ 0.05
UPF1-201ENST00000262803 SPANXDQ9BXN6 97 aa15.38■□□□□ 0.05
UPF1-201ENST00000262803 DLX4Q92988 240 aaPredicted RBP15.38■□□□□ 0.05
UPF1-201ENST00000262803 ZNRD1Q9P1U0 126 aa15.38■□□□□ 0.05
UPF1-201ENST00000262803 IGHV1OR15-1A0A075B7D0 117 aa15.38■□□□□ 0.05
UPF1-201ENST00000262803 H3BMM0 161 aa15.38■□□□□ 0.05
UPF1-201ENST00000262803 LY6HO94772 140 aa15.38■□□□□ 0.05
UPF1-201ENST00000262803 DEFB130BP0DP73 79 aa15.38■□□□□ 0.05
UPF1-201ENST00000262803 DEFB130AP0DP74 79 aa15.38■□□□□ 0.05
UPF1-201ENST00000262803 GUSBP1Q15486 140 aa15.38■□□□□ 0.05
UPF1-201ENST00000262803 IGFL4Q6B9Z1 124 aa15.38■□□□□ 0.05
UPF1-201ENST00000262803 ZNF664Q8N3J9 261 aa15.38■□□□□ 0.05
UPF1-201ENST00000262803 C8orf31Q8N9H6 132 aa15.37■□□□□ 0.05
UPF1-201ENST00000262803 ARMS2P0C7Q2 107 aa15.37■□□□□ 0.05
UPF1-201ENST00000262803 INS-IGF2F8WCM5 200 aa15.37■□□□□ 0.05
UPF1-201ENST00000262803 GAGE2EQ4V326 116 aa15.37■□□□□ 0.05
UPF1-201ENST00000262803 GAGE2DQ9UEU5 116 aa15.37■□□□□ 0.05
UPF1-201ENST00000262803 SHANK1Q9Y566 2161 aa15.37■□□□□ 0.05
UPF1-201ENST00000262803 A0A0U1RRA0 63 aa15.37■□□□□ 0.05
UPF1-201ENST00000262803 TEX48A0A1B0GUV7 120 aa15.37■□□□□ 0.05
UPF1-201ENST00000262803 SYS1-DBNDD2H3BUS1 97 aa15.37■□□□□ 0.05
UPF1-201ENST00000262803 BCL6BQ8N143 479 aaPredicted RBP15.37■□□□□ 0.05
UPF1-201ENST00000262803 SIGMAR1Q99720 223 aa15.37■□□□□ 0.05
UPF1-201ENST00000262803 ZNF124Q15973 351 aa15.36■□□□□ 0.05
UPF1-201ENST00000262803 SPANXA1Q9NS26 97 aa15.36■□□□□ 0.05
UPF1-201ENST00000262803 F5H768 121 aa15.36■□□□□ 0.05
UPF1-201ENST00000262803 NAA38Q9BRA0 125 aaKnown RBP15.36■□□□□ 0.05
UPF1-201ENST00000262803 KAAG1Q9UBP8 84 aa15.36■□□□□ 0.05
UPF1-201ENST00000262803 TRAV13-1A0A0B4J241 112 aa15.35■□□□□ 0.05
UPF1-201ENST00000262803 IGLV1-44P01699 117 aa15.35■□□□□ 0.05
UPF1-201ENST00000262803 C2orf82Q6UX34 121 aa15.35■□□□□ 0.05
UPF1-201ENST00000262803 RSPO1Q2MKA7 263 aaPredicted RBP15.35■□□□□ 0.05
UPF1-201ENST00000262803 ZMAT4Q9H898 229 aa15.35■□□□□ 0.05
UPF1-201ENST00000262803 RUSC1-AS1Q66K80 236 aa15.35■□□□□ 0.05
UPF1-201ENST00000262803 LY6G6EA0A0G2JKS1 128 aa15.35■□□□□ 0.05
UPF1-201ENST00000262803 U3KQA8 63 aa15.35■□□□□ 0.05
UPF1-201ENST00000262803 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.34■□□□□ 0.054e-7■■■■□ 23
UPF1-201ENST00000262803 DLEU1O43261 78 aa15.34■□□□□ 0.05
UPF1-201ENST00000262803 TNFRSF6BO95407 300 aa15.34■□□□□ 0.05
UPF1-201ENST00000262803 IGKV1-39P01597 117 aa15.34■□□□□ 0.05
UPF1-201ENST00000262803 IGKV1D-39P04432 117 aa15.34■□□□□ 0.05
UPF1-201ENST00000262803 AMN1Q8IY45 258 aa15.34■□□□□ 0.05
UPF1-201ENST00000262803 NLRC5Q86WI3 1866 aa15.34■□□□□ 0.05
UPF1-201ENST00000262803 PLXNA4Q9HCM2 1894 aa15.34■□□□□ 0.05
UPF1-201ENST00000262803 MPV17L2Q567V2 206 aa15.34■□□□□ 0.05
UPF1-201ENST00000262803 Q6ZR03 302 aa15.34■□□□□ 0.05
UPF1-201ENST00000262803 Q8N8P6 123 aa15.34■□□□□ 0.05
UPF1-201ENST00000262803 NKAPP1Q8N9T2 125 aa15.34■□□□□ 0.05
UPF1-201ENST00000262803 ANAPC13Q9BS18 74 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms