RNA–Protein interactions for RNA: ENST00000588687.5

CCDC43-204, Transcript of coiled-coil domain containing 43, humanhuman

TSL 2

Gene CCDC43, Length 721 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-204ENST00000588687 STRAPQ9Y3F4 350 aaKnown RBP12.76□□□□□ -0.37
CCDC43-204ENST00000588687 V9GYH0 126 aa12.76□□□□□ -0.37
CCDC43-204ENST00000588687 K7EPK0 472 aa12.75□□□□□ -0.37
CCDC43-204ENST00000588687 HYPMO75409 117 aa12.75□□□□□ -0.37
CCDC43-204ENST00000588687 CCNKO75909 580 aa12.75□□□□□ -0.37
CCDC43-204ENST00000588687 IL5P05113 134 aa12.75□□□□□ -0.37
CCDC43-204ENST00000588687 HOXB5P09067 269 aa12.75□□□□□ -0.37
CCDC43-204ENST00000588687 HOXA5P20719 270 aa12.75□□□□□ -0.37
CCDC43-204ENST00000588687 FAUP35544 74 aaKnown RBP12.75□□□□□ -0.37
CCDC43-204ENST00000588687 CDKN1BP46527 198 aa12.75□□□□□ -0.37
CCDC43-204ENST00000588687 TMBIM6P55061 237 aa12.75□□□□□ -0.37
CCDC43-204ENST00000588687 RAP2BP61225 183 aa12.75□□□□□ -0.37
CCDC43-204ENST00000588687 RHOBP62745 196 aa12.75□□□□□ -0.37
CCDC43-204ENST00000588687 ID3Q02535 119 aa12.75□□□□□ -0.37
CCDC43-204ENST00000588687 RPUSD4Q96CM3 377 aaKnown RBP12.75□□□□□ -0.37
CCDC43-204ENST00000588687 ZNF503Q96F45 646 aa12.75□□□□□ -0.37
CCDC43-204ENST00000588687 TRAV26-1A0A087WT03 109 aa12.74□□□□□ -0.37
CCDC43-204ENST00000588687 HTN1P15515 57 aa12.74□□□□□ -0.37
CCDC43-204ENST00000588687 BTF3P20290 206 aaKnown RBP12.74□□□□□ -0.37
CCDC43-204ENST00000588687 POLR2GP62487 172 aaKnown RBP eCLIP12.74□□□□□ -0.37
CCDC43-204ENST00000588687 CLINT1Q14677 625 aa12.74□□□□□ -0.37
CCDC43-204ENST00000588687 RXFP4Q8TDU9 374 aa12.74□□□□□ -0.37
CCDC43-204ENST00000588687 SLC25A21Q9BQT8 299 aaPredicted RBP12.74□□□□□ -0.37
CCDC43-204ENST00000588687 SCRT2Q9NQ03 307 aa12.74□□□□□ -0.37
CCDC43-204ENST00000588687 ZNF331Q9NQX6 463 aaPredicted RBP12.74□□□□□ -0.37
CCDC43-204ENST00000588687 VPS13BQ7Z7G8 4022 aa12.73□□□□□ -0.37
CCDC43-204ENST00000588687 SMCO3A2RU48 225 aa12.73□□□□□ -0.37
CCDC43-204ENST00000588687 H3BMQ9 156 aa12.73□□□□□ -0.37
CCDC43-204ENST00000588687 H7BYZ3 331 aa12.73□□□□□ -0.37
CCDC43-204ENST00000588687 ZNF701M0R085 212 aaPredicted RBP12.73□□□□□ -0.37
CCDC43-204ENST00000588687 ADAP1O75689 374 aa12.73□□□□□ -0.37
CCDC43-204ENST00000588687 OR5G3P0C626 314 aa12.73□□□□□ -0.37
CCDC43-204ENST00000588687 M6PRP20645 277 aa12.73□□□□□ -0.37
CCDC43-204ENST00000588687 SELENOTP62341 195 aa12.73□□□□□ -0.37
CCDC43-204ENST00000588687 TTC32Q5I0X7 151 aa12.73□□□□□ -0.37
CCDC43-204ENST00000588687 PARD6GQ9BYG4 376 aaPredicted RBP12.73□□□□□ -0.37
CCDC43-204ENST00000588687 CXCL2P19875 107 aa12.72□□□□□ -0.37
CCDC43-204ENST00000588687 AP3S2P59780 193 aa12.72□□□□□ -0.37
CCDC43-204ENST00000588687 DLK1P80370 383 aa12.72□□□□□ -0.37
CCDC43-204ENST00000588687 ESRGQ1W209 222 aa12.72□□□□□ -0.37
CCDC43-204ENST00000588687 GFI1BQ5VTD9 330 aa12.72□□□□□ -0.37
CCDC43-204ENST00000588687 TMEM14EPQ6UXP3 125 aa12.72□□□□□ -0.37
CCDC43-204ENST00000588687 TOMM5Q8N4H5 51 aa12.72□□□□□ -0.37
CCDC43-204ENST00000588687 ZBTB8BQ8NAP8 495 aaPredicted RBP12.72□□□□□ -0.37
CCDC43-204ENST00000588687 OR10J6PQ8NGY7 276 aa12.72□□□□□ -0.37
CCDC43-204ENST00000588687 GNPNAT1Q96EK6 184 aaPredicted RBP12.72□□□□□ -0.37
CCDC43-204ENST00000588687 C20orf144Q9BQM9 153 aa12.72□□□□□ -0.37
CCDC43-204ENST00000588687 A0A1W2PPQ1 181 aa12.71□□□□□ -0.37
CCDC43-204ENST00000588687 PRAC2D3DTV9 90 aa12.71□□□□□ -0.37
CCDC43-204ENST00000588687 FNDC10F2Z333 226 aa12.71□□□□□ -0.37
CCDC43-204ENST00000588687 SLC17A3O00476 420 aa12.71□□□□□ -0.37
CCDC43-204ENST00000588687 SLC38A11Q08AI6 406 aa12.71□□□□□ -0.37
CCDC43-204ENST00000588687 DEDD2Q8WXF8 326 aa12.71□□□□□ -0.37
CCDC43-204ENST00000588687 ARL6Q9H0F7 186 aa12.71□□□□□ -0.37
CCDC43-204ENST00000588687 ARV1Q9H2C2 271 aa12.71□□□□□ -0.37
CCDC43-204ENST00000588687 MRPS16Q9Y3D3 137 aaKnown RBP12.71□□□□□ -0.37
CCDC43-204ENST00000588687 DMBT1Q9UGM3 2413 aaPredicted RBP12.7□□□□□ -0.38
CCDC43-204ENST00000588687 A0A0J9YY99 117 aa12.7□□□□□ -0.38
CCDC43-204ENST00000588687 H3BNG1 76 aa12.7□□□□□ -0.38
CCDC43-204ENST00000588687 SSSCA1O60232 199 aa12.7□□□□□ -0.38
CCDC43-204ENST00000588687 RRAS2P62070 204 aaPredicted RBP12.7□□□□□ -0.38
CCDC43-204ENST00000588687 OR5I1Q13606 314 aa12.7□□□□□ -0.38
CCDC43-204ENST00000588687 LCN15Q6UWW0 184 aa12.7□□□□□ -0.38
CCDC43-204ENST00000588687 Q6ZRN7 208 aaPredicted RBP12.7□□□□□ -0.38
CCDC43-204ENST00000588687 MCFD2Q8NI22 146 aa12.7□□□□□ -0.38
CCDC43-204ENST00000588687 PPP1R14DQ9NXH3 145 aa12.7□□□□□ -0.38
CCDC43-204ENST00000588687 PSENENQ9NZ42 101 aa12.7□□□□□ -0.38
CCDC43-204ENST00000588687 C9orf170A2RU37 121 aa12.69□□□□□ -0.38
CCDC43-204ENST00000588687 SNRPCP09234 159 aaKnown RBP12.69□□□□□ -0.38
CCDC43-204ENST00000588687 UBE2MP61081 183 aaKnown RBP12.69□□□□□ -0.38
CCDC43-204ENST00000588687 MORN5Q5VZ52 161 aa12.69□□□□□ -0.38
CCDC43-204ENST00000588687 SMIM8Q96KF7 97 aa12.69□□□□□ -0.38
CCDC43-204ENST00000588687 SLC50A1Q9BRV3 221 aa12.69□□□□□ -0.38
CCDC43-204ENST00000588687 LINC00854A0A1B0GVQ3 168 aa12.68□□□□□ -0.38
CCDC43-204ENST00000588687 METTL15P1P0C7V9 234 aa12.68□□□□□ -0.38
CCDC43-204ENST00000588687 IGLC2P0DOY2 106 aa12.68□□□□□ -0.38
CCDC43-204ENST00000588687 PYDC2Q56P42 97 aa12.68□□□□□ -0.38
CCDC43-204ENST00000588687 TMPRSS5Q9H3S3 457 aa12.68□□□□□ -0.38
CCDC43-204ENST00000588687 GAGE12BA1L429 117 aa12.67□□□□□ -0.38
CCDC43-204ENST00000588687 GAGE7O76087 117 aa12.67□□□□□ -0.38
CCDC43-204ENST00000588687 GAGE12FP0CL80 117 aa12.67□□□□□ -0.38
CCDC43-204ENST00000588687 GAGE12GP0CL81 117 aa12.67□□□□□ -0.38
CCDC43-204ENST00000588687 GAGE12IP0CL82 117 aa12.67□□□□□ -0.38
CCDC43-204ENST00000588687 ARL16Q0P5N6 197 aa12.67□□□□□ -0.38
CCDC43-204ENST00000588687 C4orf46Q504U0 113 aa12.67□□□□□ -0.38
CCDC43-204ENST00000588687 TEPPQ6URK8 271 aa12.67□□□□□ -0.38
CCDC43-204ENST00000588687 LINC00305Q7Z4B0 112 aa12.67□□□□□ -0.38
CCDC43-204ENST00000588687 LRRC20Q8TCA0 184 aa12.67□□□□□ -0.38
CCDC43-204ENST00000588687 TMEM37Q8WXS4 190 aa12.67□□□□□ -0.38
CCDC43-204ENST00000588687 VSIG2Q96IQ7 327 aa12.67□□□□□ -0.38
CCDC43-204ENST00000588687 NPVFQ9HCQ7 196 aa12.67□□□□□ -0.38
CCDC43-204ENST00000588687 ZNF586Q9NXT0 402 aa12.67□□□□□ -0.38
CCDC43-204ENST00000588687 RCL1Q9Y2P8 373 aaKnown RBP12.67□□□□□ -0.38
CCDC43-204ENST00000588687 H3BTX0 84 aa12.66□□□□□ -0.38
CCDC43-204ENST00000588687 LINC00315P59091 139 aa12.66□□□□□ -0.38
CCDC43-204ENST00000588687 PXDC1Q5TGL8 231 aa12.66□□□□□ -0.38
CCDC43-204ENST00000588687 ZNF546Q86UE3 836 aa12.66□□□□□ -0.38
CCDC43-204ENST00000588687 SAT2Q96F10 170 aaPredicted RBP12.66□□□□□ -0.38
CCDC43-204ENST00000588687 ODF3Q96PU9 254 aa12.66□□□□□ -0.38
CCDC43-204ENST00000588687 A0A096LPF7 62 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms