RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 TAS2R60P59551 318 aa5.96□□□□□ -1.46
SHKBP1-220ENST00000599716 MRPS10P82664 201 aaKnown RBP5.96□□□□□ -1.46
SHKBP1-220ENST00000599716 SSBP1Q04837 148 aaKnown RBP5.96□□□□□ -1.46
SHKBP1-220ENST00000599716 CYP2G1PQ6ZSU1 146 aa5.96□□□□□ -1.46
SHKBP1-220ENST00000599716 TMEM144Q7Z5S9 345 aa5.96□□□□□ -1.46
SHKBP1-220ENST00000599716 OR4D5Q8NGN0 318 aa5.96□□□□□ -1.46
SHKBP1-220ENST00000599716 RNASE8Q8TDE3 154 aaKnown RBP5.96□□□□□ -1.46
SHKBP1-220ENST00000599716 C15orf40Q8WUR7 153 aa5.96□□□□□ -1.46
SHKBP1-220ENST00000599716 SHANK2-AS3Q9BTD1 123 aa5.96□□□□□ -1.46
SHKBP1-220ENST00000599716 KRTAP4-8Q9BYQ9 185 aa5.96□□□□□ -1.46
SHKBP1-220ENST00000599716 PPP1R14DQ9NXH3 145 aa5.96□□□□□ -1.46
SHKBP1-220ENST00000599716 SCP2D1Q9UJQ7 156 aa5.96□□□□□ -1.46
SHKBP1-220ENST00000599716 TIMM8BQ9Y5J9 83 aaPredicted RBP5.96□□□□□ -1.46
SHKBP1-220ENST00000599716 LINC00854A0A1B0GVQ3 168 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 SLC17A3O00476 420 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 CTDSPLO15194 276 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 SYNGR2O43760 224 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 ADAP1O75689 374 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 IL5P05113 134 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 LINC00869P0C866 280 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 DNAH10OSP0CZ25 163 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 ANXA3P12429 323 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 M6PRP20645 277 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 POLR2GP62487 172 aaKnown RBP eCLIP5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 PSG3Q16557 428 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 GFI1BQ5VTD9 330 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 SAMD13Q5VXD3 122 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 MORN5Q5VZ52 161 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 PATE2Q6UY27 113 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 LRRC20Q8TCA0 184 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 RPUSD4Q96CM3 377 aaKnown RBP5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 ZNF503Q96F45 646 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 C16orf74Q96GX8 76 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 Q9H3A6 140 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 TMPRSS5Q9H3S3 457 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 PLA2G2DQ9UNK4 145 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 HIGD1AQ9Y241 93 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 DNAH8Q96JB1 4490 aa5.95□□□□□ -1.46
SHKBP1-220ENST00000599716 PMS2P5A8MQ11 134 aa5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 MRPS12O15235 138 aaKnown RBP5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 HYPMO75409 117 aa5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 SMR3BP02814 79 aaPredicted RBP5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 CDKN1BP46527 198 aa5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 XGP55808 180 aa5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 ATP5IP56385 69 aaPredicted RBP5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 RAP2BP61225 183 aa5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 SLC38A11Q08AI6 406 aa5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 PPP1R1AQ13522 171 aa5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 Q6ZRN7 208 aaPredicted RBP5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 Q6ZTI0 123 aa5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 CCDC190Q86UF4 302 aa5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 RXFP4Q8TDU9 374 aa5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 TMEM263Q8WUH6 116 aaKnown RBP5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 VSIG2Q96IQ7 327 aa5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 ARL6Q9H0F7 186 aa5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 MDFICQ9P1T7 246 aa5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 CACFD1Q9UGQ2 172 aa5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 SLC45A2Q9UMX9 530 aa5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 RABL2BQ9UNT1 228 aa5.94□□□□□ -1.46
SHKBP1-220ENST00000599716 LRP1Q07954 4544 aaKnown RBP5.93□□□□□ -1.46
SHKBP1-220ENST00000599716 A0A096LPF7 62 aa5.93□□□□□ -1.46
SHKBP1-220ENST00000599716 TRAV12-3A0A0B4J271 114 aa5.93□□□□□ -1.46
SHKBP1-220ENST00000599716 CFDP00746 253 aaPredicted RBP5.93□□□□□ -1.46
SHKBP1-220ENST00000599716 METTL15P1P0C7V9 234 aa5.93□□□□□ -1.46
SHKBP1-220ENST00000599716 RPL7P18124 248 aaKnown RBP5.93□□□□□ -1.46
SHKBP1-220ENST00000599716 ANXA7P20073 488 aaKnown RBP5.93□□□□□ -1.46
SHKBP1-220ENST00000599716 B2MP61769 119 aa5.93□□□□□ -1.46
SHKBP1-220ENST00000599716 SRPXP78539 464 aa5.93□□□□□ -1.46
SHKBP1-220ENST00000599716 TTC32Q5I0X7 151 aa5.93□□□□□ -1.46
SHKBP1-220ENST00000599716 TMEM256Q8N2U0 113 aa5.93□□□□□ -1.46
SHKBP1-220ENST00000599716 LINC00612Q8N6U2 182 aa5.93□□□□□ -1.46
SHKBP1-220ENST00000599716 ZBTB8BQ8NAP8 495 aaPredicted RBP5.93□□□□□ -1.46
SHKBP1-220ENST00000599716 DYNC2LI1Q8TCX1 351 aa5.93□□□□□ -1.46
SHKBP1-220ENST00000599716 GPR82Q96P67 336 aa5.93□□□□□ -1.46
SHKBP1-220ENST00000599716 SCGB3A2Q96PL1 93 aa5.93□□□□□ -1.46
SHKBP1-220ENST00000599716 MRPS16Q9Y3D3 137 aaKnown RBP5.93□□□□□ -1.46
SHKBP1-220ENST00000599716 STRAPQ9Y3F4 350 aaKnown RBP5.93□□□□□ -1.46
SHKBP1-220ENST00000599716 A0A087X0K7 114 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 FABP12A6NFH5 140 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 H7BYZ3 331 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 SSSCA1O60232 199 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 MED6O75586 246 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 SFT2D2O95562 160 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 IGHV3-53P01767 116 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 RLN2P04090 185 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 TNFSF8P32971 234 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 KRTAP10-1P60331 282 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 ARL16Q0P5N6 197 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 LINC01559Q495D7 138 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 TMEM128Q5BJH2 165 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 Q5VSD8 79 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 LRTM2Q8N967 370 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 TRIM63Q969Q1 353 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 CIB3Q96Q77 187 aaPredicted RBP5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 SOSTQ9BQB4 213 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 UPK3BQ9BT76 320 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 ARV1Q9H2C2 271 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 GSN-AS1Q9NRJ2 163 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 PSENENQ9NZ42 101 aa5.92□□□□□ -1.46
SHKBP1-220ENST00000599716 PKHD1L1Q86WI1 4243 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms