RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 LMO1P25800 156 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 GAGE1Q13065 139 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 GAGE4Q13068 117 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 GAGE5Q13069 117 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 MPV17L2Q567V2 206 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 C18orf12Q96KH6 178 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 BPESC1Q9GZL8 116 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 GAS1P54826 345 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 CCL18P55774 89 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 NABP1Q96AH0 204 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 PLSCR4Q9NRQ2 329 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 SRP19P09132 144 aaKnown RBP4.55□□□□□ -1.68
SCN1A-209ENST00000635750 HAMPP81172 84 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 RPRMLQ8N4K4 120 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 DEFB104AQ8WTQ1 72 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 H2BFSP57053 126 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 RPL18AQ02543 176 aaKnown RBP4.55□□□□□ -1.68
SCN1A-209ENST00000635750 SPATA31B1PQ5VZV4 182 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 LYZL1Q6UWQ5 148 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 WBP1Q96G27 269 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 PLCE1Q9P212 2302 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 MPTX1A8MV57 137 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 PLPPR1Q8TBJ4 325 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 NEUROG3Q9Y4Z2 214 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 TRAV13-2A0A0B4J235 113 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 DEFB105AQ8NG35 78 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 TMEM141Q96I45 108 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 TSSC4Q9Y5U2 329 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-209ENST00000635750 IGKV1OR2-108A0A075B7D4 117 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 GAGE12BA1L429 117 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 GAGE7O76087 117 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 CD55P08174 381 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 GAGE12FP0CL80 117 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 GAGE12GP0CL81 117 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 GAGE12IP0CL82 117 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 Q0VFX4 171 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 TMEM170AQ8WVE7 144 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 IGFBP3P17936 291 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-209ENST00000635750 IFITM3Q01628 133 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 GAGE6Q13070 117 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 C1orf122Q6ZSJ8 110 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 TNCP24821 2201 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 NBL1P41271 181 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 GZMMP51124 257 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 BCL6BQ8N143 479 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-209ENST00000635750 BUB3O43684 328 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 TIRAPP58753 221 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 IL17DQ8TAD2 202 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 IGHV3-16A0A0C4DH30 117 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 DKK1O94907 266 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 C9orf66Q5T8R8 295 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 SPRED2Q7Z698 418 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 DMRTC2Q8IXT2 367 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-209ENST00000635750 LINC00518Q8N0U6 118 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 STPG4Q8N801 248 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 SIGLEC9Q9Y336 463 aa4.54□□□□□ -1.68
SCN1A-209ENST00000635750 A6NNC1 897 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 IGLV3-19P01714 112 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 FOXF2Q12947 444 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 ZNF362Q5T0B9 420 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-209ENST00000635750 RTBDNQ9BSG5 229 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-209ENST00000635750 DEPPQ9NTK1 212 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 C9JAW5 83 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 FUSP35637 526 aaKnown RBP eCLIP4.53□□□□□ -1.68
SCN1A-209ENST00000635750 SRSF2Q01130 221 aaKnown RBP4.53□□□□□ -1.68
SCN1A-209ENST00000635750 C9orf153Q5TBE3 101 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 LINC01590Q5TEZ4 76 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 C1orf43Q9BWL3 253 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 ETDCA0A1B0GVM5 59 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 PFN1P07737 140 aaKnown RBP4.53□□□□□ -1.68
SCN1A-209ENST00000635750 PAX9P55771 341 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 SPINK13Q1W4C9 94 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 Q9HAA7 133 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 SPTAN1Q13813 2472 aaKnown RBP4.53□□□□□ -1.68
SCN1A-209ENST00000635750 IGHV1-24A0A0C4DH33 117 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 OCC1Q8TAD7 63 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 PDE6HQ13956 83 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 C5orf47Q569G3 176 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 UTF1Q5T230 341 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 ZNF319Q9P2F9 582 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 CACNA1EQ15878 2313 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 COL5A3P25940 1745 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-209ENST00000635750 H0YJW9 148 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 NHLRC3Q5JS37 347 aa4.53□□□□□ -1.68
SCN1A-209ENST00000635750 TNRC6AQ8NDV7 1962 aaKnown RBP4.53□□□□□ -1.68
SCN1A-209ENST00000635750 UBE2E1P51965 193 aa4.53□□□□□ -1.69
SCN1A-209ENST00000635750 SH2D6Q7Z4S9 175 aa4.53□□□□□ -1.69
SCN1A-209ENST00000635750 RBM38Q9H0Z9 239 aaKnown RBP4.53□□□□□ -1.69
SCN1A-209ENST00000635750 WDR81Q562E7 1941 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 SRRM5B3KS81 715 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 OVOL3O00110 214 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 IGKV1-5P01602 117 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 TRACP01848 142 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 CR1LQ2VPA4 569 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 TIMM17AQ99595 171 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 NDUFB8O95169 186 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 C1QTNF9P0C862 333 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 ZNF124Q15973 351 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 TM2D2Q9BX73 214 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 IGHV1-69DA0A0B4J2H0 117 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 128.6 ms