RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 C1orf162Q8NEQ5 155 aaPredicted RBP8.88□□□□□ -0.99
CLN3-244ENST00000636147 OR9G4Q8NGQ1 327 aa8.88□□□□□ -0.99
CLN3-244ENST00000636147 TMEM167AQ8TBQ9 72 aa8.88□□□□□ -0.99
CLN3-244ENST00000636147 WIPF2Q8TF74 440 aaPredicted RBP8.88□□□□□ -0.99
CLN3-244ENST00000636147 MGPP08493 103 aa8.88□□□□□ -0.99
CLN3-244ENST00000636147 SRSF6Q13247 344 aaKnown RBP8.88□□□□□ -0.99
CLN3-244ENST00000636147 TRIP6Q15654 476 aaKnown RBP8.88□□□□□ -0.99
CLN3-244ENST00000636147 ETDBQ3ZM63 59 aa8.88□□□□□ -0.99
CLN3-244ENST00000636147 TMEM200BQ69YZ2 307 aa8.88□□□□□ -0.99
CLN3-244ENST00000636147 ADAMTSL5Q6ZMM2 481 aa8.88□□□□□ -0.99
CLN3-244ENST00000636147 PPP1R27Q86WC6 154 aa8.88□□□□□ -0.99
CLN3-244ENST00000636147 MDS2Q8NDY4 140 aa8.88□□□□□ -0.99
CLN3-244ENST00000636147 ZNF479Q96JC4 524 aa8.88□□□□□ -0.99
CLN3-244ENST00000636147 GAFA1Q96PS6 74 aa8.88□□□□□ -0.99
CLN3-244ENST00000636147 TTTY13Q9BZ97 58 aa8.88□□□□□ -0.99
CLN3-244ENST00000636147 ZNF71Q9NQZ8 489 aaPredicted RBP8.88□□□□□ -0.99
CLN3-244ENST00000636147 MRPL36Q9P0J6 103 aaKnown RBP8.88□□□□□ -0.99
CLN3-244ENST00000636147 TRANK1O15050 2925 aa8.88□□□□□ -0.99
CLN3-244ENST00000636147 C16orf97H3BN30 126 aa8.87□□□□□ -0.99
CLN3-244ENST00000636147 RHOGP84095 191 aa8.87□□□□□ -0.99
CLN3-244ENST00000636147 LINC00322Q6ZN03 302 aaPredicted RBP8.87□□□□□ -0.99
CLN3-244ENST00000636147 SVIPQ8NHG7 77 aa8.87□□□□□ -0.99
CLN3-244ENST00000636147 DEFB104AQ8WTQ1 72 aa8.87□□□□□ -0.99
CLN3-244ENST00000636147 ZNF747Q9BV97 191 aa8.87□□□□□ -0.99
CLN3-244ENST00000636147 WISP2O76076 250 aa8.87□□□□□ -0.99
CLN3-244ENST00000636147 APOMO95445 188 aa8.87□□□□□ -0.99
CLN3-244ENST00000636147 ZC2HC1BQ5TFG8 222 aa8.87□□□□□ -0.99
CLN3-244ENST00000636147 SPATA12Q7Z6I5 190 aa8.87□□□□□ -0.99
CLN3-244ENST00000636147 OR11H12B2RN74 326 aa8.87□□□□□ -0.99
CLN3-244ENST00000636147 PRSS46E5RG02 174 aa8.87□□□□□ -0.99
CLN3-244ENST00000636147 F5H697 171 aa8.87□□□□□ -0.99
CLN3-244ENST00000636147 LYNX1G3V0Z9 82 aa8.87□□□□□ -0.99
CLN3-244ENST00000636147 LYNX1P0DP58 116 aa8.87□□□□□ -0.99
CLN3-244ENST00000636147 OR11H1Q8NG94 326 aa8.87□□□□□ -0.99
CLN3-244ENST00000636147 OR11H2Q8NH07 326 aa8.87□□□□□ -0.99
CLN3-244ENST00000636147 C17orf77Q96MU5 243 aa8.87□□□□□ -0.99
CLN3-244ENST00000636147 H3BRM9 83 aa8.86□□□□□ -0.99
CLN3-244ENST00000636147 CNTFRP26992 372 aa8.86□□□□□ -0.99
CLN3-244ENST00000636147 PSMB2P49721 201 aa8.86□□□□□ -0.99
CLN3-244ENST00000636147 RNF125Q96EQ8 232 aa8.86□□□□□ -0.99
CLN3-244ENST00000636147 RALYQ9UKM9 306 aaKnown RBP8.86□□□□□ -0.99
CLN3-244ENST00000636147 ECSCRQ19T08 205 aa8.86□□□□□ -0.99
CLN3-244ENST00000636147 SCRT2Q9NQ03 307 aa8.86□□□□□ -0.99
CLN3-244ENST00000636147 MRPL16Q9NX20 251 aaKnown RBP8.86□□□□□ -0.99
CLN3-244ENST00000636147 IGLC1P0CG04 106 aa8.86□□□□□ -0.99
CLN3-244ENST00000636147 EIF4EBP1Q13541 118 aaPredicted RBP8.86□□□□□ -0.99
CLN3-244ENST00000636147 AMTNQ6UX39 209 aa8.86□□□□□ -0.99
CLN3-244ENST00000636147 WFDC12Q8WWY7 111 aa8.86□□□□□ -0.99
CLN3-244ENST00000636147 DDB2Q92466 427 aa8.86□□□□□ -0.99
CLN3-244ENST00000636147 DKK2Q9UBU2 259 aa8.86□□□□□ -0.99
CLN3-244ENST00000636147 TSSC4Q9Y5U2 329 aaPredicted RBP8.86□□□□□ -0.99
CLN3-244ENST00000636147 SLC25A15Q9Y619 301 aa8.86□□□□□ -0.99
CLN3-244ENST00000636147 K7EP34 96 aa8.85□□□□□ -0.99
CLN3-244ENST00000636147 SP9P0CG40 484 aa8.85□□□□□ -0.99
CLN3-244ENST00000636147 FAM120AOSQ5T036 256 aa8.85□□□□□ -0.99
CLN3-244ENST00000636147 Q6AWC8 147 aa8.85□□□□□ -0.99
CLN3-244ENST00000636147 C1orf159Q96HA4 380 aa8.85□□□□□ -0.99
CLN3-244ENST00000636147 SIGLEC8Q9NYZ4 499 aa8.85□□□□□ -0.99
CLN3-244ENST00000636147 ANKHD1Q8IWZ3 2542 aaKnown RBP8.85□□□□□ -0.99
CLN3-244ENST00000636147 LRP4O75096 1905 aa8.85□□□□□ -0.99
CLN3-244ENST00000636147 C2CD3Q4AC94 2353 aa8.85□□□□□ -0.99
CLN3-244ENST00000636147 C8orf49Q96NF6 230 aa8.85□□□□□ -0.99
CLN3-244ENST00000636147 C1RLQ9NZP8 487 aa8.85□□□□□ -0.99
CLN3-244ENST00000636147 TEX48A0A1B0GUV7 120 aa8.85□□□□□ -0.99
CLN3-244ENST00000636147 MFAP4P55083 255 aa8.85□□□□□ -0.99
CLN3-244ENST00000636147 LYPD2Q6UXB3 125 aa8.85□□□□□ -0.99
CLN3-244ENST00000636147 GFRALQ6UXV0 394 aa8.85□□□□□ -0.99
CLN3-244ENST00000636147 TRGV9Q99603 122 aa8.85□□□□□ -0.99
CLN3-244ENST00000636147 A0A1B0GW15 77 aa8.84□□□□□ -0.99
CLN3-244ENST00000636147 A0A1W2PPM0 123 aa8.84□□□□□ -0.99
CLN3-244ENST00000636147 C17orf100A8MU93 164 aa8.84□□□□□ -0.99
CLN3-244ENST00000636147 IGKCP01834 107 aa8.84□□□□□ -0.99
CLN3-244ENST00000636147 NEU4Q8WWR8 484 aaPredicted RBP8.84□□□□□ -0.99
CLN3-244ENST00000636147 DPM2O94777 84 aa8.84□□□□□ -0.99
CLN3-244ENST00000636147 AZU1P20160 251 aa8.84□□□□□ -0.99
CLN3-244ENST00000636147 TMEM30BQ3MIR4 351 aa8.84□□□□□ -0.99
CLN3-244ENST00000636147 VKORC1Q9BQB6 163 aa8.84□□□□□ -0.99
CLN3-244ENST00000636147 CHAC1Q9BUX1 264 aa8.84□□□□□ -0.99
CLN3-244ENST00000636147 SH2D1AO60880 128 aa8.83□□□□□ -1
CLN3-244ENST00000636147 PPBPP02775 128 aa8.83□□□□□ -1
CLN3-244ENST00000636147 FAM106CPP0CH98 169 aa8.83□□□□□ -1
CLN3-244ENST00000636147 FAM106AQ4KMX7 169 aa8.83□□□□□ -1
CLN3-244ENST00000636147 GAGE13Q4V321 117 aa8.83□□□□□ -1
CLN3-244ENST00000636147 PLSCR4Q9NRQ2 329 aa8.83□□□□□ -1
CLN3-244ENST00000636147 ZNF492Q9P255 531 aa8.83□□□□□ -1
CLN3-244ENST00000636147 CYSLTR1Q9Y271 337 aa8.83□□□□□ -1
CLN3-244ENST00000636147 M0R381 172 aa8.83□□□□□ -1
CLN3-244ENST00000636147 CT83Q5H943 113 aa8.83□□□□□ -1
CLN3-244ENST00000636147 GFRA4Q9GZZ7 299 aa8.83□□□□□ -1
CLN3-244ENST00000636147 SMIM17P0DL12 118 aa8.83□□□□□ -1
CLN3-244ENST00000636147 LOXL1Q08397 574 aaPredicted RBP8.83□□□□□ -1
CLN3-244ENST00000636147 TMEM78Q5T7P6 136 aa8.83□□□□□ -1
CLN3-244ENST00000636147 ASCL5Q7RTU5 278 aa8.83□□□□□ -1
CLN3-244ENST00000636147 TIMD4Q96H15 378 aa8.83□□□□□ -1
CLN3-244ENST00000636147 VWC2LB2RUY7 222 aa8.82□□□□□ -1
CLN3-244ENST00000636147 C22orf46C9J442 243 aa8.82□□□□□ -1
CLN3-244ENST00000636147 H3BMG7 143 aa8.82□□□□□ -1
CLN3-244ENST00000636147 HAX1O00165 279 aa8.82□□□□□ -1
CLN3-244ENST00000636147 RPS20P60866 119 aaKnown RBP8.82□□□□□ -1
CLN3-244ENST00000636147 POU2AF1Q16633 256 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 177.5 ms