RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 OR4K15Q8NH41 348 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 MUC7Q8TAX7 377 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 OR8B2Q96RD0 313 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 IMMP2LQ96T52 175 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 C2orf88Q9BSF0 95 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 PDCD10Q9BUL8 212 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 MRPL32Q9BYC8 188 aaKnown RBP1.17□□□□□ -2.22
CD44-239ENST00000639002 MRPL16Q9NX20 251 aaKnown RBP1.17□□□□□ -2.22
CD44-239ENST00000639002 GNG8Q9UK08 70 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 HS3ST2Q9Y278 367 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 CDK5RAP2Q96SN8 1893 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 SPTAN1Q13813 2472 aaKnown RBP1.17□□□□□ -2.22
CD44-239ENST00000639002 RAPGEF6Q8TEU7 1601 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 PRRC2BQ5JSZ5 2229 aaKnown RBP1.17□□□□□ -2.22
CD44-239ENST00000639002 PKD1L1Q8TDX9 2849 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 PCNX1Q96RV3 2341 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 NALCNQ8IZF0 1738 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 ATG2BQ96BY7 2078 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 NUP98P52948 1817 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 ABCA13Q86UQ4 5058 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 CNOT1A5YKK6 2376 aaKnown RBP1.16□□□□□ -2.22
CD44-239ENST00000639002 DISP2A7MBM2 1401 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 NHSL1Q5SYE7 1610 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 IGKV1D-37A0A075B6S9 117 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 IGHV3-15A0A0B4J1V0 119 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 TRBV7-6A0A0J9YX20 115 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 LOC107984640A0A0U1RRK4 108 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 ODAMA1E959 279 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 C19orf71A6NCJ1 209 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 H3BMG7 143 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 C3orf84H3BNL1 204 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 H7BYZ3 331 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 H7C2G1 150 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 J3QQQ9 107 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 M0R378 163 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 PRB1P04280 392 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 HTR1AP08908 422 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 CXCL1P09341 107 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 METTL15P1P0C7V9 234 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 ZNF705BP0CI00 300 aaPredicted RBP1.16□□□□□ -2.22
CD44-239ENST00000639002 P0DMU3 169 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 FAM231AP0DMU4 169 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 FAM231CP0DMU5 169 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 COX6A1P12074 109 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 KDELR1P24390 212 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 RPL28P46779 137 aaKnown RBP1.16□□□□□ -2.22
CD44-239ENST00000639002 INSL3P51460 131 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 ARPP19P56211 112 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 RPS25P62851 125 aaKnown RBP1.16□□□□□ -2.22
CD44-239ENST00000639002 SLC38A11Q08AI6 406 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 HES1Q14469 280 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 HSD17B12Q53GQ0 312 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 DEFB128Q7Z7B8 93 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 CTAGE3PQ8IX95 158 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 PDZD9Q8IXQ8 264 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 RPP25LQ8N5L8 163 aaKnown RBP1.16□□□□□ -2.22
CD44-239ENST00000639002 OR5A2Q8NGI9 324 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 OR5H6Q8NGV6 325 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 STAG3L4Q8TBR4 150 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 WFDC5Q8TCV5 224 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 BRK1Q8WUW1 75 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 MRPS24Q96EL2 167 aaKnown RBP1.16□□□□□ -2.22
CD44-239ENST00000639002 LINC00467Q9BRT7 94 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 OTORQ9NRC9 128 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 CBLN4Q9NTU7 201 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 OR5AC2Q9NZP5 309 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 ERG28Q9UKR5 140 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 BAIAP2Q9UQB8 552 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 ZNF443Q9Y2A4 671 aaPredicted RBP1.16□□□□□ -2.22
CD44-239ENST00000639002 GREB1Q4ZG55 1949 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 AHNAK2Q8IVF2 5795 aa1.16□□□□□ -2.22
CD44-239ENST00000639002 SCRIBQ14160 1630 aa1.15□□□□□ -2.22
CD44-239ENST00000639002 SLX4Q8IY92 1834 aa1.15□□□□□ -2.22
CD44-239ENST00000639002 FANCMQ8IYD8 2048 aa1.15□□□□□ -2.22
CD44-239ENST00000639002 IGLV10-54A0A075B6I4 117 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 TRAV7A0A075B6U4 112 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 MEIKINA0A087WXM9 373 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 A0A0D9SEW6 157 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 TRBV10-2A0A0K0K1G8 114 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 OR2T8A6NH00 312 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 C11orf86A6NJI1 115 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 C17orf98A8MV24 154 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 A8MWV9 139 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 LINC00587B1AMM8 73 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 RER1O15258 196 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 LYRM1O43325 122 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 GNRH2O43555 120 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 NCR2O95944 276 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 GPX1P07203 203 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 ZNF728P0DKX0 622 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 CCL5P13501 91 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 TPT1P13693 172 aaKnown RBP1.15□□□□□ -2.23
CD44-239ENST00000639002 RPL22P35268 128 aaKnown RBP1.15□□□□□ -2.23
CD44-239ENST00000639002 TMEM258P61165 79 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 MRPS36P82909 103 aaKnown RBP1.15□□□□□ -2.23
CD44-239ENST00000639002 EMX2Q04743 252 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 KLRD1Q13241 179 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 KRTAP25-1Q3LHN0 102 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 FAM229BQ4G0N7 80 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 TMEM244Q5VVB8 128 aa1.15□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 94.6 ms